Wall clock time and date at job start Wed Apr 1 2020 03:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 111.00006 * 2 1 4 4 C 1.53005 * 109.46872 * 66.04093 * 3 2 1 5 5 C 1.50695 * 109.46904 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99970 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99998 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00148 * 0.02562 * 7 5 4 9 9 C 1.46504 * 119.99846 * 179.97438 * 7 5 4 10 10 C 1.50704 * 109.46889 * 90.00405 * 9 7 5 11 11 H 1.07999 * 120.00164 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00189 * 179.97438 * 10 9 7 13 13 N 1.31520 * 119.99986 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00159 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47264 * 60.00387 * 14 12 10 16 16 H 1.48504 * 109.46913 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47509 * 300.00078 * 14 12 10 18 18 C 1.46893 * 111.00064 * 236.04726 * 2 1 3 19 19 C 1.50698 * 109.47230 * 293.94949 * 18 2 1 20 20 N 1.30112 * 124.94930 * 89.97421 * 19 18 2 21 21 C 1.35785 * 109.64631 * 180.02562 * 20 19 18 22 22 C 1.39735 * 133.60204 * 179.97438 * 21 20 19 23 23 C 1.36605 * 119.88505 * 180.02562 * 22 21 20 24 24 C 1.38772 * 120.67413 * 359.97438 * 23 22 21 25 25 C 1.37857 * 120.44773 * 359.97248 * 24 23 22 26 26 C 1.38836 * 119.69151 * 0.06034 * 25 24 23 27 27 N 1.36038 * 124.95255 * 270.00567 * 19 18 2 28 28 C 1.46497 * 126.35114 * 359.97098 * 27 19 18 29 29 H 1.08998 * 109.46590 * 183.95592 * 1 2 3 30 30 H 1.08989 * 109.47299 * 303.95203 * 1 2 3 31 31 H 1.09000 * 109.46846 * 63.96114 * 1 2 3 32 32 H 1.08992 * 109.47205 * 186.04698 * 3 2 1 33 33 H 1.09001 * 109.46777 * 306.05138 * 3 2 1 34 34 H 1.09000 * 109.47399 * 300.00364 * 4 3 2 35 35 H 1.09004 * 109.47029 * 60.00744 * 4 3 2 36 36 H 1.09000 * 109.46928 * 89.99722 * 8 7 5 37 37 H 1.08996 * 109.46999 * 209.99939 * 8 7 5 38 38 H 1.09003 * 109.47016 * 330.00339 * 8 7 5 39 39 H 1.09002 * 109.47277 * 209.99776 * 9 7 5 40 40 H 1.08994 * 109.47438 * 330.00656 * 9 7 5 41 41 H 0.97003 * 120.00105 * 180.02562 * 13 12 10 42 42 H 1.09010 * 109.47069 * 173.95267 * 18 2 1 43 43 H 1.08998 * 109.47438 * 53.95326 * 18 2 1 44 44 H 1.08000 * 120.05646 * 359.97438 * 22 21 20 45 45 H 1.07999 * 119.66329 * 179.72373 * 23 22 21 46 46 H 1.07998 * 119.77865 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.15633 * 180.02562 * 25 24 23 48 48 H 1.09006 * 109.46837 * 89.99930 * 28 27 19 49 49 H 1.09000 * 109.47673 * 210.00486 * 28 27 19 50 50 H 1.09007 * 109.47163 * 330.00891 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 6 2.1709 3.4645 1.3180 6 8 2.7857 3.8781 0.3578 7 7 1.9702 4.2634 2.3848 8 6 1.2281 3.7637 3.5449 9 6 2.4952 5.6311 2.3848 10 6 1.4627 6.5654 1.8084 11 1 0.5109 6.1790 1.4750 12 6 1.7332 7.9135 1.7066 13 7 2.8925 8.3841 2.1120 14 14 0.4537 9.0715 0.9914 15 1 -0.7808 9.0146 1.8148 16 1 0.9858 10.4579 0.9915 17 1 0.1392 8.6626 -0.4011 18 6 1.9955 -0.7659 -1.1375 19 6 1.6371 -2.2204 -0.9728 20 7 0.5497 -2.7756 -1.4225 21 6 0.5438 -4.0947 -1.1003 22 6 -0.3570 -5.1383 -1.3283 23 6 -0.0760 -6.3930 -0.8669 24 6 1.0984 -6.6452 -0.1719 25 6 2.0021 -5.6312 0.0638 26 6 1.7332 -4.3494 -0.3970 27 7 2.4030 -3.1440 -0.3318 28 6 3.6989 -2.9043 0.3081 29 1 -0.3632 -1.0252 0.0709 30 1 -0.3633 0.5739 0.8524 31 1 -0.3633 0.4511 -0.9234 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9273 -0.8309 34 1 0.5471 2.0845 1.4265 35 1 2.0658 1.5016 2.1492 36 1 1.9215 3.3038 4.2491 37 1 0.7127 4.5921 4.0308 38 1 0.4981 3.0232 3.2178 39 1 2.7267 5.9315 3.4067 40 1 3.4009 5.6727 1.7798 41 1 3.0826 9.3326 2.0408 42 1 3.0799 -0.6610 -1.1756 43 1 1.5612 -0.3872 -2.0628 44 1 -1.2742 -4.9531 -1.8677 45 1 -0.7768 -7.1960 -1.0412 46 1 1.3061 -7.6427 0.1861 47 1 2.9148 -5.8328 0.6048 48 1 3.5434 -2.6268 1.3507 49 1 4.3015 -3.8112 0.2594 50 1 4.2158 -2.0963 -0.2097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092805315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:56 Heat of formation + Delta-G solvation = 51.422647 kcal Electronic energy + Delta-G solvation = -29299.924478 eV Core-core repulsion = 25328.337692 eV Total energy + Delta-G solvation = -3971.586786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.43353 -39.19989 -38.06225 -37.07494 -34.81517 -34.48792 -32.69055 -31.74236 -30.76675 -29.74910 -27.81197 -27.73120 -27.20284 -26.03680 -25.23534 -23.07400 -22.40174 -22.04192 -21.06404 -20.19265 -18.36229 -17.64494 -17.25356 -16.82110 -16.53692 -16.12343 -15.87158 -15.65045 -15.29038 -14.76666 -14.68317 -14.47595 -14.33529 -14.23256 -14.02941 -13.55602 -13.33969 -13.23920 -12.77512 -12.54608 -12.29484 -12.25926 -12.12842 -11.95054 -11.91025 -11.78460 -11.75676 -11.60346 -11.56775 -11.15630 -10.94671 -10.78015 -10.60333 -10.55212 -10.16628 -10.15581 -9.65118 -8.91897 -8.67584 -8.50887 -8.43985 -8.31637 -7.65059 -6.04990 -4.09858 0.67363 1.26342 2.30473 2.46310 3.31224 3.35630 3.36907 3.44556 3.52772 3.67943 3.92725 4.16437 4.18503 4.38467 4.44768 4.67396 4.70806 4.75933 4.88715 4.96503 5.07388 5.13809 5.16012 5.17059 5.25982 5.26951 5.32017 5.35496 5.45138 5.48991 5.55209 5.59742 5.78270 5.85811 5.89856 5.94551 6.03360 6.06072 6.17925 6.21612 6.23872 6.28154 6.60744 6.73641 6.78089 6.90450 7.05063 7.43208 7.53188 7.67403 7.91199 8.22695 8.41285 8.89033 9.08423 9.55213 11.02974 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.001816 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.242926 B =15418.948256 C =15747.158235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.073 3.927 4 C -0.134 4.134 5 C 0.505 3.495 6 O -0.546 6.546 7 N -0.603 5.603 8 C 0.084 3.916 9 C 0.245 3.755 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.061 3.939 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.128 3.872 19 C 0.301 3.699 20 N -0.491 5.491 21 C 0.047 3.953 22 C -0.064 4.064 23 C -0.131 4.131 24 C -0.106 4.106 25 C -0.109 4.109 26 C 0.045 3.955 27 N -0.482 5.482 28 C 0.080 3.920 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.264 0.736 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.120 0.880 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -29.906 -1.723 30.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.055 4.055 4 C -0.175 4.175 5 C 0.291 3.709 6 O -0.424 6.424 7 N -0.335 5.335 8 C -0.060 4.060 9 C 0.126 3.874 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.534 5.534 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.001 4.001 19 C 0.035 3.965 20 N -0.211 5.211 21 C -0.071 4.071 22 C -0.084 4.084 23 C -0.151 4.151 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.064 4.064 27 N -0.171 5.171 28 C -0.062 4.062 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.138 0.862 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.561 -29.272 -2.143 29.392 hybrid contribution -0.343 0.730 -0.419 0.909 sum -1.905 -28.542 -2.562 28.720 Atomic orbital electron populations 1.22499 0.86443 1.02792 1.01097 1.61967 1.09096 1.14531 1.40939 1.21841 1.00853 0.85745 0.97025 1.21636 1.02427 0.94180 0.99244 1.20271 0.80872 0.86733 0.83053 1.90667 1.42049 1.75979 1.33724 1.48161 1.54017 1.15628 1.15683 1.21634 0.95643 0.99796 0.88951 1.19282 0.95481 0.74995 0.97676 1.21393 1.01402 0.92147 1.41606 0.92567 1.24940 0.95643 0.98146 0.95414 1.69925 1.21959 1.14284 1.47219 0.86558 0.81402 0.79652 0.79795 1.20254 1.21158 1.20188 1.20530 1.01075 0.84069 0.94467 1.23371 0.87325 0.93096 0.92724 1.70450 1.19542 1.05925 1.25212 1.19077 0.94853 0.91828 1.01386 1.20021 0.98235 0.90529 0.99616 1.20625 0.97876 0.96474 1.00175 1.20858 0.94061 0.98372 0.99297 1.19939 1.00821 0.89403 1.02849 1.18899 0.95228 0.88026 1.04249 1.45114 1.18857 1.07056 1.46064 1.21992 0.81769 1.03375 0.99058 0.90915 0.90997 0.94831 0.89800 0.93204 0.89441 0.88927 0.93745 0.90841 0.92431 0.95047 0.93845 0.92668 0.88578 0.90663 0.85481 0.85491 0.85431 0.86199 0.90147 0.90052 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.16 60.07 0.55 0.78 16 2 N -0.54 -6.08 4.75 -244.37 -1.16 -7.25 16 3 C 0.07 0.95 4.25 -3.82 -0.02 0.94 16 4 C -0.13 -1.89 4.18 -27.88 -0.12 -2.01 16 5 C 0.50 10.14 7.67 -10.99 -0.08 10.06 16 6 O -0.55 -13.32 15.56 5.55 0.09 -13.23 16 7 N -0.60 -12.63 2.86 -182.95 -0.52 -13.15 16 8 C 0.08 1.31 10.24 59.85 0.61 1.92 16 9 C 0.24 6.40 5.16 -5.19 -0.03 6.37 16 10 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 11 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 14 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.13 1.31 5.25 -4.98 -0.03 1.28 16 19 C 0.30 3.46 6.50 -154.82 -1.01 2.45 16 20 N -0.49 -6.53 10.49 -8.23 -0.09 -6.62 16 21 C 0.05 0.58 7.23 -84.70 -0.61 -0.03 16 22 C -0.06 -0.65 10.05 -39.61 -0.40 -1.04 16 23 C -0.13 -1.03 9.96 -39.97 -0.40 -1.42 16 24 C -0.11 -0.78 10.03 -39.52 -0.40 -1.18 16 25 C -0.11 -0.93 10.05 -39.50 -0.40 -1.33 16 26 C 0.05 0.49 6.88 -83.98 -0.58 -0.08 16 27 N -0.48 -4.85 3.21 -118.50 -0.38 -5.23 16 28 C 0.08 0.51 10.96 59.85 0.66 1.16 16 29 H 0.07 0.90 6.70 -51.93 -0.35 0.55 16 30 H 0.07 0.78 6.30 -51.94 -0.33 0.45 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.10 7.89 -51.93 -0.41 0.69 16 33 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.09 1.13 5.73 -51.93 -0.30 0.84 16 35 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 38 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 39 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.10 0.79 6.80 -51.92 -0.35 0.44 16 43 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 47 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.46 7.00 -51.93 -0.36 0.10 16 LS Contribution 409.09 15.07 6.16 6.16 Total: -1.00 -35.57 409.09 -10.69 -46.25 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.85 Total: -2.19 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -2.66 Total: 4.22 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -1.41 Total: -58.10 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.57 -10.69 -46.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092805315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.677 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds