Wall clock time and date at job start Wed Apr 1 2020 03:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53003 * 109.47015 * 64.99921 * 4 2 1 6 6 O 1.42897 * 109.47285 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 8 8 N 1.46895 * 109.46799 * 294.99463 * 7 2 1 9 9 C 1.46907 * 111.00034 * 179.97438 * 8 7 2 10 10 C 1.50701 * 109.46981 * 180.02562 * 9 8 7 11 11 C 1.35067 * 126.06898 * 259.68453 * 10 9 8 12 12 N 1.35054 * 107.98567 * 179.87735 * 11 10 9 13 13 C 1.46495 * 125.93029 * 180.12012 * 12 11 10 14 14 C 1.50701 * 109.47396 * 125.30242 * 13 12 11 15 15 H 1.08000 * 119.99776 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00261 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00155 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46884 * 89.99426 * 18 16 14 20 20 H 1.48494 * 109.46891 * 209.99536 * 18 16 14 21 21 H 1.48502 * 109.46710 * 329.99552 * 18 16 14 22 22 N 1.40070 * 108.14040 * 0.39191 * 12 11 10 23 23 C 1.31653 * 108.10291 * 359.76025 * 22 12 11 24 24 C 1.48369 * 126.04286 * 179.97438 * 23 22 12 25 25 C 1.39771 * 120.90296 * 144.71691 * 24 23 22 26 26 C 1.37955 * 119.01756 * 179.77705 * 25 24 23 27 27 N 1.31929 * 120.88647 * 0.51275 * 26 25 24 28 28 C 1.31944 * 122.00167 * 359.73950 * 27 26 25 29 29 C 1.37964 * 120.87784 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 34 34 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 35 35 H 1.08994 * 109.47229 * 300.00420 * 5 4 2 36 36 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 37 37 H 0.96702 * 113.99975 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47326 * 54.99931 * 7 2 1 39 39 H 1.09000 * 109.46904 * 175.00284 * 7 2 1 40 40 H 1.00900 * 111.00812 * 303.95845 * 8 7 2 41 41 H 1.08999 * 109.46630 * 300.00316 * 9 8 7 42 42 H 1.09000 * 109.46642 * 60.00341 * 9 8 7 43 43 H 1.08005 * 126.00970 * 0.02991 * 11 10 9 44 44 H 1.09003 * 109.46917 * 245.29969 * 13 12 11 45 45 H 1.08995 * 109.47410 * 5.29689 * 13 12 11 46 46 H 0.96991 * 120.00151 * 180.02562 * 17 16 14 47 47 H 1.08000 * 120.48967 * 0.02817 * 25 24 23 48 48 H 1.08004 * 119.55765 * 180.22979 * 26 25 24 49 49 H 1.07996 * 119.56026 * 180.02562 * 28 27 26 50 50 H 1.07998 * 120.48468 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0688 -2.4953 6 8 2.1121 -0.6045 -3.6620 7 6 2.0400 -0.7213 1.2493 8 7 1.6515 0.0374 2.4456 9 6 2.1248 -0.6271 3.6673 10 6 1.7078 0.1781 4.8709 11 6 2.4916 1.0277 5.5697 12 7 1.7502 1.5527 6.5690 13 6 2.2126 2.5235 7.5639 14 6 1.3027 3.7247 7.5546 15 1 0.4640 3.7615 6.8751 16 6 1.5415 4.7772 8.4126 17 7 2.5631 4.7326 9.2397 18 14 0.4139 6.2665 8.4006 19 1 -0.6950 6.0556 9.3654 20 1 1.1853 7.4744 8.7893 21 1 -0.1447 6.4533 7.0373 22 7 0.4640 1.0032 6.4928 23 6 0.4333 0.1739 5.4708 24 6 -0.7367 -0.6245 5.0292 25 6 -0.9664 -0.8716 3.6729 26 6 -2.0639 -1.6228 3.3060 27 7 -2.8950 -2.0961 4.2147 28 6 -2.7171 -1.8815 5.5044 29 6 -1.6420 -1.1454 5.9580 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1263 -0.7996 -1.2055 34 1 1.6054 -1.7198 -1.2952 35 1 0.5490 0.1471 -2.5390 36 1 2.0698 1.0674 -2.4494 37 1 1.8909 -0.1590 -4.4913 38 1 1.6054 -1.7199 1.2952 39 1 3.1263 -0.7995 1.2056 40 1 1.9882 0.9873 2.3967 41 1 1.6903 -1.6248 3.7297 42 1 3.2117 -0.7051 3.6405 43 1 3.5283 1.2501 5.3640 44 1 2.1989 2.0649 8.5527 45 1 3.2287 2.8354 7.3223 46 1 2.7309 5.4728 9.8436 47 1 -0.2925 -0.4837 2.9234 48 1 -2.2477 -1.8222 2.2606 49 1 -3.4220 -2.2881 6.2144 50 1 -1.5023 -0.9739 7.0151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278572145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:40 Heat of formation + Delta-G solvation = 44.443849 kcal Electronic energy + Delta-G solvation = -29583.342983 eV Core-core repulsion = 25611.453573 eV Total energy + Delta-G solvation = -3971.889409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.77359 -39.47180 -38.25356 -36.78029 -34.69714 -33.78371 -32.85420 -31.02232 -30.91666 -30.15040 -28.67094 -27.49317 -26.21157 -24.23412 -24.19068 -23.10375 -22.45600 -22.00443 -20.43584 -20.02611 -19.36107 -17.69307 -16.79417 -16.65068 -16.04642 -15.85160 -15.75614 -15.47311 -15.22894 -14.94339 -14.80884 -14.39143 -14.13085 -13.95868 -13.70104 -13.53904 -13.28695 -13.10231 -12.92022 -12.59757 -12.40495 -12.29780 -12.07149 -11.92514 -11.76017 -11.66893 -11.26918 -11.10427 -11.02193 -11.00497 -10.90821 -10.76820 -10.33384 -10.22845 -10.07345 -9.99401 -9.46505 -9.28274 -8.89896 -8.71940 -8.49192 -8.35265 -7.75149 -6.33006 -4.38465 1.28741 1.42531 2.59246 3.18475 3.19450 3.25429 3.28429 3.38425 3.77952 4.15204 4.24874 4.42991 4.57985 4.60840 4.66870 4.80197 4.91689 4.97400 5.01948 5.06191 5.11830 5.23088 5.24728 5.34646 5.42310 5.45034 5.49072 5.53307 5.57409 5.60659 5.71808 5.76409 5.81651 5.86296 5.93908 6.02523 6.12787 6.17835 6.22282 6.28544 6.44125 6.62674 6.83820 6.91958 6.96372 6.99419 7.18348 7.26152 7.36858 7.59924 7.76176 7.85081 8.18561 8.41161 8.69923 9.27985 10.75968 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008643 B = 0.002800 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.717775 B = 9999.201746 C =11863.309790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.114 4.114 5 C 0.073 3.927 6 O -0.578 6.578 7 C 0.061 3.939 8 N -0.684 5.684 9 C 0.145 3.855 10 C -0.245 4.245 11 C 0.055 3.945 12 N -0.317 5.317 13 C 0.256 3.744 14 C -0.530 4.530 15 H 0.069 0.931 16 C 0.064 3.936 17 N -0.894 5.894 18 Si 0.908 3.092 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.259 5.259 23 C 0.085 3.915 24 C 0.049 3.951 25 C -0.159 4.159 26 C 0.085 3.915 27 N -0.494 5.494 28 C 0.087 3.913 29 C -0.153 4.153 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.378 0.622 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.345 0.655 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.165 0.835 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.268 0.732 47 H 0.175 0.825 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -11.201 -18.858 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.153 4.153 5 C -0.004 4.004 6 O -0.384 6.384 7 C -0.068 4.068 8 N -0.315 5.315 9 C 0.016 3.984 10 C -0.258 4.258 11 C -0.095 4.095 12 N -0.097 5.097 13 C 0.138 3.862 14 C -0.569 4.569 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.196 1.196 22 N -0.084 5.084 23 C -0.078 4.078 24 C 0.039 3.961 25 C -0.180 4.180 26 C -0.071 4.071 27 N -0.204 5.204 28 C -0.069 4.069 29 C -0.174 4.174 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.225 0.775 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.163 0.837 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.182 0.818 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.192 0.808 48 H 0.167 0.833 49 H 0.169 0.831 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.245 -11.617 -17.368 21.015 hybrid contribution 1.542 1.802 -0.517 2.427 sum -0.703 -9.815 -17.885 20.413 Atomic orbital electron populations 1.21858 0.94283 1.02020 1.02097 1.21061 0.96998 0.99521 0.92973 0.91086 1.21527 1.01625 0.99814 0.92289 1.22277 0.97806 0.94907 0.85416 1.86467 1.81350 1.53969 1.16570 1.22004 0.97544 0.97939 0.89303 1.60439 1.63783 1.06226 1.01088 1.20004 0.96467 0.96275 0.85696 1.19569 0.94004 1.08918 1.03275 1.22254 0.98372 0.96989 0.91879 1.49425 1.06058 1.31252 1.22928 1.19798 0.95932 0.85075 0.85357 1.21213 1.12959 1.00702 1.21976 0.91251 1.24940 0.95575 0.98780 0.94667 1.69912 1.28141 1.32844 1.22349 0.86317 0.80318 0.81099 0.78755 1.20227 1.20931 1.19641 1.77674 1.00026 1.11659 1.19002 1.20284 0.93047 0.98667 0.95811 1.18197 0.91324 0.93445 0.93106 1.23079 0.99348 0.98641 0.96885 1.22594 0.90981 0.94730 0.98819 1.67555 1.29501 1.20922 1.02406 1.22546 0.96036 0.96046 0.92267 1.22286 0.95374 0.98578 1.01163 0.93360 0.90978 0.92712 0.91441 0.91085 0.93224 0.93801 0.77496 0.90817 0.95217 0.83672 0.90838 0.94853 0.81773 0.93548 0.92627 0.92234 0.80798 0.83273 0.83130 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 2 C -0.09 -0.64 2.53 -90.62 -0.23 -0.87 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -0.86 5.05 -26.73 -0.14 -0.99 16 5 C 0.07 0.52 6.80 37.16 0.25 0.77 16 6 O -0.58 -4.62 13.66 -35.23 -0.48 -5.10 16 7 C 0.06 0.50 5.07 -3.82 -0.02 0.48 16 8 N -0.68 -6.96 3.55 -115.05 -0.41 -7.37 16 9 C 0.14 1.72 5.11 -4.97 -0.03 1.69 16 10 C -0.24 -3.90 5.60 -104.76 -0.59 -4.49 16 11 C 0.06 0.96 11.33 -17.26 -0.20 0.76 16 12 N -0.32 -6.84 3.67 -62.59 -0.23 -7.06 16 13 C 0.26 6.20 6.26 -5.20 -0.03 6.17 16 14 C -0.53 -14.32 9.23 -34.44 -0.32 -14.64 16 15 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 18 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 N -0.26 -5.69 12.42 33.42 0.42 -5.28 16 23 C 0.08 1.56 6.78 -82.78 -0.56 1.00 16 24 C 0.05 0.80 5.83 -104.58 -0.61 0.19 16 25 C -0.16 -2.20 8.90 -39.11 -0.35 -2.55 16 26 C 0.09 1.11 11.17 -17.61 -0.20 0.91 16 27 N -0.49 -7.13 10.35 -13.35 -0.14 -7.27 16 28 C 0.09 1.21 11.17 -17.60 -0.20 1.02 16 29 C -0.15 -2.36 9.87 -39.11 -0.39 -2.74 16 30 H 0.05 0.34 6.57 -51.93 -0.34 0.00 16 31 H 0.07 0.66 7.25 -51.93 -0.38 0.29 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.32 6.56 -51.93 -0.34 -0.02 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.38 1.33 9.12 45.56 0.42 1.74 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.34 3.63 8.72 -39.29 -0.34 3.29 16 41 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.17 2.31 8.06 -52.48 -0.42 1.88 16 44 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.32 8.07 -51.93 -0.42 0.90 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.18 2.21 4.38 -52.49 -0.23 1.98 16 48 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 49 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 50 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 412.89 15.07 6.22 6.22 Total: -1.00 -31.20 412.89 -9.34 -40.54 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.08 Total: 5.76 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -3.36 Total: -12.46 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.38 Total: -50.99 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.48 Total: -5.10 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.20 -9.34 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278572145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.983 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds