Wall clock time and date at job start Wed Apr 1 2020 03:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47229 * 2 1 4 4 C 1.46503 * 120.00448 * 270.00087 * 3 2 1 5 5 C 1.50694 * 109.47087 * 270.00306 * 4 3 2 6 6 H 1.07996 * 120.00391 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00188 * 179.97438 * 5 4 3 8 8 N 1.31505 * 120.00386 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99658 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46989 * 89.99396 * 9 7 5 11 11 H 1.48498 * 109.47211 * 209.99479 * 9 7 5 12 12 H 1.48507 * 109.47192 * 329.99670 * 9 7 5 13 13 C 1.34783 * 119.99976 * 90.00324 * 3 2 1 14 14 O 1.21276 * 120.00069 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99758 * 359.97438 * 13 3 2 16 16 C 1.52997 * 109.47036 * 179.97438 * 15 13 3 17 17 C 1.50699 * 109.47416 * 179.97438 * 16 15 13 18 18 C 1.40246 * 120.27273 * 269.98291 * 17 16 15 19 19 C 1.50701 * 119.85869 * 359.97438 * 18 17 16 20 20 N 1.31220 * 120.27945 * 179.97438 * 18 17 16 21 21 C 1.33984 * 120.81173 * 0.04296 * 20 18 17 22 22 C 1.38854 * 132.57082 * 179.97438 * 21 20 18 23 23 C 1.38669 * 107.64439 * 179.97438 * 22 21 20 24 24 C 1.50706 * 125.50095 * 179.97438 * 23 22 21 25 25 N 1.31411 * 108.99032 * 0.24348 * 23 22 21 26 26 N 1.37160 * 120.54089 * 359.95320 * 21 20 18 27 27 C 1.35521 * 120.27197 * 90.00037 * 17 16 15 28 28 C 1.50704 * 120.43953 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46764 * 299.99557 * 1 2 3 31 31 H 1.09000 * 109.47004 * 59.99312 * 1 2 3 32 32 H 1.09003 * 109.46764 * 240.00443 * 2 1 3 33 33 H 1.09000 * 109.47004 * 120.00688 * 2 1 3 34 34 H 1.08998 * 109.46808 * 30.00024 * 4 3 2 35 35 H 1.08997 * 109.47321 * 149.99588 * 4 3 2 36 36 H 0.97004 * 119.99884 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47185 * 60.00103 * 15 13 3 38 38 H 1.09002 * 109.47210 * 300.00030 * 15 13 3 39 39 H 1.09004 * 109.46954 * 60.00079 * 16 15 13 40 40 H 1.09002 * 109.47242 * 300.00128 * 16 15 13 41 41 H 1.09001 * 109.47210 * 90.00720 * 19 18 17 42 42 H 1.09003 * 109.46632 * 209.99865 * 19 18 17 43 43 H 1.08998 * 109.47365 * 330.00188 * 19 18 17 44 44 H 1.07999 * 126.18050 * 359.96629 * 22 21 20 45 45 H 1.08999 * 109.47015 * 90.00504 * 24 23 22 46 46 H 1.09000 * 109.46646 * 209.99656 * 24 23 22 47 47 H 1.09000 * 109.47248 * 330.00374 * 24 23 22 48 48 H 1.09005 * 109.46946 * 269.97529 * 28 27 17 49 49 H 1.08993 * 109.46953 * 29.97735 * 28 27 17 50 50 H 1.09000 * 109.46666 * 149.97939 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0959 7 6 4.1491 2.3897 -2.8779 8 7 5.3912 2.1834 -3.2574 9 14 3.0128 3.4354 -3.9291 10 1 3.1163 4.8556 -3.5078 11 1 3.4057 3.3124 -5.3559 12 1 1.6130 2.9694 -3.7591 13 6 2.2430 2.0165 1.1673 14 8 2.6478 3.1597 1.1673 15 6 1.9914 1.3062 2.4723 16 6 2.3236 2.2432 3.6352 17 6 2.0713 1.5333 4.9403 18 6 0.8116 1.6055 5.5525 19 6 -0.2941 2.3969 4.9027 20 7 0.5917 0.9869 6.6887 21 6 1.5612 0.2787 7.2834 22 6 1.6002 -0.4563 8.4608 23 6 2.8761 -0.9851 8.5841 24 6 3.3586 -1.8512 9.7192 25 7 3.5982 -0.6044 7.5543 26 7 2.8056 0.1856 6.7141 27 6 3.0600 0.8200 5.5323 28 6 4.4223 0.7283 4.8944 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1410 -1.1383 36 1 5.7173 2.5740 -4.0833 37 1 2.6212 0.4184 2.5302 38 1 0.9433 1.0125 2.5299 39 1 1.6940 3.1312 3.5775 40 1 3.3718 2.5366 3.5775 41 1 -0.8587 1.7492 4.2320 42 1 -0.9586 2.7914 5.6715 43 1 0.1352 3.2223 4.3349 44 1 0.7842 -0.5917 9.1552 45 1 3.1770 -2.8988 9.4794 46 1 4.4266 -1.6926 9.8685 47 1 2.8213 -1.5885 10.6304 48 1 4.4536 -0.1328 4.2267 49 1 4.6188 1.6368 4.3252 50 1 5.1797 0.6144 5.6700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267412000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:07 Heat of formation + Delta-G solvation = 66.483109 kcal Electronic energy + Delta-G solvation = -30246.110108 eV Core-core repulsion = 26275.176393 eV Total energy + Delta-G solvation = -3970.933715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.56694 -39.59512 -38.77978 -35.73315 -35.40896 -34.37864 -32.78108 -31.38005 -31.01755 -30.35872 -28.74592 -28.55184 -28.01044 -27.17578 -24.37717 -23.03606 -22.33311 -22.11847 -21.37244 -20.25271 -18.61344 -18.38659 -17.00805 -16.89429 -16.47266 -16.31771 -15.58789 -15.41242 -15.04068 -14.40573 -14.30128 -14.07620 -13.86658 -13.74029 -13.54814 -13.42624 -13.34429 -13.21093 -13.11424 -12.99649 -12.71957 -12.60239 -12.42317 -12.27523 -12.18145 -11.99823 -11.79194 -11.75688 -11.44388 -11.21202 -11.05612 -10.93939 -10.73835 -10.64216 -10.52135 -10.19594 -9.94163 -9.58693 -9.34391 -9.05108 -8.62646 -7.97456 -7.78669 -6.12464 -4.11348 0.35634 0.69883 1.85479 2.36197 3.17293 3.25797 3.26250 3.31931 3.33697 3.55463 3.73148 3.82785 4.03514 4.35951 4.45141 4.59052 4.76951 4.87942 4.98273 5.04949 5.06664 5.13493 5.17022 5.21190 5.22430 5.25867 5.29783 5.32396 5.34711 5.40591 5.44203 5.50131 5.57440 5.58906 5.67917 5.69146 5.75964 5.90002 5.93932 6.04475 6.09571 6.19269 6.26204 6.34356 6.44252 6.66819 6.90190 7.28567 7.29933 7.49214 7.57271 8.19158 8.42645 8.86997 8.92737 9.47846 11.00838 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.002441 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.047006 B =11468.590201 C =12018.572543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.592 5.592 4 C 0.216 3.784 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.541 6.541 15 C -0.136 4.136 16 C -0.053 4.053 17 C -0.187 4.187 18 C 0.222 3.778 19 C -0.114 4.114 20 N -0.477 5.477 21 C 0.267 3.733 22 C -0.275 4.275 23 C 0.111 3.889 24 C -0.073 4.073 25 N -0.316 5.316 26 N -0.309 5.309 27 C 0.199 3.801 28 C -0.125 4.125 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.158 0.842 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 -6.475 20.723 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.323 5.323 4 C 0.095 3.905 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.418 6.418 15 C -0.176 4.176 16 C -0.091 4.091 17 C -0.194 4.194 18 C 0.058 3.942 19 C -0.171 4.171 20 N -0.190 5.190 21 C 0.039 3.961 22 C -0.305 4.305 23 C -0.048 4.048 24 C -0.132 4.132 25 N -0.142 5.142 26 N -0.080 5.080 27 C 0.083 3.917 28 C -0.182 4.182 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.176 0.824 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.114 0.886 49 H 0.121 0.879 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.451 -6.047 20.654 23.504 hybrid contribution -0.520 0.338 -0.704 0.938 sum -9.971 -5.708 19.950 23.022 Atomic orbital electron populations 1.22232 0.96736 1.01618 1.02234 1.21444 0.93422 0.83876 1.03103 1.47949 1.63918 1.13344 1.07106 1.19648 0.97303 0.93379 0.80136 1.21309 0.95321 1.32943 1.07112 0.90812 1.24862 0.94991 0.95820 0.97369 1.69891 1.15127 1.44956 1.23574 0.86856 0.81450 0.81606 0.79799 1.19899 1.21092 1.19089 1.20240 0.78307 0.86908 0.85034 1.90676 1.45747 1.18165 1.87254 1.21710 1.03491 0.99688 0.92757 1.20305 1.04763 0.97287 0.86761 1.20168 0.93323 1.04633 1.01249 1.21819 0.93594 0.90230 0.88522 1.20950 0.95542 0.99529 1.01042 1.68075 1.29357 1.10873 1.10740 1.20707 0.81739 0.98184 0.95437 1.20751 0.99576 1.10470 0.99748 1.22255 0.92019 0.95830 0.94667 1.20264 1.02208 0.97645 0.93085 1.77786 1.16054 1.15764 1.04593 1.47041 1.11049 1.34066 1.15833 1.20537 0.98366 0.90045 0.82712 1.21115 0.90095 1.05372 1.01617 0.92015 0.92948 0.92165 0.89742 0.91460 0.95327 0.94560 0.92549 0.89349 0.89283 0.88736 0.89002 0.89009 0.89628 0.88898 0.82414 0.89921 0.90477 0.89893 0.88606 0.87858 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.11 1.52 5.93 -4.05 -0.02 1.50 16 3 N -0.59 -11.21 2.46 -175.07 -0.43 -11.64 16 4 C 0.22 5.03 4.23 -5.19 -0.02 5.01 16 5 C -0.53 -14.68 9.94 -34.44 -0.34 -15.02 16 6 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 9 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 13 C 0.51 9.18 7.67 -10.98 -0.08 9.10 16 14 O -0.54 -11.96 15.56 5.56 0.09 -11.87 16 15 C -0.14 -1.68 4.23 -27.89 -0.12 -1.80 16 16 C -0.05 -0.60 3.84 -27.89 -0.11 -0.71 16 17 C -0.19 -2.12 5.12 -104.84 -0.54 -2.66 16 18 C 0.22 2.51 6.83 -82.10 -0.56 1.95 16 19 C -0.11 -0.93 9.80 36.01 0.35 -0.57 16 20 N -0.48 -6.34 10.40 -8.46 -0.09 -6.42 16 21 C 0.27 3.73 7.92 -155.52 -1.23 2.50 16 22 C -0.27 -3.34 10.83 -39.19 -0.42 -3.76 16 23 C 0.11 1.27 7.16 -82.61 -0.59 0.68 16 24 C -0.07 -0.51 10.43 36.01 0.38 -0.13 16 25 N -0.32 -4.33 12.52 33.53 0.42 -3.91 16 26 N -0.31 -4.29 3.90 -8.49 -0.03 -4.32 16 27 C 0.20 2.43 6.86 -81.47 -0.56 1.88 16 28 C -0.13 -1.30 9.69 36.01 0.35 -0.95 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.55 7.22 -51.93 -0.37 0.18 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 33 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 34 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 35 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 37 H 0.09 1.02 7.40 -51.93 -0.38 0.63 16 38 H 0.09 0.91 7.18 -51.93 -0.37 0.54 16 39 H 0.09 1.05 5.97 -51.93 -0.31 0.74 16 40 H 0.09 1.12 5.91 -51.93 -0.31 0.81 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.69 6.01 -51.93 -0.31 0.38 16 44 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.10 1.00 5.95 -51.93 -0.31 0.69 16 50 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 LS Contribution 405.02 15.07 6.10 6.10 Total: -1.00 -35.82 405.02 -8.74 -44.56 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.67 Total: 0.10 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.24 Total: -2.64 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.64 Total: -52.67 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.82 -8.74 -44.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267412000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.042 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds