Wall clock time and date at job start Wed Apr 1 2020 03:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53003 * 109.47015 * 64.99921 * 4 2 1 6 6 O 1.42897 * 109.47285 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 8 8 N 1.46895 * 109.46799 * 294.99463 * 7 2 1 9 9 C 1.46907 * 111.00034 * 179.97438 * 8 7 2 10 10 C 1.50701 * 109.46981 * 180.02562 * 9 8 7 11 11 C 1.35067 * 126.06898 * 259.68453 * 10 9 8 12 12 N 1.35054 * 107.98567 * 179.87735 * 11 10 9 13 13 C 1.46495 * 125.93029 * 180.12012 * 12 11 10 14 14 C 1.50701 * 109.47396 * 125.30242 * 13 12 11 15 15 H 1.08000 * 119.99776 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00261 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00155 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46884 * 89.99426 * 18 16 14 20 20 H 1.48494 * 109.46891 * 209.99536 * 18 16 14 21 21 H 1.48502 * 109.46710 * 329.99552 * 18 16 14 22 22 N 1.40070 * 108.14040 * 0.39191 * 12 11 10 23 23 C 1.31653 * 108.10291 * 359.76025 * 22 12 11 24 24 C 1.48369 * 126.04286 * 179.97438 * 23 22 12 25 25 C 1.39771 * 120.90296 * 144.71691 * 24 23 22 26 26 C 1.37955 * 119.01756 * 179.77705 * 25 24 23 27 27 N 1.31929 * 120.88647 * 0.51275 * 26 25 24 28 28 C 1.31944 * 122.00167 * 359.73950 * 27 26 25 29 29 C 1.37964 * 120.87784 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 34 34 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 35 35 H 1.08994 * 109.47229 * 300.00420 * 5 4 2 36 36 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 37 37 H 0.96702 * 113.99975 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47326 * 54.99931 * 7 2 1 39 39 H 1.09000 * 109.46904 * 175.00284 * 7 2 1 40 40 H 1.00900 * 111.00812 * 303.95845 * 8 7 2 41 41 H 1.08999 * 109.46630 * 300.00316 * 9 8 7 42 42 H 1.09000 * 109.46642 * 60.00341 * 9 8 7 43 43 H 1.08005 * 126.00970 * 0.02991 * 11 10 9 44 44 H 1.09003 * 109.46917 * 245.29969 * 13 12 11 45 45 H 1.08995 * 109.47410 * 5.29689 * 13 12 11 46 46 H 0.96991 * 120.00151 * 180.02562 * 17 16 14 47 47 H 1.08000 * 120.48967 * 0.02817 * 25 24 23 48 48 H 1.08004 * 119.55765 * 180.22979 * 26 25 24 49 49 H 1.07996 * 119.56026 * 180.02562 * 28 27 26 50 50 H 1.07998 * 120.48468 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0688 -2.4953 6 8 2.1121 -0.6045 -3.6620 7 6 2.0400 -0.7213 1.2493 8 7 1.6515 0.0374 2.4456 9 6 2.1248 -0.6271 3.6673 10 6 1.7078 0.1781 4.8709 11 6 2.4916 1.0277 5.5697 12 7 1.7502 1.5527 6.5690 13 6 2.2126 2.5235 7.5639 14 6 1.3027 3.7247 7.5546 15 1 0.4640 3.7615 6.8751 16 6 1.5415 4.7772 8.4126 17 7 2.5631 4.7326 9.2397 18 14 0.4139 6.2665 8.4006 19 1 -0.6950 6.0556 9.3654 20 1 1.1853 7.4744 8.7893 21 1 -0.1447 6.4533 7.0373 22 7 0.4640 1.0032 6.4928 23 6 0.4333 0.1739 5.4708 24 6 -0.7367 -0.6245 5.0292 25 6 -0.9664 -0.8716 3.6729 26 6 -2.0639 -1.6228 3.3060 27 7 -2.8950 -2.0961 4.2147 28 6 -2.7171 -1.8815 5.5044 29 6 -1.6420 -1.1454 5.9580 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1263 -0.7996 -1.2055 34 1 1.6054 -1.7198 -1.2952 35 1 0.5490 0.1471 -2.5390 36 1 2.0698 1.0674 -2.4494 37 1 1.8909 -0.1590 -4.4913 38 1 1.6054 -1.7199 1.2952 39 1 3.1263 -0.7995 1.2056 40 1 1.9882 0.9873 2.3967 41 1 1.6903 -1.6248 3.7297 42 1 3.2117 -0.7051 3.6405 43 1 3.5283 1.2501 5.3640 44 1 2.1989 2.0649 8.5527 45 1 3.2287 2.8354 7.3223 46 1 2.7309 5.4728 9.8436 47 1 -0.2925 -0.4837 2.9234 48 1 -2.2477 -1.8222 2.2606 49 1 -3.4220 -2.2881 6.2144 50 1 -1.5023 -0.9739 7.0151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278572145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:39 Heat of formation + Delta-G solvation = 23.904031 kcal Electronic energy + Delta-G solvation = -29584.233656 eV Core-core repulsion = 25611.453573 eV Total energy + Delta-G solvation = -3972.780083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.17236 -40.63561 -38.88525 -37.46341 -35.99882 -35.08984 -34.35067 -32.46149 -32.07554 -31.36524 -29.57591 -28.88846 -27.15222 -25.81303 -25.17561 -24.22910 -23.61106 -22.99556 -21.45732 -21.14577 -20.56408 -18.68730 -18.29886 -17.99772 -17.18033 -16.94200 -16.75685 -16.48547 -16.34937 -16.00351 -15.91806 -15.65674 -15.31632 -14.87012 -14.69639 -14.65852 -14.51039 -14.23662 -14.12209 -13.89512 -13.63061 -13.35356 -13.25206 -13.07770 -12.80721 -12.73915 -12.57453 -12.43428 -12.36611 -12.23726 -11.79886 -11.71619 -11.67173 -11.46369 -11.35660 -10.96545 -10.75866 -10.74831 -10.40656 -10.00489 -9.86719 -9.32469 -9.11549 -8.37969 -6.51481 0.06700 0.32820 1.17202 1.34442 1.36419 1.46882 1.80996 1.90718 2.31349 2.94296 3.01330 3.20604 3.51052 3.66475 3.69462 3.84518 3.99741 4.02718 4.12577 4.23277 4.26785 4.34453 4.37646 4.38806 4.43891 4.56691 4.61927 4.68396 4.77381 4.83524 4.88166 4.88754 4.90338 4.95965 5.00291 5.06592 5.15349 5.19315 5.20636 5.23548 5.27321 5.50813 5.52968 5.57106 5.66531 5.72078 5.82167 5.89237 6.15030 6.25671 6.53275 6.60034 6.92688 6.94684 7.08915 7.18805 8.70028 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008643 B = 0.002800 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.717775 B = 9999.201746 C =11863.309790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 H 0.070 0.930 4 C -0.111 4.111 5 C 0.072 3.928 6 O -0.599 6.599 7 C 0.066 3.934 8 N -0.686 5.686 9 C 0.153 3.847 10 C -0.231 4.231 11 C 0.051 3.949 12 N -0.345 5.345 13 C 0.272 3.728 14 C -0.546 4.546 15 H 0.050 0.950 16 C 0.020 3.980 17 N -0.919 5.919 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.270 1.270 21 H -0.272 1.272 22 N -0.315 5.315 23 C 0.087 3.913 24 C 0.024 3.976 25 C -0.151 4.151 26 C 0.091 3.909 27 N -0.504 5.504 28 C 0.090 3.910 29 C -0.167 4.167 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.396 0.604 38 H 0.077 0.923 39 H 0.035 0.965 40 H 0.344 0.656 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.196 0.804 44 H 0.019 0.981 45 H 0.058 0.942 46 H 0.273 0.727 47 H 0.187 0.813 48 H 0.184 0.816 49 H 0.177 0.823 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 -11.802 -21.345 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.006 4.006 6 O -0.408 6.408 7 C -0.063 4.063 8 N -0.317 5.317 9 C 0.024 3.976 10 C -0.244 4.244 11 C -0.097 4.097 12 N -0.125 5.125 13 C 0.153 3.847 14 C -0.584 4.584 15 H 0.068 0.932 16 C -0.180 4.180 17 N -0.558 5.558 18 Si 0.793 3.207 19 H -0.201 1.201 20 H -0.195 1.195 21 H -0.197 1.197 22 N -0.140 5.140 23 C -0.076 4.076 24 C 0.014 3.986 25 C -0.172 4.172 26 C -0.065 4.065 27 N -0.214 5.214 28 C -0.065 4.065 29 C -0.189 4.189 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.245 0.755 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.162 0.838 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.213 0.787 44 H 0.037 0.963 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.203 0.797 48 H 0.201 0.799 49 H 0.194 0.806 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.642 -12.231 -19.884 23.493 hybrid contribution 1.628 1.871 0.136 2.483 sum -1.014 -10.360 -19.747 22.323 Atomic orbital electron populations 1.21836 0.94327 1.02195 1.01734 1.20965 0.96829 0.99348 0.92588 0.91162 1.21473 1.01205 0.99688 0.92537 1.22308 0.98292 0.94912 0.85050 1.86416 1.81699 1.54905 1.17754 1.22013 0.97958 0.97801 0.88544 1.60351 1.63917 1.06302 1.01144 1.19967 0.97513 0.95492 0.84660 1.19992 0.92541 1.07982 1.03870 1.22884 0.99657 0.96522 0.90648 1.49105 1.06837 1.32461 1.24139 1.19298 0.95521 0.84733 0.85140 1.21348 1.12960 1.02174 1.21930 0.93213 1.25702 0.96870 1.01281 0.94173 1.69983 1.29247 1.33785 1.22770 0.85396 0.78582 0.78221 0.78546 1.20052 1.19474 1.19683 1.77588 1.00891 1.13912 1.21559 1.20811 0.94686 0.97400 0.94750 1.18383 0.91348 0.94379 0.94512 1.23214 0.99809 0.98336 0.95831 1.23133 0.89919 0.93321 1.00167 1.67663 1.29883 1.21177 1.02642 1.22901 0.95702 0.95189 0.92753 1.22327 0.96189 0.99591 1.00751 0.92672 0.92381 0.92244 0.91987 0.91441 0.92446 0.93280 0.75468 0.90467 0.94649 0.83753 0.90561 0.93067 0.78741 0.96350 0.92426 0.91796 0.79653 0.79904 0.80582 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.84 71.98 0.64 -1.24 16 2 C -0.08 -0.98 2.53 -10.79 -0.03 -1.01 16 3 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.43 5.05 30.60 0.15 -1.27 16 5 C 0.07 0.87 6.80 71.98 0.49 1.36 16 6 O -0.60 -8.47 13.66 -148.98 -2.03 -10.51 16 7 C 0.07 0.91 5.07 86.31 0.44 1.34 16 8 N -0.69 -12.45 3.55 -517.91 -1.84 -14.29 16 9 C 0.15 3.31 5.11 85.56 0.44 3.74 16 10 C -0.23 -7.22 5.60 -19.95 -0.11 -7.34 16 11 C 0.05 1.77 11.33 83.47 0.95 2.71 16 12 N -0.35 -15.44 3.67 -351.92 -1.29 -16.73 16 13 C 0.27 13.80 6.26 85.63 0.54 14.34 16 14 C -0.55 -30.54 9.23 25.60 0.24 -30.31 16 15 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 16 C 0.02 1.12 5.46 84.65 0.46 1.58 16 17 N -0.92 -51.65 13.29 21.45 0.28 -51.37 16 18 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 N -0.32 -14.45 12.42 -48.17 -0.60 -15.05 16 23 C 0.09 3.25 6.78 42.51 0.29 3.54 16 24 C 0.02 0.77 5.83 -19.84 -0.12 0.65 16 25 C -0.15 -3.93 8.90 22.57 0.20 -3.73 16 26 C 0.09 2.13 11.17 84.61 0.95 3.08 16 27 N -0.50 -13.44 10.35 -196.14 -2.03 -15.47 16 28 C 0.09 2.40 11.17 84.61 0.95 3.34 16 29 C -0.17 -5.19 9.87 22.58 0.22 -4.97 16 30 H 0.05 0.64 6.57 -2.39 -0.02 0.62 16 31 H 0.06 0.94 7.25 -2.39 -0.02 0.92 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.59 6.56 -2.39 -0.02 0.58 16 36 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 37 H 0.40 2.06 9.12 -74.06 -0.68 1.39 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.34 6.56 8.72 -89.69 -0.78 5.78 16 41 H 0.08 1.65 7.80 -2.39 -0.02 1.64 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.20 5.24 8.06 -2.91 -0.02 5.21 16 44 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 2.84 8.07 -2.39 -0.02 2.82 16 46 H 0.27 14.36 8.31 -92.71 -0.77 13.58 16 47 H 0.19 4.30 4.38 -2.91 -0.01 4.29 16 48 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 49 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 50 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -68.92 412.89 0.70 -68.22 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.50 Total: 23.76 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 6.68 Total: -14.17 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.47 Total: -112.91 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -2.03 Total: -10.51 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.92 0.70 -68.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278572145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.126 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds