Wall clock time and date at job start Wed Apr 1 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31883 * 118.95122 * 2 1 4 4 C 1.32135 * 120.96481 * 179.97438 * 3 2 1 5 5 C 1.39969 * 118.92472 * 359.97438 * 4 3 2 6 6 C 1.47826 * 120.94032 * 179.97438 * 5 4 3 7 7 O 1.21547 * 120.00138 * 174.41996 * 6 5 4 8 8 N 1.34780 * 119.99998 * 354.42742 * 6 5 4 9 9 C 1.46499 * 119.99978 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.43579 * 32.45621 * 9 8 6 11 11 C 1.54888 * 110.48762 * 269.77236 * 9 8 6 12 12 C 1.54891 * 102.75226 * 203.37943 * 11 9 8 13 13 C 1.54270 * 104.19165 * 37.94065 * 12 11 9 14 14 H 1.09004 * 110.06669 * 95.70224 * 13 12 11 15 15 C 1.52993 * 110.02972 * 217.10403 * 13 12 11 16 16 N 1.46499 * 109.47666 * 292.17134 * 15 13 12 17 17 C 1.36935 * 120.00280 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00231 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99845 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00047 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47352 * 270.00599 * 21 19 17 23 23 H 1.48499 * 109.46738 * 30.00318 * 21 19 17 24 24 H 1.48497 * 109.47064 * 150.00448 * 21 19 17 25 25 C 1.53868 * 106.60093 * 336.39217 * 13 12 11 26 26 C 1.39926 * 118.11861 * 0.27594 * 5 4 3 27 27 C 1.50703 * 120.53693 * 179.72586 * 26 5 4 28 28 C 1.53001 * 117.49921 * 179.90820 * 27 26 5 29 29 C 1.52998 * 59.99943 * 252.50976 * 28 27 26 30 30 N 1.31854 * 118.95250 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.47097 * 90.00591 * 1 2 3 32 32 H 1.08998 * 109.47393 * 210.00383 * 1 2 3 33 33 H 1.08997 * 109.47698 * 330.00782 * 1 2 3 34 34 H 1.07995 * 120.53591 * 180.02562 * 4 3 2 35 35 H 0.96994 * 119.99997 * 359.97438 * 8 6 5 36 36 H 1.09001 * 110.75669 * 321.69802 * 11 9 8 37 37 H 1.09005 * 110.75448 * 84.87657 * 11 9 8 38 38 H 1.09005 * 110.48402 * 279.26790 * 12 11 9 39 39 H 1.08993 * 110.48500 * 156.62017 * 12 11 9 40 40 H 1.09004 * 109.47036 * 172.16988 * 15 13 12 41 41 H 1.08998 * 109.47380 * 52.17167 * 15 13 12 42 42 H 0.97003 * 119.99901 * 359.97438 * 16 15 13 43 43 H 0.96999 * 119.99864 * 359.97438 * 20 19 17 44 44 H 1.09004 * 110.03355 * 119.27999 * 25 13 12 45 45 H 1.08998 * 110.03330 * 240.71555 * 25 13 12 46 46 H 1.08995 * 115.54943 * 325.61292 * 27 26 5 47 47 H 1.08999 * 117.49771 * 359.97438 * 28 27 26 48 48 H 1.08995 * 117.49620 * 145.02029 * 28 27 26 49 49 H 1.08997 * 117.50043 * 252.51255 * 29 28 27 50 50 H 1.09003 * 117.49895 * 107.48952 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0001 0.0016 6 6 5.6638 -0.0002 0.0016 7 8 6.2715 -1.0477 0.1049 8 7 6.3377 1.1614 -0.1127 9 6 7.8027 1.1614 -0.1121 10 1 8.1835 0.2499 -0.5728 11 6 8.3442 1.3097 1.3314 12 6 9.7629 1.8891 1.1065 13 6 9.5892 2.8675 -0.0736 14 1 9.4421 3.8811 0.2995 15 6 10.8196 2.8170 -0.9815 16 7 11.9744 3.3713 -0.2706 17 6 13.1949 3.4306 -0.8885 18 1 13.3062 3.0693 -1.9002 19 6 14.2889 3.9563 -0.2150 20 7 14.1532 4.3972 1.0178 21 14 15.9542 4.0367 -1.0576 22 1 16.7053 2.7839 -0.7901 23 1 15.7610 4.1950 -2.5215 24 1 16.7199 5.1950 -0.5312 25 6 8.3430 2.4048 -0.8484 26 6 3.4660 -1.2002 -0.0038 27 6 4.1856 -2.5243 -0.0092 28 6 3.3305 -3.7931 -0.0128 29 6 4.0895 -3.3857 1.2516 30 7 2.1453 -1.1537 -0.0005 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 3.9816 2.1493 0.0009 35 1 5.8528 1.9974 -0.1954 36 1 7.7299 2.0037 1.9051 37 1 8.3940 0.3400 1.8268 38 1 10.4621 1.0951 0.8440 39 1 10.1034 2.4202 1.9954 40 1 10.6314 3.4029 -1.8813 41 1 11.0251 1.7829 -1.2578 42 1 11.8742 3.6969 0.6376 43 1 13.2886 4.3551 1.4554 44 1 7.5906 3.1935 -0.8507 45 1 8.6146 2.1443 -1.8713 46 1 5.1233 -2.5475 -0.5643 47 1 2.2475 -3.6700 -0.0109 48 1 3.7056 -4.6512 -0.5705 49 1 4.9639 -3.9758 1.5258 50 1 3.5058 -2.9947 2.0850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755748458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:12 Heat of formation + Delta-G solvation = 17.521017 kcal Electronic energy + Delta-G solvation = -29308.065511 eV Core-core repulsion = 25335.008640 eV Total energy + Delta-G solvation = -3973.056871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57559 -40.86597 -39.33883 -38.28677 -36.74604 -35.28162 -34.52619 -34.09214 -32.81607 -30.24427 -30.07298 -28.71447 -26.56241 -25.95304 -24.85041 -24.21362 -23.31308 -22.36900 -22.09845 -21.58320 -20.87940 -19.36019 -19.03883 -18.74917 -17.52862 -17.34404 -16.90704 -16.75902 -16.18405 -16.11669 -15.77725 -15.68779 -15.38335 -15.22726 -14.98152 -14.90004 -14.46050 -14.30176 -13.68732 -13.59614 -13.36441 -13.10065 -13.03633 -12.81131 -12.80358 -12.63869 -12.53685 -12.49804 -12.38302 -12.10405 -11.87202 -11.83003 -11.77997 -11.61342 -11.50256 -11.27881 -11.19699 -10.92067 -10.77138 -10.51688 -10.44607 -10.08499 -9.10175 -8.40878 -5.33885 -0.74215 -0.17486 1.57635 1.66303 1.68364 1.82717 1.91193 2.46990 2.67683 2.70696 2.84380 2.92020 3.21040 3.38629 3.45137 3.51583 3.57120 3.71341 3.81160 3.93954 3.97553 3.98489 4.03921 4.14607 4.33702 4.41297 4.44058 4.49372 4.54177 4.58409 4.66947 4.67362 4.70165 4.80268 4.83545 4.84376 4.95971 4.96373 5.00528 5.06292 5.10627 5.17598 5.24356 5.28801 5.31513 5.44268 5.48217 5.58479 5.75036 6.38478 6.49607 6.85995 7.06332 7.10104 8.01240 8.11625 9.11503 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.001828 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.483249 B =15313.733006 C =16009.336060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.333 3.667 3 N -0.537 5.537 4 C 0.198 3.802 5 C -0.261 4.261 6 C 0.571 3.429 7 O -0.553 6.553 8 N -0.700 5.700 9 C 0.150 3.850 10 H 0.080 0.920 11 C -0.121 4.121 12 C -0.110 4.110 13 C -0.088 4.088 14 H 0.075 0.925 15 C 0.162 3.838 16 N -0.756 5.756 17 C -0.336 4.336 18 H 0.064 0.936 19 C -0.105 4.105 20 N -0.975 5.975 21 Si 1.130 2.870 22 H -0.286 1.286 23 H -0.273 1.273 24 H -0.291 1.291 25 C -0.109 4.109 26 C 0.258 3.742 27 C -0.139 4.139 28 C -0.148 4.148 29 C -0.146 4.146 30 N -0.533 5.533 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.206 0.794 35 H 0.414 0.586 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.362 0.638 43 H 0.244 0.756 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.132 0.868 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.694 -10.510 -2.097 33.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 N -0.252 5.252 4 C 0.031 3.969 5 C -0.269 4.269 6 C 0.357 3.643 7 O -0.432 6.432 8 N -0.352 5.352 9 C 0.045 3.955 10 H 0.099 0.901 11 C -0.160 4.160 12 C -0.149 4.149 13 C -0.107 4.107 14 H 0.093 0.907 15 C 0.035 3.965 16 N -0.400 5.400 17 C -0.467 4.467 18 H 0.082 0.918 19 C -0.297 4.297 20 N -0.623 5.623 21 Si 0.955 3.045 22 H -0.212 1.212 23 H -0.199 1.199 24 H -0.218 1.218 25 C -0.148 4.148 26 C 0.112 3.888 27 C -0.157 4.157 28 C -0.185 4.185 29 C -0.184 4.184 30 N -0.248 5.248 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.222 0.778 35 H 0.252 0.748 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.194 0.806 43 H 0.055 0.945 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.150 0.850 47 H 0.125 0.875 48 H 0.131 0.869 49 H 0.126 0.874 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -30.707 -10.867 -2.123 32.642 hybrid contribution -0.359 0.128 0.216 0.438 sum -31.065 -10.739 -1.907 32.925 Atomic orbital electron populations 1.20798 0.82802 1.05509 1.05385 1.24251 1.00005 0.82899 0.86089 1.68419 1.09929 1.30157 1.16686 1.23981 0.89566 0.98172 0.85199 1.21471 0.95437 0.96711 1.13243 1.17866 0.86160 0.84100 0.76135 1.90748 1.69973 1.32003 1.50459 1.45796 1.06887 1.08942 1.73605 1.21723 0.78439 0.99355 0.95962 0.90146 1.22783 0.95514 1.01013 0.96644 1.22235 0.96761 0.98080 0.97787 1.21792 0.93831 0.99695 0.95392 0.90695 1.20919 0.86253 0.95229 0.94066 1.42574 1.06491 1.75577 1.15385 1.20430 0.89451 1.37702 0.99156 0.91809 1.27219 1.06201 0.98962 0.97277 1.70964 1.25655 1.51895 1.13759 0.82590 0.71227 0.76491 0.74203 1.21246 1.19862 1.21769 1.22305 0.96482 0.96850 0.99135 1.21158 0.88887 0.94261 0.84510 1.21262 1.01133 0.87055 1.06297 1.23072 0.99288 0.96073 1.00051 1.22903 1.03132 1.01254 0.91064 1.68177 1.08752 1.30751 1.17157 0.87733 0.88473 0.88102 0.77766 0.74798 0.89654 0.92115 0.93278 0.92395 0.96339 0.96840 0.80627 0.94525 0.88137 0.90565 0.85034 0.87477 0.86911 0.87380 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.31 71.24 0.73 -0.01 16 2 C 0.33 5.47 7.64 138.71 1.06 6.53 16 3 N -0.54 -8.86 10.32 -186.80 -1.93 -10.79 16 4 C 0.20 2.84 10.80 85.07 0.92 3.75 16 5 C -0.26 -4.92 5.91 -19.91 -0.12 -5.04 16 6 C 0.57 12.05 7.75 86.78 0.67 12.73 16 7 O -0.55 -15.38 13.21 -3.86 -0.05 -15.43 16 8 N -0.70 -11.40 5.11 -440.34 -2.25 -13.66 16 9 C 0.15 3.16 3.22 46.07 0.15 3.31 16 10 H 0.08 2.06 7.55 -2.39 -0.02 2.05 16 11 C -0.12 -2.80 6.58 31.89 0.21 -2.59 16 12 C -0.11 -3.28 6.08 31.67 0.19 -3.09 16 13 C -0.09 -2.57 2.96 -10.07 -0.03 -2.60 16 14 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 15 C 0.16 6.42 5.31 86.38 0.46 6.88 16 16 N -0.76 -38.60 5.45 -343.47 -1.87 -40.47 16 17 C -0.34 -19.32 9.99 84.03 0.84 -18.48 16 18 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 19 C -0.11 -6.22 5.50 84.86 0.47 -5.75 16 20 N -0.97 -61.55 13.70 21.65 0.30 -61.25 16 21 Si 1.13 52.66 29.92 68.60 2.05 54.71 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 C -0.11 -2.25 6.19 31.32 0.19 -2.06 16 26 C 0.26 5.39 6.53 42.92 0.28 5.67 16 27 C -0.14 -2.85 4.76 -11.54 -0.05 -2.91 16 28 C -0.15 -2.35 10.04 30.59 0.31 -2.04 16 29 C -0.15 -2.57 10.23 30.59 0.31 -2.26 16 30 N -0.53 -10.31 9.34 -175.03 -1.63 -11.94 16 31 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.21 1.27 6.58 -2.91 -0.02 1.25 16 35 H 0.41 3.85 6.54 -92.71 -0.61 3.24 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.05 1.69 7.76 -2.38 -0.02 1.67 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 40 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.01 0.56 8.00 -2.39 -0.02 0.54 16 42 H 0.36 18.98 6.38 -92.71 -0.59 18.38 16 43 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 44 H 0.10 1.46 7.73 -2.39 -0.02 1.44 16 45 H 0.08 1.62 7.67 -2.39 -0.02 1.60 16 46 H 0.13 3.15 6.15 -2.39 -0.01 3.13 16 47 H 0.11 1.69 7.58 -2.39 -0.02 1.67 16 48 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.99 404.27 1.12 -74.87 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.09 Total: 31.91 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 6.59 Total: -7.95 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -7.39 Total: -138.11 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.05 Total: -15.43 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 2.05 Total: 54.71 kcal Total: -75.99 1.12 -74.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755748458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.391 kcal (2) G-P(sol) polarization free energy of solvation -75.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds