Wall clock time and date at job start Wed Apr 1 2020 03:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47229 * 2 1 4 4 C 1.46503 * 120.00448 * 270.00087 * 3 2 1 5 5 C 1.50694 * 109.47087 * 270.00306 * 4 3 2 6 6 H 1.07996 * 120.00391 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00188 * 179.97438 * 5 4 3 8 8 N 1.31505 * 120.00386 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99658 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46989 * 89.99396 * 9 7 5 11 11 H 1.48498 * 109.47211 * 209.99479 * 9 7 5 12 12 H 1.48507 * 109.47192 * 329.99670 * 9 7 5 13 13 C 1.34783 * 119.99976 * 90.00324 * 3 2 1 14 14 O 1.21276 * 120.00069 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99758 * 359.97438 * 13 3 2 16 16 C 1.52997 * 109.47036 * 179.97438 * 15 13 3 17 17 C 1.50699 * 109.47416 * 179.97438 * 16 15 13 18 18 C 1.40246 * 120.27273 * 269.98291 * 17 16 15 19 19 C 1.50701 * 119.85869 * 359.97438 * 18 17 16 20 20 N 1.31220 * 120.27945 * 179.97438 * 18 17 16 21 21 C 1.33984 * 120.81173 * 0.04296 * 20 18 17 22 22 C 1.38854 * 132.57082 * 179.97438 * 21 20 18 23 23 C 1.38669 * 107.64439 * 179.97438 * 22 21 20 24 24 C 1.50706 * 125.50095 * 179.97438 * 23 22 21 25 25 N 1.31411 * 108.99032 * 0.24348 * 23 22 21 26 26 N 1.37160 * 120.54089 * 359.95320 * 21 20 18 27 27 C 1.35521 * 120.27197 * 90.00037 * 17 16 15 28 28 C 1.50704 * 120.43953 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46764 * 299.99557 * 1 2 3 31 31 H 1.09000 * 109.47004 * 59.99312 * 1 2 3 32 32 H 1.09003 * 109.46764 * 240.00443 * 2 1 3 33 33 H 1.09000 * 109.47004 * 120.00688 * 2 1 3 34 34 H 1.08998 * 109.46808 * 30.00024 * 4 3 2 35 35 H 1.08997 * 109.47321 * 149.99588 * 4 3 2 36 36 H 0.97004 * 119.99884 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47185 * 60.00103 * 15 13 3 38 38 H 1.09002 * 109.47210 * 300.00030 * 15 13 3 39 39 H 1.09004 * 109.46954 * 60.00079 * 16 15 13 40 40 H 1.09002 * 109.47242 * 300.00128 * 16 15 13 41 41 H 1.09001 * 109.47210 * 90.00720 * 19 18 17 42 42 H 1.09003 * 109.46632 * 209.99865 * 19 18 17 43 43 H 1.08998 * 109.47365 * 330.00188 * 19 18 17 44 44 H 1.07999 * 126.18050 * 359.96629 * 22 21 20 45 45 H 1.08999 * 109.47015 * 90.00504 * 24 23 22 46 46 H 1.09000 * 109.46646 * 209.99656 * 24 23 22 47 47 H 1.09000 * 109.47248 * 330.00374 * 24 23 22 48 48 H 1.09005 * 109.46946 * 269.97529 * 28 27 17 49 49 H 1.08993 * 109.46953 * 29.97735 * 28 27 17 50 50 H 1.09000 * 109.46666 * 149.97939 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0959 7 6 4.1491 2.3897 -2.8779 8 7 5.3912 2.1834 -3.2574 9 14 3.0128 3.4354 -3.9291 10 1 3.1163 4.8556 -3.5078 11 1 3.4057 3.3124 -5.3559 12 1 1.6130 2.9694 -3.7591 13 6 2.2430 2.0165 1.1673 14 8 2.6478 3.1597 1.1673 15 6 1.9914 1.3062 2.4723 16 6 2.3236 2.2432 3.6352 17 6 2.0713 1.5333 4.9403 18 6 0.8116 1.6055 5.5525 19 6 -0.2941 2.3969 4.9027 20 7 0.5917 0.9869 6.6887 21 6 1.5612 0.2787 7.2834 22 6 1.6002 -0.4563 8.4608 23 6 2.8761 -0.9851 8.5841 24 6 3.3586 -1.8512 9.7192 25 7 3.5982 -0.6044 7.5543 26 7 2.8056 0.1856 6.7141 27 6 3.0600 0.8200 5.5323 28 6 4.4223 0.7283 4.8944 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1410 -1.1383 36 1 5.7173 2.5740 -4.0833 37 1 2.6212 0.4184 2.5302 38 1 0.9433 1.0125 2.5299 39 1 1.6940 3.1312 3.5775 40 1 3.3718 2.5366 3.5775 41 1 -0.8587 1.7492 4.2320 42 1 -0.9586 2.7914 5.6715 43 1 0.1352 3.2223 4.3349 44 1 0.7842 -0.5917 9.1552 45 1 3.1770 -2.8988 9.4794 46 1 4.4266 -1.6926 9.8685 47 1 2.8213 -1.5885 10.6304 48 1 4.4536 -0.1328 4.2267 49 1 4.6188 1.6368 4.3252 50 1 5.1797 0.6144 5.6700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267412000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:06 Heat of formation + Delta-G solvation = 44.841662 kcal Electronic energy + Delta-G solvation = -30247.048552 eV Core-core repulsion = 26275.176393 eV Total energy + Delta-G solvation = -3971.872159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.46433 -40.88936 -39.80308 -37.03895 -36.48238 -35.32902 -34.78952 -32.47055 -31.80308 -31.66793 -29.93308 -29.35909 -29.10863 -28.30011 -25.57877 -24.34364 -23.66608 -23.01423 -22.45059 -21.12915 -19.78376 -19.50445 -19.07533 -18.09626 -17.43109 -17.37264 -17.06359 -16.61392 -16.14496 -15.88337 -15.39250 -14.95494 -14.78614 -14.69813 -14.60476 -14.56493 -14.49632 -14.30229 -13.97301 -13.80643 -13.72717 -13.66848 -13.59017 -13.34468 -13.29364 -13.14787 -12.97171 -12.83499 -12.57814 -12.50034 -12.33129 -12.09068 -12.01827 -11.95574 -11.73585 -11.71769 -11.51768 -10.86336 -10.81079 -10.61617 -10.17150 -9.36752 -8.89361 -8.32022 -6.36426 -0.52451 -0.21447 0.97353 1.34293 1.37793 1.46035 1.50202 1.85940 2.23721 2.32355 2.39164 2.72665 2.97454 3.02781 3.19864 3.47723 3.74681 3.85545 4.00687 4.05230 4.11716 4.17501 4.25924 4.27756 4.38502 4.42868 4.44277 4.58016 4.64756 4.66531 4.69368 4.71484 4.73339 4.79318 4.81748 4.85440 4.98165 4.98398 5.03657 5.04454 5.07929 5.09363 5.13747 5.35207 5.42019 5.46984 5.49926 5.61726 5.69230 6.26317 6.40533 6.59446 6.65281 6.76953 7.24499 7.47622 8.84735 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.002441 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.047006 B =11468.590201 C =12018.572543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.225 3.775 5 C -0.532 4.532 6 H 0.029 0.971 7 C 0.009 3.991 8 N -0.946 5.946 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.238 1.238 13 C 0.502 3.498 14 O -0.589 6.589 15 C -0.121 4.121 16 C -0.045 4.045 17 C -0.182 4.182 18 C 0.223 3.777 19 C -0.113 4.113 20 N -0.495 5.495 21 C 0.242 3.758 22 C -0.284 4.284 23 C 0.110 3.890 24 C -0.071 4.071 25 N -0.346 5.346 26 N -0.322 5.322 27 C 0.186 3.814 28 C -0.122 4.122 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.021 0.979 36 H 0.267 0.733 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.176 0.824 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.107 0.893 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.027 -7.139 21.578 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.332 5.332 4 C 0.102 3.898 5 C -0.571 4.571 6 H 0.048 0.952 7 C -0.189 4.189 8 N -0.587 5.587 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.161 1.161 13 C 0.291 3.709 14 O -0.470 6.470 15 C -0.161 4.161 16 C -0.084 4.084 17 C -0.188 4.188 18 C 0.060 3.940 19 C -0.170 4.170 20 N -0.209 5.209 21 C 0.015 3.985 22 C -0.314 4.314 23 C -0.048 4.048 24 C -0.129 4.129 25 N -0.172 5.172 26 N -0.093 5.093 27 C 0.071 3.929 28 C -0.179 4.179 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.119 0.881 44 H 0.193 0.807 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.124 0.876 48 H 0.120 0.880 49 H 0.125 0.875 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.262 -6.757 21.531 25.682 hybrid contribution 0.425 0.482 -0.882 1.091 sum -11.837 -6.275 20.648 24.614 Atomic orbital electron populations 1.22165 0.93923 1.03468 1.02405 1.21737 0.95669 0.81346 1.03666 1.48061 1.64138 1.15007 1.05977 1.19277 0.94571 0.93170 0.82758 1.21571 0.97134 1.31816 1.06531 0.95237 1.25847 0.96652 0.97306 0.99046 1.70049 1.17435 1.46694 1.24478 0.85742 0.80543 0.79127 0.77709 1.20090 1.20381 1.16087 1.21179 0.76819 0.86516 0.86360 1.90650 1.47751 1.20509 1.88067 1.21667 1.05684 0.99355 0.89385 1.20205 1.04333 0.97349 0.86469 1.20093 0.93370 1.04375 1.00982 1.22319 0.94257 0.89546 0.87925 1.21090 0.94829 0.99638 1.01433 1.68147 1.29366 1.11780 1.11598 1.21167 0.82126 0.98925 0.96304 1.21137 1.00419 1.10181 0.99671 1.22962 0.91654 0.95350 0.94839 1.20451 1.02596 0.97582 0.92313 1.77732 1.17143 1.16758 1.05577 1.47184 1.11163 1.34639 1.16314 1.20867 0.99162 0.90148 0.82697 1.21122 0.89411 1.05806 1.01511 0.89291 0.91379 0.93409 0.91380 0.88856 0.93724 0.96089 0.92398 0.88117 0.86083 0.88081 0.90102 0.87117 0.88925 0.88090 0.80652 0.88443 0.90163 0.87646 0.87961 0.87466 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.24 71.98 0.74 -2.43 16 2 C 0.10 2.63 5.93 86.38 0.51 3.14 16 3 N -0.60 -22.23 2.46 -826.17 -2.03 -24.26 16 4 C 0.22 10.42 4.23 85.63 0.36 10.78 16 5 C -0.53 -30.35 9.94 25.60 0.25 -30.10 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 7 C 0.01 0.54 5.47 84.66 0.46 1.00 16 8 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 9 Si 0.95 43.53 27.47 68.60 1.88 45.42 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 13 C 0.50 17.68 7.67 87.66 0.67 18.35 16 14 O -0.59 -26.22 15.56 -3.02 -0.05 -26.26 16 15 C -0.12 -2.72 4.23 29.85 0.13 -2.60 16 16 C -0.04 -0.97 3.84 29.85 0.11 -0.85 16 17 C -0.18 -3.88 5.12 -20.01 -0.10 -3.98 16 18 C 0.22 4.64 6.83 43.14 0.29 4.93 16 19 C -0.11 -1.53 9.80 71.24 0.70 -0.83 16 20 N -0.50 -12.55 10.40 -180.67 -1.88 -14.43 16 21 C 0.24 6.60 7.92 133.13 1.05 7.66 16 22 C -0.28 -6.61 10.83 22.52 0.24 -6.37 16 23 C 0.11 2.42 7.16 42.73 0.31 2.73 16 24 C -0.07 -0.85 10.43 71.24 0.74 -0.10 16 25 N -0.35 -9.38 12.52 -47.84 -0.60 -9.98 16 26 N -0.32 -8.83 3.90 -180.77 -0.71 -9.53 16 27 C 0.19 4.46 6.86 41.20 0.28 4.75 16 28 C -0.12 -2.53 9.69 71.24 0.69 -1.84 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.13 7.22 -2.39 -0.02 1.12 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 33 H 0.09 1.99 6.44 -2.39 -0.02 1.98 16 34 H 0.04 1.93 7.13 -2.39 -0.02 1.91 16 35 H 0.02 1.04 6.85 -2.39 -0.02 1.03 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.10 2.07 7.40 -2.38 -0.02 2.05 16 38 H 0.12 1.98 7.18 -2.39 -0.02 1.97 16 39 H 0.10 2.07 5.97 -2.38 -0.01 2.05 16 40 H 0.08 1.94 5.91 -2.39 -0.01 1.93 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 1.22 6.01 -2.39 -0.01 1.21 16 44 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 48 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 49 H 0.11 2.10 5.95 -2.39 -0.01 2.09 16 50 H 0.08 1.78 8.13 -2.39 -0.02 1.76 16 Total: -1.00 -81.71 405.02 5.27 -76.44 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.90 Total: 17.12 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 7.45 Total: 4.23 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -4.91 Total: -116.95 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -81.71 5.27 -76.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267412000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.284 kcal (2) G-P(sol) polarization free energy of solvation -81.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds