Wall clock time and date at job start Wed Apr 1 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31880 * 118.95330 * 2 1 4 4 C 1.32135 * 120.96618 * 180.02562 * 3 2 1 5 5 C 1.39966 * 118.92293 * 359.97438 * 4 3 2 6 6 C 1.47838 * 120.93967 * 179.97438 * 5 4 3 7 7 O 1.21546 * 120.00228 * 183.68471 * 6 5 4 8 8 N 1.34782 * 119.99559 * 3.68305 * 6 5 4 9 9 C 1.46492 * 119.99426 * 179.97438 * 8 6 5 10 10 H 1.08993 * 110.02620 * 325.70518 * 9 8 6 11 11 C 1.54268 * 110.03349 * 87.09805 * 9 8 6 12 12 C 1.55013 * 104.14004 * 95.68012 * 11 9 8 13 13 C 1.54891 * 102.75024 * 37.95266 * 12 11 9 14 14 H 1.09004 * 110.48300 * 80.72893 * 13 12 11 15 15 C 1.53003 * 110.59738 * 203.30958 * 13 12 11 16 16 N 1.46500 * 109.47607 * 289.84381 * 15 13 12 17 17 C 1.36931 * 120.00327 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99899 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00228 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00003 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00213 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47224 * 59.99737 * 21 19 17 23 23 H 1.48501 * 109.47063 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46678 * 299.99681 * 21 19 17 25 25 C 1.53877 * 110.03332 * 204.31180 * 9 8 6 26 26 C 1.39925 * 118.12363 * 0.02562 * 5 4 3 27 27 C 1.50700 * 120.54059 * 180.02562 * 26 5 4 28 28 C 1.53000 * 117.50043 * 178.13993 * 27 26 5 29 29 C 1.52997 * 117.50245 * 109.47750 * 27 26 5 30 30 N 1.31855 * 118.94973 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46946 * 90.00421 * 1 2 3 32 32 H 1.09007 * 109.47023 * 210.00027 * 1 2 3 33 33 H 1.08999 * 109.46566 * 329.99869 * 1 2 3 34 34 H 1.07999 * 120.53663 * 179.72646 * 4 3 2 35 35 H 0.97000 * 119.99853 * 0.02562 * 8 6 5 36 36 H 1.08997 * 110.49001 * 214.34892 * 11 9 8 37 37 H 1.09003 * 110.48331 * 336.99510 * 11 9 8 38 38 H 1.09000 * 110.76315 * 279.63663 * 12 11 9 39 39 H 1.08998 * 110.90576 * 156.33788 * 12 11 9 40 40 H 1.09006 * 109.46905 * 49.84846 * 15 13 12 41 41 H 1.09004 * 109.47255 * 169.84561 * 15 13 12 42 42 H 0.96999 * 119.99693 * 0.02562 * 16 15 13 43 43 H 0.97000 * 120.00188 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.03092 * 0.02562 * 25 9 8 45 45 H 1.08999 * 110.03610 * 121.38253 * 25 9 8 46 46 H 1.09000 * 115.54934 * 323.80914 * 27 26 5 47 47 H 1.09001 * 117.49657 * 359.97438 * 28 27 26 48 48 H 1.08995 * 117.49718 * 145.02360 * 28 27 26 49 49 H 1.08995 * 117.50237 * 214.98491 * 29 27 26 50 50 H 1.09001 * 117.49551 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 -0.0005 5 6 4.1855 -0.0002 -0.0005 6 6 5.6639 -0.0003 -0.0016 7 8 6.2716 -1.0508 -0.0692 8 7 6.3379 1.1646 0.0723 9 6 7.8028 1.1644 0.0718 10 1 8.1761 0.2834 0.5937 11 6 8.3307 1.1832 -1.3776 12 6 8.6003 2.6827 -1.6632 13 6 9.1602 3.1927 -0.3120 14 1 10.2169 2.9418 -0.2180 15 6 8.9562 4.7033 -0.1806 16 7 9.8425 5.3992 -1.1167 17 6 9.8350 6.7671 -1.1786 18 1 9.1758 7.3331 -0.5369 19 6 10.6744 7.4265 -2.0659 20 7 11.4774 6.7368 -2.8483 21 14 10.6646 9.2926 -2.1498 22 1 11.0352 9.8497 -0.8242 23 1 11.6435 9.7474 -3.1697 24 1 9.3066 9.7641 -2.5229 25 6 8.3303 2.4414 0.7493 26 6 3.4661 -1.2003 -0.0005 27 6 4.1856 -2.5244 0.0001 28 6 3.3311 -3.7928 0.0441 29 6 4.1249 -3.3610 1.2797 30 7 2.1453 -1.1538 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3632 0.8900 0.5139 34 1 3.9817 2.1493 -0.0049 35 1 5.8529 2.0029 0.1266 36 1 9.2533 0.6079 -1.4551 37 1 7.5781 0.7930 -2.0628 38 1 7.6753 3.2000 -1.9178 39 1 9.3383 2.8011 -2.4565 40 1 7.9196 4.9512 -0.4091 41 1 9.1879 5.0140 0.8382 42 1 10.4343 4.8910 -1.6933 43 1 12.0642 7.1975 -3.4681 44 1 7.4963 3.0609 1.0789 45 1 8.9595 2.1800 1.6001 46 1 5.1077 -2.5587 -0.5802 47 1 2.2485 -3.6695 0.0731 48 1 3.6912 -4.6616 -0.5069 49 1 5.0067 -3.9458 1.5410 50 1 3.5641 -2.9538 2.1210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755748457.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:09 Heat of formation + Delta-G solvation = 39.895622 kcal Electronic energy + Delta-G solvation = -29496.247154 eV Core-core repulsion = 25524.160518 eV Total energy + Delta-G solvation = -3972.086635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80531 -39.95122 -38.15216 -37.46995 -34.89722 -34.15649 -33.48422 -33.09535 -31.11459 -29.45009 -28.82772 -27.70866 -25.74183 -24.54567 -24.04276 -22.62138 -22.20952 -21.54493 -21.34472 -20.22083 -19.60422 -18.18279 -17.92177 -17.03873 -16.76715 -16.33407 -15.90867 -15.51930 -15.31758 -14.94853 -14.76386 -14.42985 -14.26688 -13.89996 -13.69495 -13.32092 -13.18291 -13.02730 -12.89479 -12.83125 -12.35726 -12.09114 -12.00791 -11.82803 -11.74975 -11.64148 -11.51862 -11.10294 -10.88360 -10.84561 -10.81597 -10.58369 -10.52490 -10.32861 -10.26661 -9.99083 -9.81068 -9.73946 -9.68365 -9.66912 -9.18444 -8.86897 -6.91875 -5.76752 -3.05190 0.03086 0.58859 2.53074 2.83056 3.23354 3.37700 3.43342 3.47708 3.48806 3.53572 3.65303 3.92310 4.30071 4.45193 4.55940 4.60324 4.68202 4.71862 4.73410 4.76101 4.84710 5.00124 5.07563 5.09881 5.37918 5.40237 5.41545 5.44713 5.52759 5.56858 5.59384 5.61319 5.70615 5.78539 5.83828 5.87354 5.90291 5.96887 6.04437 6.08628 6.23971 6.27175 6.45926 6.51202 6.52537 6.55824 6.78369 6.90303 7.21879 7.61185 7.68505 7.92197 8.42428 9.53415 10.12227 10.46670 11.46072 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016868 B = 0.002061 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.587451 B =13579.953497 C =14773.847585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.340 3.660 3 N -0.525 5.525 4 C 0.191 3.809 5 C -0.248 4.248 6 C 0.571 3.429 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.143 3.857 10 H 0.091 0.909 11 C -0.133 4.133 12 C -0.112 4.112 13 C -0.098 4.098 14 H 0.078 0.922 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.123 4.123 26 C 0.270 3.730 27 C -0.123 4.123 28 C -0.163 4.163 29 C -0.149 4.149 30 N -0.522 5.522 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.153 0.847 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.529 -20.067 7.917 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 N -0.239 5.239 4 C 0.023 3.977 5 C -0.255 4.255 6 C 0.356 3.644 7 O -0.402 6.402 8 N -0.364 5.364 9 C 0.039 3.961 10 H 0.109 0.891 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.117 4.117 14 H 0.096 0.904 15 C 0.034 3.966 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.161 4.161 26 C 0.123 3.877 27 C -0.142 4.142 28 C -0.200 4.200 29 C -0.187 4.187 30 N -0.237 5.237 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.191 0.809 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.170 0.830 47 H 0.124 0.876 48 H 0.117 0.883 49 H 0.122 0.878 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.126 -20.623 7.902 29.879 hybrid contribution 0.978 1.610 -0.304 1.909 sum -19.147 -19.013 7.597 28.033 Atomic orbital electron populations 1.20655 0.85197 1.04523 1.04302 1.23532 0.98489 0.83199 0.87348 1.68306 1.09622 1.30079 1.15941 1.23512 0.89725 0.97653 0.86772 1.21550 0.96237 0.96054 1.11691 1.17696 0.85706 0.84320 0.76660 1.90708 1.69285 1.30676 1.49566 1.46158 1.07854 1.08167 1.74238 1.21721 0.77816 0.99483 0.97104 0.89105 1.22814 1.01071 0.97955 0.95301 1.22524 1.01303 0.93487 0.97642 1.22180 0.99578 0.96098 0.93850 0.90400 1.20682 0.93895 0.88584 0.93482 1.42340 1.46598 1.03710 1.44911 1.19178 1.17979 0.82943 1.16992 0.91333 1.24740 0.99277 0.97849 0.99181 1.69648 1.27626 1.34223 1.26738 0.86272 0.77153 0.85612 0.77169 1.21292 1.21697 1.21303 1.22461 1.00178 0.94853 0.98632 1.20997 0.88360 0.93818 0.84521 1.21413 1.01526 0.86323 1.04934 1.23030 0.99351 0.96670 1.00942 1.22894 1.02766 1.01874 0.91197 1.68119 1.09055 1.30112 1.16387 0.89101 0.89333 0.89190 0.80947 0.76621 0.90757 0.91674 0.91583 0.90936 0.96505 0.96551 0.78240 0.93478 0.90948 0.90709 0.82957 0.87555 0.88289 0.87833 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.31 36.01 0.37 -0.16 16 2 C 0.34 3.32 7.64 -157.07 -1.20 2.12 16 3 N -0.53 -5.40 10.31 -10.39 -0.11 -5.51 16 4 C 0.19 1.79 10.81 -16.77 -0.18 1.60 16 5 C -0.25 -2.63 5.91 -104.69 -0.62 -3.25 16 6 C 0.57 6.47 7.76 -12.33 -0.10 6.37 16 7 O -0.52 -7.13 13.16 5.33 0.07 -7.06 16 8 N -0.71 -7.03 4.99 -53.67 -0.27 -7.30 16 9 C 0.14 1.57 3.23 -66.81 -0.22 1.35 16 10 H 0.09 1.05 7.59 -51.93 -0.39 0.66 16 11 C -0.13 -1.62 6.54 -25.00 -0.16 -1.78 16 12 C -0.11 -1.61 6.20 -24.67 -0.15 -1.77 16 13 C -0.10 -1.46 2.88 -88.96 -0.26 -1.71 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 15 C 0.16 3.08 5.55 -4.04 -0.02 3.05 16 16 N -0.73 -18.15 5.49 -59.90 -0.33 -18.48 16 17 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 21 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 C -0.12 -1.39 6.14 -25.61 -0.16 -1.55 16 26 C 0.27 2.99 6.53 -81.82 -0.53 2.45 16 27 C -0.12 -1.27 4.83 -91.77 -0.44 -1.71 16 28 C -0.16 -1.35 10.05 -26.69 -0.27 -1.61 16 29 C -0.15 -1.29 10.24 -26.69 -0.27 -1.57 16 30 N -0.52 -5.55 9.34 -6.67 -0.06 -5.61 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.17 1.12 6.56 -52.49 -0.34 0.77 16 35 H 0.40 3.15 6.46 -40.82 -0.26 2.89 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.07 0.98 7.97 -51.93 -0.41 0.56 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.32 8.03 -51.93 -0.42 -0.09 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.38 10.03 7.64 -40.82 -0.31 9.72 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.76 7.31 -51.93 -0.38 0.38 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.15 1.76 6.00 -51.93 -0.31 1.45 16 47 H 0.11 0.90 7.58 -51.93 -0.39 0.51 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -32.92 406.20 -11.17 -44.10 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.84 Total: 9.31 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -4.46 Total: -5.47 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.04 Total: -64.31 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.07 Total: -7.06 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.92 -11.17 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755748457.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.992 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds