Wall clock time and date at job start Wed Apr 1 2020 03:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31879 * 118.95738 * 2 1 4 4 C 1.32131 * 120.96981 * 179.97438 * 3 2 1 5 5 C 1.39969 * 118.92272 * 0.02562 * 4 3 2 6 6 C 1.47838 * 120.93681 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99504 * 174.15153 * 6 5 4 8 8 N 1.34771 * 120.00271 * 354.15072 * 6 5 4 9 9 C 1.46498 * 120.00239 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.01431 * 325.70501 * 9 8 6 11 11 C 1.54269 * 110.02999 * 87.09114 * 9 8 6 12 12 C 1.54896 * 104.19290 * 142.89551 * 11 9 8 13 13 C 1.54884 * 102.74857 * 322.06074 * 12 11 9 14 14 H 1.09005 * 110.48678 * 279.12549 * 13 12 11 15 15 C 1.53002 * 110.48753 * 156.62151 * 13 12 11 16 16 N 1.46503 * 109.47311 * 66.44852 * 15 13 12 17 17 C 1.36932 * 120.00028 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00262 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99842 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99815 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99978 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47296 * 120.00213 * 21 19 17 24 24 H 1.48500 * 109.46831 * 239.99977 * 21 19 17 25 25 C 1.53871 * 110.03678 * 204.31033 * 9 8 6 26 26 C 1.39922 * 118.12036 * 359.97438 * 5 4 3 27 27 C 1.50701 * 120.53654 * 180.02562 * 26 5 4 28 28 C 1.53005 * 117.49838 * 179.81227 * 27 26 5 29 29 C 1.52999 * 117.49713 * 111.15334 * 27 26 5 30 30 N 1.31864 * 118.95072 * 179.73333 * 2 1 3 31 31 H 1.09005 * 109.47155 * 89.99282 * 1 2 3 32 32 H 1.08998 * 109.47365 * 209.99775 * 1 2 3 33 33 H 1.09000 * 109.46517 * 329.99623 * 1 2 3 34 34 H 1.08007 * 120.54029 * 179.97438 * 4 3 2 35 35 H 0.97004 * 119.99929 * 0.02562 * 8 6 5 36 36 H 1.08996 * 110.48619 * 261.57564 * 11 9 8 37 37 H 1.09001 * 110.48306 * 24.22320 * 11 9 8 38 38 H 1.09000 * 110.75145 * 80.37700 * 12 11 9 39 39 H 1.09000 * 110.75631 * 203.74374 * 12 11 9 40 40 H 1.08997 * 109.47519 * 186.45586 * 15 13 12 41 41 H 1.09003 * 109.47055 * 306.45133 * 15 13 12 42 42 H 0.97003 * 119.99429 * 0.02562 * 16 15 13 43 43 H 0.97002 * 119.99948 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.03178 * 0.02562 * 25 9 8 45 45 H 1.09004 * 110.03276 * 121.42716 * 25 9 8 46 46 H 1.09001 * 115.55250 * 325.48204 * 27 26 5 47 47 H 1.08993 * 117.49918 * 0.02562 * 28 27 26 48 48 H 1.09000 * 117.49951 * 145.02447 * 28 27 26 49 49 H 1.08999 * 117.50013 * 214.97849 * 29 27 26 50 50 H 1.08998 * 117.49893 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1539 0.0000 4 6 3.4660 1.2003 0.0005 5 6 4.1855 -0.0003 0.0005 6 6 5.6639 -0.0003 0.0016 7 8 6.2715 -1.0476 0.1089 8 7 6.3379 1.1608 -0.1163 9 6 7.8029 1.1608 -0.1146 10 1 8.1752 0.3777 0.5459 11 6 8.3330 0.9404 -1.5465 12 6 9.5883 1.8439 -1.6300 13 6 9.1612 3.0975 -0.8269 14 1 8.5536 3.7582 -1.4455 15 6 10.3906 3.8405 -0.3000 16 7 11.1476 4.3924 -1.4264 17 6 12.2957 5.1027 -1.1973 18 1 12.6434 5.2557 -0.1863 19 6 13.0127 5.6261 -2.2645 20 7 12.5887 5.4400 -3.4966 21 14 14.5793 6.5944 -1.9520 22 1 14.8369 6.6610 -0.4910 23 1 15.7192 5.9227 -2.6262 24 1 14.4266 7.9699 -2.4905 25 6 8.3296 2.5319 0.3441 26 6 3.4660 -1.2003 0.0005 27 6 4.1856 -2.5245 0.0011 28 6 3.3304 -3.7932 0.0055 29 6 4.0920 -3.3787 1.2669 30 7 2.1453 -1.1538 0.0054 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3632 0.8900 0.5139 34 1 3.9818 2.1492 0.0001 35 1 5.8530 1.9966 -0.2015 36 1 8.6043 -0.1045 -1.6962 37 1 7.5896 1.2515 -2.2805 38 1 10.4451 1.3589 -1.1623 39 1 9.8084 2.1048 -2.6652 40 1 10.0722 4.6508 0.3556 41 1 11.0218 3.1486 0.2577 42 1 10.8355 4.2546 -2.3344 43 1 13.0894 5.8061 -4.2423 44 1 7.4951 3.1972 0.5659 45 1 8.9582 2.4141 1.2268 46 1 5.1222 -2.5509 -0.5558 47 1 2.2474 -3.6701 0.0076 48 1 3.7046 -4.6543 -0.5481 49 1 4.9670 -3.9674 1.5427 50 1 3.5105 -2.9828 2.0995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755748456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:04 Heat of formation + Delta-G solvation = 19.091760 kcal Electronic energy + Delta-G solvation = -29282.031423 eV Core-core repulsion = 25309.042664 eV Total energy + Delta-G solvation = -3972.988759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.55149 -40.83296 -39.20652 -38.24452 -36.46243 -35.15301 -34.44681 -34.05247 -32.86201 -30.29501 -30.05537 -28.75043 -26.59450 -26.07854 -24.82470 -23.93238 -23.29284 -22.28489 -22.05584 -21.37188 -20.94916 -19.10533 -19.03250 -18.70326 -17.47920 -17.23390 -16.71175 -16.67207 -16.22572 -16.06606 -15.79578 -15.70170 -15.24867 -15.07344 -14.96414 -14.54413 -14.47416 -14.27383 -13.58669 -13.53865 -13.35522 -13.16549 -13.04772 -12.84886 -12.82477 -12.77269 -12.51912 -12.43335 -12.34027 -12.11079 -12.08272 -11.76902 -11.61544 -11.57992 -11.53342 -11.45355 -11.25128 -10.91124 -10.70517 -10.50041 -10.42564 -10.05754 -8.96505 -7.94310 -5.21992 -0.71757 -0.15381 1.47620 1.48108 1.58234 1.69750 1.97835 2.49447 2.56751 2.69828 2.86576 2.94562 3.23148 3.39433 3.51163 3.58390 3.62856 3.75329 3.90928 3.96650 4.01068 4.05982 4.16948 4.19427 4.44537 4.51031 4.52889 4.54025 4.63031 4.68378 4.70067 4.72601 4.78634 4.81960 4.85434 4.88111 4.98112 5.07072 5.09287 5.13836 5.17900 5.24440 5.27135 5.30572 5.39496 5.49444 5.54771 5.59314 5.77233 6.28859 6.42314 6.88005 7.09634 7.35089 8.13368 8.35687 9.29509 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.001836 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.731230 B =15243.793173 C =15981.256178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.332 3.668 3 N -0.538 5.538 4 C 0.197 3.803 5 C -0.261 4.261 6 C 0.571 3.429 7 O -0.551 6.551 8 N -0.703 5.703 9 C 0.152 3.848 10 H 0.086 0.914 11 C -0.123 4.123 12 C -0.109 4.109 13 C -0.089 4.089 14 H 0.074 0.926 15 C 0.157 3.843 16 N -0.744 5.744 17 C -0.242 4.242 18 H 0.075 0.925 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.293 1.293 25 C -0.110 4.110 26 C 0.257 3.743 27 C -0.138 4.138 28 C -0.150 4.150 29 C -0.143 4.143 30 N -0.533 5.533 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.204 0.796 35 H 0.412 0.588 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.021 0.979 41 H 0.019 0.981 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.133 0.867 47 H 0.106 0.894 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.653 -14.958 9.745 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 N -0.253 5.253 4 C 0.029 3.971 5 C -0.269 4.269 6 C 0.357 3.643 7 O -0.430 6.430 8 N -0.355 5.355 9 C 0.048 3.952 10 H 0.104 0.896 11 C -0.162 4.162 12 C -0.148 4.148 13 C -0.108 4.108 14 H 0.092 0.908 15 C 0.030 3.970 16 N -0.387 5.387 17 C -0.374 4.374 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.801 3.199 22 H -0.190 1.190 23 H -0.222 1.222 24 H -0.220 1.220 25 C -0.149 4.149 26 C 0.111 3.889 27 C -0.157 4.157 28 C -0.187 4.187 29 C -0.181 4.181 30 N -0.248 5.248 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.220 0.780 35 H 0.250 0.750 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.150 0.850 47 H 0.124 0.876 48 H 0.131 0.869 49 H 0.128 0.872 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.114 -15.603 9.978 32.836 hybrid contribution 1.943 1.086 -0.688 2.330 sum -25.171 -14.517 9.290 30.506 Atomic orbital electron populations 1.20795 0.82837 1.05509 1.05334 1.24245 0.99994 0.82913 0.86177 1.68409 1.09965 1.30212 1.16678 1.23973 0.89586 0.98230 0.85283 1.21502 0.95641 0.96626 1.13089 1.17834 0.86064 0.84175 0.76181 1.90735 1.69918 1.31794 1.50591 1.45990 1.07171 1.08919 1.73433 1.21544 0.78329 0.98574 0.96771 0.89609 1.22691 0.97151 0.99592 0.96765 1.22370 0.97246 0.95365 0.99782 1.22050 0.95578 0.96136 0.96998 0.90782 1.20891 0.91472 0.94661 0.89943 1.42576 1.27096 1.64070 1.04955 1.19689 1.00356 1.24474 0.92901 0.90713 1.25560 1.02823 1.03481 0.95178 1.69820 1.41974 1.52108 0.98177 0.85087 0.79358 0.77703 0.77706 1.19047 1.22181 1.22048 1.22358 1.00120 0.94545 0.97845 1.21172 0.88860 0.94300 0.84531 1.21261 1.01130 0.87013 1.06296 1.23083 0.99255 0.96088 1.00242 1.22916 1.03109 1.01183 0.90923 1.68179 1.08809 1.30692 1.17155 0.87838 0.88411 0.88130 0.77951 0.75008 0.91808 0.90942 0.92271 0.93080 0.96060 0.96339 0.79397 0.94086 0.88634 0.89858 0.84980 0.87589 0.86928 0.87200 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.31 71.24 0.73 -0.07 16 2 C 0.33 5.68 7.64 138.70 1.06 6.74 16 3 N -0.54 -9.37 10.31 -186.78 -1.93 -11.30 16 4 C 0.20 3.00 10.80 85.07 0.92 3.92 16 5 C -0.26 -5.04 5.91 -19.91 -0.12 -5.15 16 6 C 0.57 12.04 7.74 86.79 0.67 12.71 16 7 O -0.55 -14.88 13.23 -3.88 -0.05 -14.93 16 8 N -0.70 -11.76 5.00 -441.99 -2.21 -13.97 16 9 C 0.15 3.11 3.23 45.72 0.15 3.26 16 10 H 0.09 1.97 7.59 -2.39 -0.02 1.95 16 11 C -0.12 -2.94 6.53 31.67 0.21 -2.74 16 12 C -0.11 -3.25 6.01 31.89 0.19 -3.06 16 13 C -0.09 -2.54 2.93 -9.69 -0.03 -2.57 16 14 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 15 C 0.16 5.95 5.55 86.38 0.48 6.43 16 16 N -0.74 -37.33 5.44 -343.45 -1.87 -39.20 16 17 C -0.24 -13.52 9.99 84.04 0.84 -12.68 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 21 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 C -0.11 -2.22 6.14 31.35 0.19 -2.03 16 26 C 0.26 5.44 6.53 42.92 0.28 5.72 16 27 C -0.14 -2.81 4.75 -11.54 -0.05 -2.87 16 28 C -0.15 -2.35 10.05 30.62 0.31 -2.04 16 29 C -0.14 -2.44 10.24 30.62 0.31 -2.12 16 30 N -0.53 -10.52 9.34 -175.03 -1.63 -12.15 16 31 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.20 1.55 6.58 -2.91 -0.02 1.53 16 35 H 0.41 4.44 6.48 -92.71 -0.60 3.83 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 38 H 0.06 1.88 8.02 -2.39 -0.02 1.86 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.02 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.37 19.95 7.52 -92.71 -0.70 19.25 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.10 1.45 7.61 -2.38 -0.02 1.43 16 45 H 0.08 1.67 7.84 -2.38 -0.02 1.65 16 46 H 0.13 3.12 6.15 -2.39 -0.01 3.10 16 47 H 0.11 1.68 7.58 -2.39 -0.02 1.66 16 48 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.02 406.18 0.90 -71.12 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.33 Total: 31.91 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 6.61 Total: -0.58 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -7.36 Total: -135.79 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.05 Total: -14.93 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -72.02 0.90 -71.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755748456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.215 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds