Wall clock time and date at job start Wed Apr 1 2020 03:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 111.00006 * 2 1 4 4 C 1.53005 * 109.46872 * 66.04093 * 3 2 1 5 5 C 1.50695 * 109.46904 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99970 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99998 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00148 * 0.02562 * 7 5 4 9 9 C 1.46504 * 119.99846 * 179.97438 * 7 5 4 10 10 C 1.50704 * 109.46889 * 90.00405 * 9 7 5 11 11 H 1.07999 * 120.00164 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00189 * 179.97438 * 10 9 7 13 13 N 1.31520 * 119.99986 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00159 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47264 * 60.00387 * 14 12 10 16 16 H 1.48504 * 109.46913 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47509 * 300.00078 * 14 12 10 18 18 C 1.46893 * 111.00064 * 236.04726 * 2 1 3 19 19 C 1.50698 * 109.47230 * 293.94949 * 18 2 1 20 20 N 1.30112 * 124.94930 * 89.97421 * 19 18 2 21 21 C 1.35785 * 109.64631 * 180.02562 * 20 19 18 22 22 C 1.39735 * 133.60204 * 179.97438 * 21 20 19 23 23 C 1.36605 * 119.88505 * 180.02562 * 22 21 20 24 24 C 1.38772 * 120.67413 * 359.97438 * 23 22 21 25 25 C 1.37857 * 120.44773 * 359.97248 * 24 23 22 26 26 C 1.38836 * 119.69151 * 0.06034 * 25 24 23 27 27 N 1.36038 * 124.95255 * 270.00567 * 19 18 2 28 28 C 1.46497 * 126.35114 * 359.97098 * 27 19 18 29 29 H 1.08998 * 109.46590 * 183.95592 * 1 2 3 30 30 H 1.08989 * 109.47299 * 303.95203 * 1 2 3 31 31 H 1.09000 * 109.46846 * 63.96114 * 1 2 3 32 32 H 1.08992 * 109.47205 * 186.04698 * 3 2 1 33 33 H 1.09001 * 109.46777 * 306.05138 * 3 2 1 34 34 H 1.09000 * 109.47399 * 300.00364 * 4 3 2 35 35 H 1.09004 * 109.47029 * 60.00744 * 4 3 2 36 36 H 1.09000 * 109.46928 * 89.99722 * 8 7 5 37 37 H 1.08996 * 109.46999 * 209.99939 * 8 7 5 38 38 H 1.09003 * 109.47016 * 330.00339 * 8 7 5 39 39 H 1.09002 * 109.47277 * 209.99776 * 9 7 5 40 40 H 1.08994 * 109.47438 * 330.00656 * 9 7 5 41 41 H 0.97003 * 120.00105 * 180.02562 * 13 12 10 42 42 H 1.09010 * 109.47069 * 173.95267 * 18 2 1 43 43 H 1.08998 * 109.47438 * 53.95326 * 18 2 1 44 44 H 1.08000 * 120.05646 * 359.97438 * 22 21 20 45 45 H 1.07999 * 119.66329 * 179.72373 * 23 22 21 46 46 H 1.07998 * 119.77865 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.15633 * 180.02562 * 25 24 23 48 48 H 1.09006 * 109.46837 * 89.99930 * 28 27 19 49 49 H 1.09000 * 109.47673 * 210.00486 * 28 27 19 50 50 H 1.09007 * 109.47163 * 330.00891 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 6 2.1709 3.4645 1.3180 6 8 2.7857 3.8781 0.3578 7 7 1.9702 4.2634 2.3848 8 6 1.2281 3.7637 3.5449 9 6 2.4952 5.6311 2.3848 10 6 1.4627 6.5654 1.8084 11 1 0.5109 6.1790 1.4750 12 6 1.7332 7.9135 1.7066 13 7 2.8925 8.3841 2.1120 14 14 0.4537 9.0715 0.9914 15 1 -0.7808 9.0146 1.8148 16 1 0.9858 10.4579 0.9915 17 1 0.1392 8.6626 -0.4011 18 6 1.9955 -0.7659 -1.1375 19 6 1.6371 -2.2204 -0.9728 20 7 0.5497 -2.7756 -1.4225 21 6 0.5438 -4.0947 -1.1003 22 6 -0.3570 -5.1383 -1.3283 23 6 -0.0760 -6.3930 -0.8669 24 6 1.0984 -6.6452 -0.1719 25 6 2.0021 -5.6312 0.0638 26 6 1.7332 -4.3494 -0.3970 27 7 2.4030 -3.1440 -0.3318 28 6 3.6989 -2.9043 0.3081 29 1 -0.3632 -1.0252 0.0709 30 1 -0.3633 0.5739 0.8524 31 1 -0.3633 0.4511 -0.9234 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9273 -0.8309 34 1 0.5471 2.0845 1.4265 35 1 2.0658 1.5016 2.1492 36 1 1.9215 3.3038 4.2491 37 1 0.7127 4.5921 4.0308 38 1 0.4981 3.0232 3.2178 39 1 2.7267 5.9315 3.4067 40 1 3.4009 5.6727 1.7798 41 1 3.0826 9.3326 2.0408 42 1 3.0799 -0.6610 -1.1756 43 1 1.5612 -0.3872 -2.0628 44 1 -1.2742 -4.9531 -1.8677 45 1 -0.7768 -7.1960 -1.0412 46 1 1.3061 -7.6427 0.1861 47 1 2.9148 -5.8328 0.6048 48 1 3.5434 -2.6268 1.3507 49 1 4.3015 -3.8112 0.2594 50 1 4.2158 -2.0963 -0.2097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092805315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:55 Heat of formation + Delta-G solvation = 28.418593 kcal Electronic energy + Delta-G solvation = -29300.922009 eV Core-core repulsion = 25328.337692 eV Total energy + Delta-G solvation = -3972.584317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.15588 -40.72850 -38.93371 -37.90948 -36.56003 -35.18241 -34.74404 -32.88290 -31.42570 -30.71115 -29.59023 -28.55028 -27.78806 -27.37522 -26.58644 -24.73712 -23.08194 -22.97049 -22.12902 -20.94261 -19.88745 -18.69912 -18.32822 -18.04865 -17.89584 -17.21254 -17.05699 -16.77381 -16.53662 -16.18759 -15.88566 -15.65945 -15.17548 -14.97218 -14.94198 -14.65084 -14.20575 -14.11752 -13.95819 -13.86152 -13.62278 -13.48693 -13.43679 -13.22653 -12.88560 -12.84972 -12.76847 -12.65839 -12.61080 -12.47148 -12.42739 -12.33502 -12.18892 -11.89848 -11.70407 -11.29807 -10.92992 -10.64352 -10.59057 -9.58417 -9.40080 -9.24244 -9.02468 -8.22460 -6.37309 -0.01370 0.59856 1.36092 1.40135 1.47397 1.60596 1.73178 1.86192 2.30218 2.43060 2.85423 2.97179 3.06806 3.23087 3.48376 3.81715 3.87150 3.90195 4.06224 4.11875 4.15170 4.20809 4.30571 4.41495 4.44007 4.49864 4.52569 4.55814 4.57742 4.65348 4.70079 4.74208 4.77327 4.89398 4.90243 4.95475 4.98218 5.04809 5.07929 5.24289 5.24564 5.50026 5.56329 5.60775 5.62382 5.80301 5.83267 5.85051 6.00647 6.06422 6.18153 6.69745 6.80997 6.90280 7.28394 7.49982 8.84116 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.001816 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.242926 B =15418.948256 C =15747.158235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.530 5.530 3 C 0.082 3.918 4 C -0.115 4.115 5 C 0.496 3.504 6 O -0.599 6.599 7 N -0.612 5.612 8 C 0.079 3.921 9 C 0.258 3.742 10 C -0.543 4.543 11 H 0.052 0.948 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.966 3.034 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.130 3.870 19 C 0.289 3.711 20 N -0.525 5.525 21 C 0.010 3.990 22 C -0.087 4.087 23 C -0.125 4.125 24 C -0.102 4.102 25 C -0.115 4.115 26 C 0.030 3.970 27 N -0.481 5.481 28 C 0.073 3.927 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.023 0.977 40 H -0.001 1.001 41 H 0.267 0.733 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.127 0.873 45 H 0.155 0.845 46 H 0.161 0.839 47 H 0.144 0.856 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 -32.319 -0.620 32.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.255 5.255 3 C -0.046 4.046 4 C -0.155 4.155 5 C 0.285 3.715 6 O -0.481 6.481 7 N -0.343 5.343 8 C -0.063 4.063 9 C 0.137 3.863 10 C -0.582 4.582 11 H 0.071 0.929 12 C -0.192 4.192 13 N -0.567 5.567 14 Si 0.791 3.209 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.204 1.204 18 C 0.001 3.999 19 C 0.023 3.977 20 N -0.246 5.246 21 C -0.109 4.109 22 C -0.107 4.107 23 C -0.145 4.145 24 C -0.121 4.121 25 C -0.136 4.136 26 C -0.080 4.080 27 N -0.170 5.170 28 C -0.068 4.068 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.017 0.983 41 H 0.076 0.924 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.145 0.855 45 H 0.172 0.828 46 H 0.179 0.821 47 H 0.162 0.838 48 H 0.103 0.897 49 H 0.119 0.881 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.352 -31.726 -0.997 31.828 hybrid contribution -0.078 1.351 -0.745 1.545 sum -2.430 -30.375 -1.742 30.522 Atomic orbital electron populations 1.22455 0.86527 1.02265 1.01168 1.61946 1.08922 1.13182 1.41445 1.21674 1.00774 0.86349 0.95844 1.21547 1.03253 0.90001 1.00735 1.21314 0.79799 0.88660 0.81740 1.90638 1.44361 1.77458 1.35641 1.48197 1.54403 1.13897 1.17789 1.21925 0.96523 1.00300 0.87573 1.18748 0.93659 0.78043 0.95885 1.21682 1.01627 0.93034 1.41856 0.92932 1.25859 0.97772 0.99942 0.95647 1.70044 1.23762 1.14809 1.48094 0.85488 0.79186 0.77474 0.78783 1.18504 1.20307 1.20391 1.20568 1.02166 0.83514 0.93674 1.23395 0.87511 0.93481 0.93313 1.70360 1.20870 1.06960 1.26431 1.19509 0.96461 0.91977 1.02919 1.20259 0.98417 0.91250 1.00779 1.21005 0.98509 0.96159 0.98842 1.21319 0.93211 0.99582 0.97985 1.20323 1.02004 0.88568 1.02671 1.19248 0.95057 0.89088 1.04590 1.45287 1.19562 1.06514 1.45602 1.22259 0.80552 1.04859 0.99084 0.91840 0.89953 0.95549 0.89823 0.95299 0.87527 0.86012 0.91024 0.91789 0.88840 0.95910 0.98300 0.92409 0.86588 0.91386 0.85464 0.82757 0.82125 0.83826 0.89734 0.88103 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.16 127.69 1.17 1.70 16 2 N -0.53 -11.34 4.75 -927.06 -4.41 -15.74 16 3 C 0.08 2.06 4.25 86.30 0.37 2.42 16 4 C -0.12 -3.01 4.18 29.85 0.12 -2.88 16 5 C 0.50 19.87 7.67 87.66 0.67 20.54 16 6 O -0.60 -30.19 15.56 -3.05 -0.05 -30.24 16 7 N -0.61 -25.52 2.86 -851.12 -2.43 -27.95 16 8 C 0.08 2.28 10.24 127.77 1.31 3.59 16 9 C 0.26 13.94 5.16 85.63 0.44 14.38 16 10 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 11 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 12 C 0.01 0.40 5.46 84.65 0.46 0.86 16 13 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 14 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 15 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 C 0.13 2.61 5.25 85.56 0.45 3.06 16 19 C 0.29 6.61 6.50 137.92 0.90 7.51 16 20 N -0.52 -14.36 10.49 -179.96 -1.89 -16.25 16 21 C 0.01 0.24 7.23 39.45 0.29 0.53 16 22 C -0.09 -1.74 10.05 22.25 0.22 -1.52 16 23 C -0.13 -1.71 9.96 22.02 0.22 -1.49 16 24 C -0.10 -1.20 10.03 22.31 0.22 -0.98 16 25 C -0.11 -1.69 10.05 22.32 0.22 -1.47 16 26 C 0.03 0.62 6.88 38.86 0.27 0.89 16 27 N -0.48 -9.21 3.21 -528.81 -1.70 -10.91 16 28 C 0.07 0.78 10.96 127.77 1.40 2.18 16 29 H 0.06 1.56 6.70 -2.39 -0.02 1.54 16 30 H 0.08 1.61 6.30 -2.39 -0.02 1.60 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 2.13 7.89 -2.39 -0.02 2.11 16 33 H 0.03 0.85 8.08 -2.39 -0.02 0.83 16 34 H 0.11 2.43 5.73 -2.39 -0.01 2.41 16 35 H 0.12 2.55 8.11 -2.38 -0.02 2.53 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 38 H 0.09 2.03 6.44 -2.39 -0.02 2.02 16 39 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 40 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.12 1.80 6.80 -2.38 -0.02 1.78 16 43 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 44 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 46 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 47 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 48 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.10 0.84 7.00 -2.38 -0.02 0.82 16 Total: -1.00 -81.46 409.09 1.75 -79.72 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.93 Total: 12.09 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 8.98 Total: 18.12 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -10.14 Total: -126.81 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -81.46 1.75 -79.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092805315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.135 kcal (2) G-P(sol) polarization free energy of solvation -81.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds