Wall clock time and date at job start Wed Apr 1 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00473 * 2 1 4 4 H 1.08998 * 109.47239 * 29.99264 * 3 2 1 5 5 C 1.53007 * 109.46994 * 269.99871 * 3 2 1 6 6 C 1.52994 * 109.47336 * 149.99781 * 3 2 1 7 7 C 1.52992 * 109.47256 * 294.99914 * 6 3 2 8 8 N 1.46903 * 109.47326 * 180.02562 * 7 6 3 9 9 C 1.46904 * 111.00094 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47192 * 179.97438 * 9 8 7 11 11 C 1.35075 * 126.07452 * 259.97619 * 10 9 8 12 12 N 1.35049 * 107.98454 * 180.02562 * 11 10 9 13 13 C 1.46498 * 125.92885 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47338 * 124.97704 * 13 12 11 15 15 H 1.08004 * 119.99947 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00049 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99962 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47321 * 89.99553 * 18 16 14 20 20 H 1.48501 * 109.46951 * 209.99691 * 18 16 14 21 21 H 1.48502 * 109.46918 * 329.99583 * 18 16 14 22 22 N 1.40070 * 108.14575 * 0.02562 * 12 11 10 23 23 C 1.31654 * 108.10234 * 359.97438 * 22 12 11 24 24 C 1.48364 * 126.04172 * 179.73340 * 23 22 12 25 25 C 1.39776 * 120.90067 * 144.74639 * 24 23 22 26 26 C 1.37959 * 119.01839 * 179.75318 * 25 24 23 27 27 N 1.31941 * 120.88385 * 0.54153 * 26 25 24 28 28 C 1.31938 * 121.99958 * 359.72921 * 27 26 25 29 29 C 1.37960 * 120.88192 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47426 * 300.00193 * 1 2 3 31 31 H 1.09004 * 109.46782 * 60.00422 * 1 2 3 32 32 H 1.08996 * 109.47276 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46882 * 180.02562 * 5 3 2 34 34 H 1.08998 * 109.46632 * 299.99765 * 5 3 2 35 35 H 1.08997 * 109.46875 * 59.99727 * 5 3 2 36 36 H 1.09002 * 109.47382 * 174.99999 * 6 3 2 37 37 H 1.08998 * 109.47326 * 55.00268 * 6 3 2 38 38 H 1.09005 * 109.47521 * 60.00085 * 7 6 3 39 39 H 1.08999 * 109.47391 * 299.99633 * 7 6 3 40 40 H 1.00904 * 111.00204 * 303.95239 * 8 7 6 41 41 H 1.09004 * 109.47201 * 59.99980 * 9 8 7 42 42 H 1.09001 * 109.46800 * 299.99830 * 9 8 7 43 43 H 1.07999 * 126.00285 * 0.04294 * 11 10 9 44 44 H 1.09004 * 109.47318 * 244.97382 * 13 12 11 45 45 H 1.08999 * 109.47189 * 4.97288 * 13 12 11 46 46 H 0.96999 * 119.99930 * 180.02562 * 17 16 14 47 47 H 1.07995 * 120.48914 * 0.02562 * 25 24 23 48 48 H 1.08001 * 119.55816 * 180.26769 * 26 25 24 49 49 H 1.08001 * 119.55989 * 180.02562 * 28 27 26 50 50 H 1.07999 * 120.48932 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3589 1.2631 0.7213 7 6 3.1382 0.9184 2.1954 8 7 4.4331 0.8784 2.8881 9 6 4.2600 0.5489 4.3092 10 6 5.6065 0.5165 4.9850 11 6 6.3245 -0.5902 5.2751 12 7 7.4685 -0.1993 5.8769 13 6 8.5336 -1.0838 6.3557 14 6 9.8447 -0.6719 5.7373 15 1 9.8809 0.1648 5.0554 16 6 10.9979 -1.3639 6.0412 17 7 10.9538 -2.3831 6.8712 18 14 12.6232 -0.8529 5.2752 19 1 13.2891 0.1471 6.1479 20 1 13.4981 -2.0440 5.1300 21 1 12.3742 -0.2557 3.9385 22 7 7.4600 1.1987 5.9638 23 6 6.3397 1.6351 5.4273 24 6 5.9205 3.0538 5.3147 25 6 5.2004 3.5035 4.2043 26 6 4.8258 4.8298 4.1420 27 7 5.1476 5.6705 5.1066 28 6 5.8309 5.2879 6.1684 29 6 6.2397 3.9782 6.3133 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 2.6616 2.7668 -1.4426 34 1 2.8830 1.0772 -1.9563 35 1 1.2570 1.8013 -1.9564 36 1 3.8427 2.2368 0.6443 37 1 3.9931 0.5050 0.2618 38 1 2.6544 -0.0554 2.2725 39 1 2.5041 1.6765 2.6549 40 1 5.0626 0.2290 2.4408 41 1 3.7845 -0.4277 4.4005 42 1 3.6331 1.3040 4.7835 43 1 6.0346 -1.6087 5.0628 44 1 8.6054 -1.0117 7.4410 45 1 8.3062 -2.1119 6.0742 46 1 11.7651 -2.8697 7.0853 47 1 4.9373 2.8218 3.4091 48 1 4.2655 5.1857 3.2900 49 1 6.0726 6.0093 6.9349 50 1 6.7983 3.6718 7.1853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278733564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:37 Heat of formation + Delta-G solvation = 36.760961 kcal Electronic energy + Delta-G solvation = -29415.039651 eV Core-core repulsion = 25442.817087 eV Total energy + Delta-G solvation = -3972.222565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.17721 -40.63209 -39.42033 -37.36326 -35.82495 -34.50643 -33.86622 -32.45723 -32.07077 -31.48120 -29.66236 -28.59895 -27.42988 -25.86672 -25.50088 -24.22581 -23.62482 -23.08521 -21.92620 -21.43242 -20.76024 -18.69132 -18.10345 -17.75130 -17.19869 -16.93211 -16.78002 -16.43659 -16.32326 -16.10774 -15.84619 -15.73058 -15.21562 -14.90320 -14.85666 -14.61136 -14.43435 -14.21244 -14.11480 -13.86133 -13.62777 -13.59176 -13.32253 -13.23738 -13.01178 -12.79318 -12.60765 -12.46544 -12.29235 -12.21193 -12.08427 -11.89221 -11.79268 -11.53078 -11.42081 -10.97005 -10.75841 -10.47720 -10.40719 -10.00280 -9.87273 -9.35065 -9.13595 -8.38041 -6.51625 0.06597 0.33092 1.16030 1.34588 1.36321 1.47027 1.80484 1.90000 2.31425 2.94163 2.95722 3.02078 3.36421 3.53908 3.68240 3.81849 3.98468 4.12650 4.15467 4.23198 4.26942 4.31541 4.37522 4.42679 4.45866 4.54842 4.56278 4.62673 4.69168 4.77125 4.82868 4.85828 4.86248 4.88330 4.92694 4.99572 5.05784 5.08029 5.17216 5.18592 5.22690 5.31610 5.40833 5.51201 5.58200 5.71537 5.81853 5.88885 6.13920 6.24585 6.38342 6.49882 6.59656 6.93712 7.09082 7.18648 8.70017 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008472 B = 0.002775 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.228150 B =10088.540179 C =12091.593596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.084 3.916 4 H 0.073 0.927 5 C -0.173 4.173 6 C -0.112 4.112 7 C 0.065 3.935 8 N -0.688 5.688 9 C 0.154 3.846 10 C -0.233 4.233 11 C 0.051 3.949 12 N -0.345 5.345 13 C 0.272 3.728 14 C -0.547 4.547 15 H 0.050 0.950 16 C 0.021 3.979 17 N -0.919 5.919 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.270 1.270 21 H -0.273 1.273 22 N -0.315 5.315 23 C 0.087 3.913 24 C 0.023 3.977 25 C -0.150 4.150 26 C 0.092 3.908 27 N -0.504 5.504 28 C 0.091 3.909 29 C -0.167 4.167 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.343 0.657 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.195 0.805 44 H 0.019 0.981 45 H 0.057 0.943 46 H 0.273 0.727 47 H 0.183 0.817 48 H 0.187 0.813 49 H 0.178 0.822 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.978 8.120 -12.558 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.027 3.973 4 H 0.091 0.909 5 C -0.230 4.230 6 C -0.149 4.149 7 C -0.063 4.063 8 N -0.319 5.319 9 C 0.024 3.976 10 C -0.245 4.245 11 C -0.097 4.097 12 N -0.125 5.125 13 C 0.153 3.847 14 C -0.585 4.585 15 H 0.068 0.932 16 C -0.180 4.180 17 N -0.558 5.558 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.194 1.194 21 H -0.197 1.197 22 N -0.139 5.139 23 C -0.076 4.076 24 C 0.013 3.987 25 C -0.171 4.171 26 C -0.064 4.064 27 N -0.213 5.213 28 C -0.065 4.065 29 C -0.188 4.188 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.161 0.839 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.212 0.788 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.200 0.800 48 H 0.204 0.796 49 H 0.195 0.805 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.770 9.526 -11.775 25.706 hybrid contribution 0.556 -2.189 -0.145 2.263 sum -20.214 7.337 -11.920 24.587 Atomic orbital electron populations 1.22893 0.80243 1.03280 1.00605 1.87911 1.20772 1.28963 1.95222 1.22209 0.94801 0.84351 0.95985 0.90860 1.22261 1.02325 1.02131 0.96296 1.21661 0.95956 1.03341 0.93974 1.21906 0.90346 1.00361 0.93716 1.60437 1.12939 1.56424 1.02078 1.19959 0.90201 0.99949 0.87471 1.20001 1.01609 0.89854 1.13062 1.22872 0.87258 1.01380 0.98213 1.49110 1.15821 1.04093 1.43514 1.19304 0.83411 0.87422 0.94563 1.21353 0.92887 1.15882 1.28373 0.93218 1.25704 1.02574 0.94495 0.95241 1.69982 1.30470 1.20442 1.34889 0.85391 0.78444 0.78161 0.78720 1.19976 1.19446 1.19725 1.77582 1.21031 0.90709 1.24554 1.20822 0.92888 0.93900 1.00007 1.18382 0.96171 0.88746 0.95351 1.23148 0.96843 0.98528 0.98595 1.23174 0.96860 0.89185 0.97228 1.67673 1.12346 1.39042 1.02278 1.22903 0.93907 0.93790 0.95887 1.22320 1.01321 0.95021 1.00141 0.93271 0.93383 0.89368 0.90309 0.92811 0.92163 0.88898 0.92236 0.95165 0.90399 0.83928 0.93374 0.90363 0.78843 0.96264 0.92473 0.91777 0.80022 0.79581 0.80538 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 113.37 1.23 1.51 16 2 O -0.41 -6.83 9.88 -148.98 -1.47 -8.30 16 3 C 0.08 1.10 2.72 30.59 0.08 1.18 16 4 H 0.07 0.77 7.79 -2.39 -0.02 0.75 16 5 C -0.17 -1.99 9.53 71.98 0.69 -1.30 16 6 C -0.11 -1.59 5.18 30.59 0.16 -1.44 16 7 C 0.07 1.03 5.58 86.30 0.48 1.51 16 8 N -0.69 -13.73 4.12 -517.92 -2.13 -15.87 16 9 C 0.15 3.53 5.11 85.56 0.44 3.97 16 10 C -0.23 -7.52 5.60 -19.95 -0.11 -7.63 16 11 C 0.05 1.82 11.33 83.47 0.95 2.77 16 12 N -0.35 -15.72 3.67 -351.92 -1.29 -17.01 16 13 C 0.27 13.97 6.26 85.63 0.54 14.51 16 14 C -0.55 -30.91 9.23 25.60 0.24 -30.67 16 15 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 16 C 0.02 1.13 5.46 84.66 0.46 1.60 16 17 N -0.92 -52.05 13.29 21.45 0.28 -51.76 16 18 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 N -0.31 -14.61 12.42 -48.17 -0.60 -15.21 16 23 C 0.09 3.32 6.78 42.51 0.29 3.61 16 24 C 0.02 0.77 5.83 -19.84 -0.12 0.65 16 25 C -0.15 -3.93 8.89 22.58 0.20 -3.73 16 26 C 0.09 2.12 11.17 84.61 0.95 3.07 16 27 N -0.50 -13.29 10.35 -196.13 -2.03 -15.32 16 28 C 0.09 2.40 11.17 84.61 0.95 3.34 16 29 C -0.17 -5.18 9.87 22.57 0.22 -4.96 16 30 H 0.05 0.45 8.09 -2.39 -0.02 0.43 16 31 H 0.05 0.43 7.87 -2.38 -0.02 0.41 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.62 7.87 -2.39 -0.02 0.60 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.03 0.53 7.82 -2.38 -0.02 0.51 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.34 7.37 8.72 -89.69 -0.78 6.58 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 43 H 0.19 5.47 8.06 -2.91 -0.02 5.45 16 44 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 45 H 0.06 2.86 8.07 -2.39 -0.02 2.84 16 46 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 47 H 0.18 4.32 4.91 -2.91 -0.01 4.31 16 48 H 0.19 2.87 8.06 -2.91 -0.02 2.84 16 49 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 50 H 0.12 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -67.95 417.54 2.56 -65.38 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.15 Total: 24.12 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 7.63 Total: -12.02 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -5.77 Total: -115.17 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -1.47 Total: -8.30 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.95 2.56 -65.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278733564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.144 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds