Wall clock time and date at job start Wed Apr 1 2020 03:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47223 * 120.00011 * 2 1 3 5 5 C 1.53001 * 109.47087 * 184.99928 * 4 2 1 6 6 C 1.53002 * 109.46768 * 180.02562 * 5 4 2 7 7 O 1.42905 * 109.46944 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.46981 * 240.00325 * 2 1 3 9 9 C 1.46899 * 111.00015 * 85.00118 * 8 2 1 10 10 C 1.50693 * 109.46967 * 180.02562 * 9 8 2 11 11 C 1.35077 * 126.07202 * 260.20340 * 10 9 8 12 12 N 1.35051 * 107.98246 * 180.25863 * 11 10 9 13 13 C 1.46504 * 125.92991 * 179.70629 * 12 11 10 14 14 C 1.50692 * 109.47523 * 124.99553 * 13 12 11 15 15 H 1.08002 * 120.00153 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00118 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00444 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00125 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47327 * 90.00148 * 18 16 14 20 20 H 1.48503 * 109.47409 * 209.99972 * 18 16 14 21 21 H 1.48500 * 109.47054 * 330.00060 * 18 16 14 22 22 N 1.40071 * 108.14791 * 359.72236 * 12 11 10 23 23 C 1.31652 * 108.09634 * 0.02562 * 22 12 11 24 24 C 1.48371 * 126.03654 * 180.02562 * 23 22 12 25 25 C 1.39772 * 120.90603 * 325.02046 * 24 23 22 26 26 C 1.37955 * 119.02028 * 179.97438 * 25 24 23 27 27 N 1.31934 * 120.88282 * 359.97438 * 26 25 24 28 28 C 1.31937 * 122.00394 * 0.02562 * 27 26 25 29 29 C 1.37957 * 120.88039 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47283 * 299.99627 * 1 2 3 32 32 H 1.08991 * 109.47121 * 59.99824 * 1 2 3 33 33 H 1.08996 * 109.47310 * 305.00298 * 4 2 1 34 34 H 1.09000 * 109.46768 * 65.00202 * 4 2 1 35 35 H 1.09001 * 109.46806 * 299.99888 * 5 4 2 36 36 H 1.09000 * 109.47093 * 60.00473 * 5 4 2 37 37 H 1.09001 * 109.46715 * 299.99790 * 6 5 4 38 38 H 1.09000 * 109.47293 * 60.00148 * 6 5 4 39 39 H 0.96696 * 113.99909 * 179.97438 * 7 6 5 40 40 H 1.00903 * 110.99538 * 208.95414 * 8 2 1 41 41 H 1.09000 * 109.47221 * 59.99637 * 9 8 2 42 42 H 1.09000 * 109.46635 * 299.99845 * 9 8 2 43 43 H 1.07992 * 126.00997 * 359.97438 * 11 10 9 44 44 H 1.09000 * 109.47371 * 245.00062 * 13 12 11 45 45 H 1.09011 * 109.46700 * 4.99453 * 13 12 11 46 46 H 0.96998 * 120.00565 * 179.97438 * 17 16 14 47 47 H 1.07994 * 120.48685 * 359.95949 * 25 24 23 48 48 H 1.08001 * 119.55962 * 179.97438 * 26 25 24 49 49 H 1.08003 * 119.55935 * 179.97438 * 28 27 26 50 50 H 1.08006 * 120.48952 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0749 -1.3351 2.5626 7 8 5.4990 -1.2338 2.6231 8 7 2.0197 -0.6925 -1.1995 9 6 2.0825 0.2227 -2.3469 10 6 2.5873 -0.5217 -3.5560 11 6 3.8508 -0.4999 -4.0331 12 7 3.8965 -1.2887 -5.1284 13 6 5.0778 -1.5411 -5.9573 14 6 5.3151 -3.0260 -6.0550 15 1 4.6521 -3.7132 -5.5505 16 6 6.3787 -3.5074 -6.7885 17 7 6.5862 -4.8033 -6.8734 18 14 7.5260 -2.3189 -7.6606 19 1 8.6408 -1.9499 -6.7516 20 1 8.0748 -2.9651 -8.8798 21 1 6.7746 -1.0967 -8.0438 22 7 2.6184 -1.8235 -5.3346 23 6 1.8263 -1.3666 -4.3875 24 6 0.3854 -1.6820 -4.2271 25 6 -0.4368 -1.8697 -5.3417 26 6 -1.7710 -2.1621 -5.1475 27 7 -2.2715 -2.2653 -3.9312 28 6 -1.5301 -2.0957 -2.8532 29 6 -0.1864 -1.8007 -2.9572 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -0.2618 2.1370 34 1 1.7517 -1.7715 1.2055 35 1 3.9994 -1.0728 0.4259 36 1 3.8532 0.4370 1.3574 37 1 3.6403 -0.8759 3.4505 38 1 3.7865 -2.3854 2.5185 39 1 5.8920 -1.6697 3.3915 40 1 2.9173 -1.1205 -1.0288 41 1 2.7588 1.0463 -2.1182 42 1 1.0870 0.6164 -2.5525 43 1 4.6778 0.0547 -3.6152 44 1 4.9158 -1.1326 -6.9548 45 1 5.9473 -1.0630 -5.5059 46 1 7.3342 -5.1420 -7.3897 47 1 -0.0337 -1.7868 -6.3401 48 1 -2.4143 -2.3084 -6.0026 49 1 -1.9810 -2.1890 -1.8762 50 1 0.4148 -1.6635 -2.0705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278602599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:06 Heat of formation + Delta-G solvation = 28.642561 kcal Electronic energy + Delta-G solvation = -29954.304017 eV Core-core repulsion = 25981.729413 eV Total energy + Delta-G solvation = -3972.574605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21756 -40.65368 -38.96572 -37.61568 -35.91846 -34.63740 -34.06807 -32.73293 -32.05355 -31.84181 -30.35040 -29.18008 -26.93907 -25.65356 -25.36100 -24.22928 -23.35850 -22.53464 -21.48016 -21.15126 -20.79796 -19.13479 -18.30354 -18.03131 -17.26358 -17.03094 -16.89310 -16.68559 -16.32502 -16.16314 -15.84881 -15.51819 -15.12665 -14.83290 -14.75491 -14.72736 -14.40251 -14.32873 -14.21514 -13.81616 -13.73115 -13.65874 -13.33975 -13.12397 -12.79245 -12.68861 -12.51763 -12.31069 -12.10856 -12.08865 -11.99142 -11.84106 -11.71838 -11.51582 -11.38777 -10.97645 -10.90687 -10.84965 -10.42240 -10.01475 -9.89100 -9.31508 -9.13595 -8.41311 -6.52330 0.04975 0.31791 1.13136 1.32158 1.35197 1.44785 1.76761 1.88687 2.24873 2.90612 3.00443 3.32872 3.39517 3.52626 3.66437 3.78961 3.98049 4.07427 4.10409 4.18634 4.25466 4.26838 4.30958 4.38649 4.42533 4.48333 4.56593 4.63416 4.64898 4.74149 4.78357 4.83321 4.91726 4.93385 4.97070 5.03073 5.10234 5.13035 5.15335 5.22395 5.24623 5.31080 5.41287 5.54333 5.58968 5.73166 5.87629 5.93730 6.23305 6.35428 6.52383 6.53407 6.89111 6.90703 7.07609 7.10793 8.75943 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.006659 B = 0.003759 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4204.022624 B = 7446.935454 C =10769.370700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.049 0.951 4 C -0.110 4.110 5 C -0.125 4.125 6 C 0.073 3.927 7 O -0.602 6.602 8 N -0.689 5.689 9 C 0.153 3.847 10 C -0.233 4.233 11 C 0.053 3.947 12 N -0.345 5.345 13 C 0.238 3.762 14 C -0.548 4.548 15 H 0.024 0.976 16 C 0.016 3.984 17 N -0.941 5.941 18 Si 0.955 3.045 19 H -0.252 1.252 20 H -0.280 1.280 21 H -0.241 1.241 22 N -0.315 5.315 23 C 0.087 3.913 24 C 0.021 3.979 25 C -0.167 4.167 26 C 0.090 3.910 27 N -0.502 5.502 28 C 0.091 3.909 29 C -0.151 4.151 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.396 0.604 40 H 0.342 0.658 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.203 0.797 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.273 0.727 47 H 0.124 0.876 48 H 0.178 0.822 49 H 0.185 0.815 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 14.241 19.011 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.067 0.933 4 C -0.148 4.148 5 C -0.162 4.162 6 C -0.004 4.004 7 O -0.410 6.410 8 N -0.323 5.323 9 C 0.023 3.977 10 C -0.245 4.245 11 C -0.095 4.095 12 N -0.125 5.125 13 C 0.118 3.882 14 C -0.586 4.586 15 H 0.042 0.958 16 C -0.183 4.183 17 N -0.580 5.580 18 Si 0.776 3.224 19 H -0.176 1.176 20 H -0.206 1.206 21 H -0.164 1.164 22 N -0.139 5.139 23 C -0.076 4.076 24 C 0.011 3.989 25 C -0.188 4.188 26 C -0.066 4.066 27 N -0.212 5.212 28 C -0.065 4.065 29 C -0.172 4.172 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.245 0.755 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.219 0.781 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.142 0.858 48 H 0.195 0.805 49 H 0.202 0.798 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.710 13.238 17.175 24.644 hybrid contribution 2.645 0.359 0.235 2.680 sum -9.064 13.597 17.410 23.878 Atomic orbital electron populations 1.21866 0.93738 1.02581 1.01806 1.21587 0.96327 0.96027 0.88538 0.93307 1.21633 0.93182 1.01970 0.97986 1.21580 0.96352 1.00840 0.97472 1.22275 0.80351 0.99552 0.98273 1.86450 1.21557 1.80838 1.52197 1.60520 1.33968 1.33221 1.04543 1.20034 1.00216 0.91745 0.85685 1.20056 0.92265 1.08913 1.03275 1.22942 0.99815 0.96910 0.89823 1.48776 1.07830 1.33677 1.22183 1.19857 0.80806 0.96437 0.91063 1.21187 1.13022 0.90932 1.33433 0.95798 1.25920 0.98945 0.97295 0.96157 1.70053 1.31231 1.14915 1.41781 0.85619 0.79050 0.79162 0.78559 1.17609 1.20554 1.16381 1.77641 0.90371 1.21474 1.24437 1.20842 0.93593 0.98309 0.94884 1.18407 0.88626 0.97042 0.94830 1.22325 0.95675 1.01417 0.99394 1.22903 0.92534 0.95516 0.95628 1.67661 1.40341 1.13747 0.99479 1.23137 0.90406 0.94858 0.98123 1.23245 0.97262 0.98016 0.98694 0.91862 0.91034 0.93236 0.89248 0.90958 0.92872 0.91783 0.91972 0.93243 0.75478 0.83786 0.93030 0.90413 0.78056 0.93861 0.90279 0.91827 0.85797 0.80523 0.79803 0.79675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.74 71.98 0.63 -1.12 16 2 C 0.08 1.17 2.65 44.91 0.12 1.29 16 3 H 0.05 0.67 7.80 -2.38 -0.02 0.65 16 4 C -0.11 -1.31 4.81 30.60 0.15 -1.16 16 5 C -0.12 -1.91 5.41 30.60 0.17 -1.74 16 6 C 0.07 1.03 7.05 71.98 0.51 1.54 16 7 O -0.60 -10.78 13.66 -148.98 -2.04 -12.81 16 8 N -0.69 -13.45 4.00 -495.57 -1.98 -15.44 16 9 C 0.15 3.38 4.91 85.55 0.42 3.80 16 10 C -0.23 -7.35 5.60 -19.95 -0.11 -7.46 16 11 C 0.05 1.78 11.33 83.47 0.95 2.73 16 12 N -0.34 -15.07 3.67 -351.91 -1.29 -16.36 16 13 C 0.24 11.01 5.33 85.63 0.46 11.47 16 14 C -0.55 -31.88 9.79 25.60 0.25 -31.63 16 15 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 16 C 0.02 0.90 5.47 84.65 0.46 1.37 16 17 N -0.94 -58.52 13.96 21.45 0.30 -58.22 16 18 Si 0.96 40.91 27.47 68.60 1.88 42.79 16 19 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 22 N -0.32 -14.75 12.42 -48.17 -0.60 -15.35 16 23 C 0.09 3.35 6.78 42.51 0.29 3.64 16 24 C 0.02 0.70 5.83 -19.84 -0.12 0.59 16 25 C -0.17 -5.33 9.87 22.57 0.22 -5.11 16 26 C 0.09 2.46 11.17 84.61 0.95 3.40 16 27 N -0.50 -13.74 10.35 -196.14 -2.03 -15.77 16 28 C 0.09 2.20 11.17 84.61 0.95 3.15 16 29 C -0.15 -4.10 8.90 22.58 0.20 -3.90 16 30 H 0.06 0.80 7.92 -2.39 -0.02 0.78 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.70 7.45 -2.39 -0.02 0.68 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.03 6.43 -2.39 -0.02 1.01 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.40 3.45 9.12 -74.06 -0.68 2.78 16 40 H 0.34 7.41 6.46 -89.69 -0.58 6.83 16 41 H 0.05 0.97 8.05 -2.39 -0.02 0.96 16 42 H 0.08 1.71 7.10 -2.39 -0.02 1.69 16 43 H 0.20 5.02 8.06 -2.91 -0.02 4.99 16 44 H 0.04 1.98 7.20 -2.39 -0.02 1.96 16 45 H 0.08 3.14 7.49 -2.38 -0.02 3.12 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 47 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 48 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 49 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 50 H 0.19 4.55 3.95 -2.91 -0.01 4.53 16 Total: -1.00 -78.08 407.49 0.38 -77.71 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -0.35 Total: 32.61 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 6.48 Total: -19.17 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -5.60 Total: -121.13 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -2.04 Total: -12.81 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.79 kcal Total: -78.08 0.38 -77.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278602599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.351 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds