Wall clock time and date at job start Wed Apr 1 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00462 * 2 1 4 4 C 1.53000 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.46866 * 304.99682 * 4 3 2 6 6 C 1.52994 * 109.47032 * 65.00014 * 4 3 2 7 7 C 1.53001 * 109.46551 * 184.99508 * 4 3 2 8 8 N 1.46900 * 109.46827 * 174.99849 * 7 4 3 9 9 C 1.46900 * 111.00316 * 180.02562 * 8 7 4 10 10 C 1.50694 * 109.47300 * 184.74920 * 9 8 7 11 11 C 1.35070 * 126.07593 * 105.37628 * 10 9 8 12 12 N 1.35053 * 107.98399 * 180.15007 * 11 10 9 13 13 C 1.46509 * 125.92745 * 179.87352 * 12 11 10 14 14 C 1.50700 * 109.47084 * 124.70987 * 13 12 11 15 15 H 1.08002 * 120.00589 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99661 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00374 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99961 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46909 * 59.99976 * 18 16 14 20 20 H 1.48500 * 109.47445 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47098 * 300.00342 * 18 16 14 22 22 N 1.40073 * 108.14443 * 359.60280 * 12 11 10 23 23 C 1.31650 * 108.10049 * 0.24823 * 22 12 11 24 24 C 1.48370 * 126.03757 * 180.02562 * 23 22 12 25 25 C 1.39768 * 120.90293 * 137.13899 * 24 23 22 26 26 C 1.37958 * 119.01986 * 179.72594 * 25 24 23 27 27 N 1.31941 * 120.87738 * 0.55412 * 26 25 24 28 28 C 1.31928 * 122.00843 * 359.71621 * 27 26 25 29 29 C 1.37964 * 120.87533 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47545 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47265 * 300.00877 * 1 2 3 32 32 H 1.09004 * 109.46706 * 60.00189 * 1 2 3 33 33 H 1.09000 * 109.47112 * 59.99155 * 3 2 1 34 34 H 1.09003 * 109.46955 * 299.99657 * 3 2 1 35 35 H 1.09000 * 109.47714 * 59.99795 * 6 4 3 36 36 H 1.08999 * 109.47074 * 179.97438 * 6 4 3 37 37 H 1.09001 * 109.47431 * 299.99711 * 6 4 3 38 38 H 1.08995 * 109.47318 * 55.00443 * 7 4 3 39 39 H 1.09002 * 109.47575 * 294.99812 * 7 4 3 40 40 H 1.00903 * 110.99886 * 56.04527 * 8 7 4 41 41 H 1.08998 * 109.47054 * 64.74372 * 9 8 7 42 42 H 1.08995 * 109.46958 * 304.74789 * 9 8 7 43 43 H 1.08000 * 126.00882 * 359.97438 * 11 10 9 44 44 H 1.08991 * 109.46944 * 244.70959 * 13 12 11 45 45 H 1.09001 * 109.46712 * 4.70888 * 13 12 11 46 46 H 0.97001 * 120.00241 * 179.97438 * 17 16 14 47 47 H 1.07997 * 120.48943 * 359.97438 * 25 24 23 48 48 H 1.08003 * 119.56116 * 180.24792 * 26 25 24 49 49 H 1.07994 * 119.56271 * 180.02562 * 28 27 26 50 50 H 1.08004 * 120.48381 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8507 0.5684 0.8427 6 6 3.9963 0.5362 -1.3064 7 6 4.1573 2.5768 0.1262 8 7 5.6161 2.4524 0.2473 9 6 6.2486 3.7725 0.3708 10 6 7.7471 3.6131 0.3753 11 6 8.5813 3.9076 -0.6454 12 7 9.8409 3.6232 -0.2497 13 6 11.0536 3.7928 -1.0541 14 6 12.0338 4.6611 -0.3082 15 1 11.7789 5.0483 0.6672 16 6 13.2557 4.9620 -0.8716 17 7 13.5656 4.4918 -2.0600 18 14 14.4705 6.0389 0.0526 19 1 14.8198 5.3949 1.3443 20 1 15.6997 6.2107 -0.7626 21 1 13.8578 7.3667 0.3113 22 7 9.7873 3.1439 1.0654 23 6 8.5272 3.1358 1.4467 24 6 8.0189 2.7014 2.7712 25 6 7.0316 3.4336 3.4365 26 6 6.5831 2.9912 4.6638 27 7 7.0812 1.9001 5.2137 28 6 8.0175 1.1837 4.6217 29 6 8.5186 1.5523 3.3902 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 1.6888 1.8463 -0.8900 35 1 3.6810 1.1523 -2.1485 36 1 5.0829 0.4505 -1.3061 37 1 3.5532 -0.4556 -1.3959 38 1 3.7604 3.0735 1.0115 39 1 3.9150 3.1642 -0.7594 40 1 6.0009 1.9380 -0.5308 41 1 5.9303 4.2423 1.3014 42 1 5.9523 4.3975 -0.4715 43 1 8.2917 4.2987 -1.6095 44 1 11.5029 2.8181 -1.2439 45 1 10.7975 4.2657 -2.0022 46 1 14.4251 4.7038 -2.4565 47 1 6.6230 4.3303 2.9945 48 1 5.8176 3.5481 5.1838 49 1 8.3968 0.2969 5.1075 50 1 9.2848 0.9608 2.9111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278585428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:34 Heat of formation + Delta-G solvation = 54.720535 kcal Electronic energy + Delta-G solvation = -29369.283413 eV Core-core repulsion = 25397.839634 eV Total energy + Delta-G solvation = -3971.443779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77182 -39.50679 -38.63921 -36.82369 -34.36096 -33.37949 -32.86464 -31.04755 -30.85857 -29.86470 -27.71049 -27.45019 -26.44876 -25.19505 -24.21422 -23.46156 -23.01894 -22.01401 -20.43768 -20.02631 -19.45517 -17.03326 -16.75939 -16.58347 -16.31002 -15.90289 -15.79142 -15.63559 -15.37050 -15.29164 -14.50839 -14.46875 -14.12219 -13.92413 -13.88860 -13.55151 -13.44542 -13.19654 -12.80493 -12.76724 -12.51049 -12.27013 -12.25353 -12.00167 -11.81359 -11.68729 -11.28001 -11.17608 -11.08222 -10.98921 -10.86850 -10.80789 -10.33866 -10.08144 -9.97755 -9.96093 -9.43875 -9.31190 -8.93728 -8.71186 -8.48857 -8.34383 -7.75848 -6.32424 -4.38126 1.31124 1.38489 2.58732 3.12159 3.21225 3.24899 3.28134 3.38201 3.44373 4.12230 4.24973 4.42181 4.62664 4.64042 4.75912 4.77690 4.86210 4.99537 5.01683 5.02607 5.04762 5.14612 5.18248 5.28021 5.30133 5.32518 5.39315 5.42621 5.43122 5.53308 5.58730 5.69581 5.72637 5.81930 5.90996 5.94213 6.10643 6.12340 6.16771 6.17887 6.43148 6.53794 6.81693 6.85449 6.89207 6.92775 7.05503 7.18640 7.43270 7.59795 7.76480 7.84888 8.15807 8.40464 8.69617 9.28253 10.76404 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.002534 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.595049 B =11047.065413 C =12882.134272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.089 4.089 5 H 0.088 0.912 6 C -0.146 4.146 7 C 0.067 3.933 8 N -0.681 5.681 9 C 0.144 3.856 10 C -0.246 4.246 11 C 0.056 3.944 12 N -0.317 5.317 13 C 0.256 3.744 14 C -0.532 4.532 15 H 0.069 0.931 16 C 0.064 3.936 17 N -0.894 5.894 18 Si 0.908 3.092 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.275 1.275 22 N -0.258 5.258 23 C 0.084 3.916 24 C 0.070 3.930 25 C -0.149 4.149 26 C 0.094 3.906 27 N -0.494 5.494 28 C 0.095 3.905 29 C -0.150 4.150 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.342 0.658 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.165 0.835 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.269 0.731 47 H 0.132 0.868 48 H 0.151 0.849 49 H 0.153 0.847 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.859 -4.579 3.353 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.010 4.010 4 C -0.108 4.108 5 H 0.107 0.893 6 C -0.203 4.203 7 C -0.063 4.063 8 N -0.313 5.313 9 C 0.015 3.985 10 C -0.259 4.259 11 C -0.095 4.095 12 N -0.097 5.097 13 C 0.139 3.861 14 C -0.570 4.570 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.735 3.265 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.200 1.200 22 N -0.083 5.083 23 C -0.079 4.079 24 C 0.060 3.940 25 C -0.170 4.170 26 C -0.063 4.063 27 N -0.204 5.204 28 C -0.061 4.061 29 C -0.171 4.171 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.162 0.838 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.183 0.817 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.150 0.850 48 H 0.168 0.832 49 H 0.170 0.830 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.524 -5.342 4.889 22.709 hybrid contribution 0.008 1.670 -1.862 2.501 sum -21.516 -3.672 3.027 22.036 Atomic orbital electron populations 1.22726 0.81227 1.02683 0.99857 1.87884 1.19451 1.28060 1.95376 1.22547 0.93928 0.84534 0.99976 1.21096 0.92167 0.97333 1.00172 0.89343 1.21791 1.01373 1.01108 0.96040 1.21855 0.89056 0.95264 1.00129 1.60520 1.02636 1.18266 1.49917 1.20080 0.88803 0.89285 1.00304 1.19584 0.95180 1.16299 0.94844 1.22266 0.85454 1.01916 0.99826 1.49439 1.07194 1.43746 1.09317 1.19798 0.78298 0.98853 0.89165 1.21177 1.00133 1.31241 1.04463 0.91327 1.24937 0.97896 0.96086 0.95027 1.69900 1.23333 1.44560 1.15402 0.86375 0.79786 0.80561 0.79749 1.19819 1.20972 1.20002 1.77699 1.17446 1.18985 0.94131 1.20259 0.91171 1.02804 0.93640 1.18048 0.93027 0.93004 0.89959 1.22055 0.97870 1.00932 0.96161 1.22513 0.98115 0.93016 0.92622 1.67573 1.10658 1.06511 1.35617 1.22564 0.92921 0.98412 0.92221 1.22218 1.00970 0.97329 0.96607 0.89699 0.94136 0.94223 0.93279 0.93479 0.93243 0.92196 0.91932 0.91059 0.95388 0.83830 0.90758 0.95081 0.81748 0.93469 0.92633 0.92170 0.84980 0.83151 0.83019 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.84 10.24 -35.23 -0.36 -4.20 16 3 C 0.07 0.57 5.32 37.16 0.20 0.77 16 4 C -0.09 -0.83 2.83 -90.62 -0.26 -1.09 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 6 C -0.15 -1.36 8.86 37.15 0.33 -1.03 16 7 C 0.07 0.62 5.14 -3.82 -0.02 0.60 16 8 N -0.68 -7.82 6.52 -115.06 -0.75 -8.57 16 9 C 0.14 1.78 5.71 -4.98 -0.03 1.75 16 10 C -0.25 -3.96 5.56 -104.76 -0.58 -4.55 16 11 C 0.06 0.97 11.32 -17.26 -0.20 0.78 16 12 N -0.32 -6.86 3.67 -62.58 -0.23 -7.09 16 13 C 0.26 6.22 6.26 -5.19 -0.03 6.19 16 14 C -0.53 -14.39 9.23 -34.44 -0.32 -14.71 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -24.75 13.29 55.43 0.74 -24.02 16 18 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 N -0.26 -5.67 12.44 33.42 0.42 -5.26 16 23 C 0.08 1.55 6.72 -82.78 -0.56 0.99 16 24 C 0.07 1.12 5.77 -104.58 -0.60 0.52 16 25 C -0.15 -2.04 9.01 -39.11 -0.35 -2.39 16 26 C 0.09 1.20 11.17 -17.61 -0.20 1.01 16 27 N -0.49 -7.06 10.35 -13.35 -0.14 -7.20 16 28 C 0.10 1.30 11.17 -17.61 -0.20 1.11 16 29 C -0.15 -2.29 9.89 -39.11 -0.39 -2.68 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.58 6.68 -51.93 -0.35 0.23 16 37 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.34 4.05 6.91 -39.29 -0.27 3.78 16 41 H 0.07 0.87 5.81 -51.93 -0.30 0.57 16 42 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.17 2.34 8.06 -52.49 -0.42 1.92 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.32 8.07 -51.93 -0.42 0.90 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 48 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 49 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 50 H 0.13 2.04 8.06 -52.48 -0.42 1.61 16 LS Contribution 417.25 15.07 6.29 6.29 Total: -1.00 -30.62 417.25 -9.20 -39.82 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.96 Total: 3.94 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.18 Total: -9.78 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.03 Total: -52.13 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.36 Total: -4.20 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -30.62 -9.20 -39.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278585428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.544 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds