Wall clock time and date at job start Wed Apr 1 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47296 * 2 1 4 4 O 1.42893 * 109.47233 * 120.00425 * 2 1 3 5 5 C 1.53004 * 109.47323 * 240.00631 * 2 1 3 6 6 C 1.52996 * 109.47182 * 175.00377 * 5 2 1 7 7 N 1.46897 * 109.47209 * 179.97438 * 6 5 2 8 8 C 1.46904 * 111.00138 * 66.03889 * 7 6 5 9 9 C 1.46900 * 111.00443 * 189.99811 * 7 6 5 10 10 C 1.50698 * 109.47260 * 164.18609 * 9 7 6 11 11 C 1.35069 * 126.07091 * 105.28779 * 10 9 7 12 12 N 1.35055 * 107.98472 * 179.87024 * 11 10 9 13 13 C 1.46500 * 125.93404 * 180.11431 * 12 11 10 14 14 C 1.50700 * 109.47066 * 125.30101 * 13 12 11 15 15 H 1.07999 * 120.00068 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99787 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99856 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00204 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46927 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47109 * 119.99867 * 18 16 14 21 21 H 1.48496 * 109.47322 * 239.99922 * 18 16 14 22 22 N 1.40076 * 108.14032 * 0.39001 * 12 11 10 23 23 C 1.31650 * 108.09925 * 359.75879 * 22 12 11 24 24 C 1.48371 * 126.03838 * 179.97438 * 23 22 12 25 25 C 1.39769 * 120.90499 * 136.22459 * 24 23 22 26 26 C 1.37969 * 119.01807 * 179.77553 * 25 24 23 27 27 N 1.31925 * 120.88226 * 0.51482 * 26 25 24 28 28 C 1.31941 * 122.00537 * 359.73243 * 27 26 25 29 29 C 1.37954 * 120.88050 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.46827 * 59.99727 * 1 2 3 31 31 H 1.08995 * 109.47405 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47195 * 300.00111 * 1 2 3 33 33 H 0.96702 * 114.00444 * 299.99908 * 4 2 1 34 34 H 1.09005 * 109.46835 * 294.99885 * 5 2 1 35 35 H 1.09002 * 109.47091 * 54.99875 * 5 2 1 36 36 H 1.09005 * 109.46835 * 299.99509 * 6 5 2 37 37 H 1.08996 * 109.47559 * 59.99288 * 6 5 2 38 38 H 1.09005 * 109.46513 * 54.00794 * 8 7 6 39 39 H 1.09001 * 109.46907 * 173.99863 * 8 7 6 40 40 H 1.08988 * 109.47316 * 294.00391 * 8 7 6 41 41 H 1.08998 * 109.47021 * 284.18862 * 9 7 6 42 42 H 1.09003 * 109.46664 * 44.18348 * 9 7 6 43 43 H 1.07996 * 126.00949 * 0.02670 * 11 10 9 44 44 H 1.08994 * 109.47367 * 245.30430 * 13 12 11 45 45 H 1.09006 * 109.46587 * 5.30047 * 13 12 11 46 46 H 0.97007 * 120.00075 * 179.97438 * 17 16 14 47 47 H 1.07996 * 120.49163 * 0.02562 * 25 24 23 48 48 H 1.08004 * 119.55044 * 180.22713 * 26 25 24 49 49 H 1.07994 * 119.55881 * 180.02562 * 28 27 26 50 50 H 1.07997 * 120.49071 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7211 -1.2493 6 6 3.5648 -0.6132 -1.3137 7 7 4.0546 -1.3061 -2.5128 8 6 3.6041 -0.6261 -3.7346 9 6 5.5181 -1.4301 -2.4885 10 6 5.9521 -2.4584 -3.5009 11 6 6.5320 -2.2044 -4.6941 12 7 6.7696 -3.3866 -5.3024 13 6 7.3906 -3.5676 -6.6168 14 6 8.5747 -4.4912 -6.4900 15 1 8.8385 -4.9019 -5.5266 16 6 9.3219 -4.8110 -7.6038 17 7 9.0009 -4.3105 -8.7768 18 14 10.7900 -5.9553 -7.4466 19 1 10.9387 -6.3781 -6.0308 20 1 10.5793 -7.1512 -8.3014 21 1 12.0195 -5.2457 -7.8824 22 7 6.3133 -4.4094 -4.4611 23 6 5.8196 -3.8550 -3.3738 24 6 5.2277 -4.5742 -2.2189 25 6 5.5381 -4.2044 -0.9073 26 6 4.9617 -4.8970 0.1375 27 7 4.1367 -5.9012 -0.0890 28 6 3.8216 -6.2851 -1.3114 29 6 4.3492 -5.6440 -2.4131 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7210 -0.2703 1.9979 34 1 1.7517 -1.7714 -1.2057 35 1 1.6054 -0.2615 -2.1370 36 1 3.8532 0.4371 -1.3573 37 1 3.9994 -1.0727 -0.4260 38 1 3.8919 0.4244 -3.6929 39 1 4.0667 -1.0952 -4.6030 40 1 2.5199 -0.7030 -3.8145 41 1 5.9684 -0.4678 -2.7320 42 1 5.8399 -1.7405 -1.4943 43 1 6.7669 -1.2278 -5.0907 44 1 6.6647 -4.0000 -7.3053 45 1 7.7223 -2.6017 -6.9980 46 1 9.5268 -4.5352 -9.5604 47 1 6.2160 -3.3861 -0.7145 48 1 5.1927 -4.6161 1.1545 49 1 3.1415 -7.1123 -1.4513 50 1 4.0866 -5.9633 -3.4108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279412456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:56 Heat of formation + Delta-G solvation = 56.686770 kcal Electronic energy + Delta-G solvation = -30084.308897 eV Core-core repulsion = 26112.950380 eV Total energy + Delta-G solvation = -3971.358517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.74506 -39.45960 -38.40728 -36.95787 -34.11470 -32.86301 -32.65862 -31.11430 -30.91056 -30.27771 -28.83654 -27.70695 -26.45648 -24.42166 -24.15434 -23.12157 -22.27221 -21.52049 -20.78942 -20.01952 -19.30950 -17.72198 -16.71734 -16.57037 -15.94855 -15.70655 -15.61224 -15.36485 -15.23947 -14.90213 -14.54029 -14.35385 -14.11525 -13.71861 -13.56250 -13.46265 -13.29757 -13.12386 -12.84380 -12.58738 -12.40514 -12.26560 -12.22868 -11.84155 -11.80677 -11.62632 -11.48359 -11.21403 -11.03860 -10.97952 -10.86939 -10.67029 -10.31092 -10.24083 -10.04042 -9.90438 -9.38342 -9.25821 -8.88975 -8.70068 -8.41395 -8.19254 -7.67624 -6.30683 -4.35845 1.36577 1.43286 2.64436 3.18518 3.19346 3.27224 3.32538 3.43827 3.98826 4.09787 4.19250 4.27313 4.64993 4.67432 4.72256 4.82247 4.88222 5.05090 5.07609 5.10680 5.20806 5.23790 5.32220 5.37568 5.43370 5.43965 5.44811 5.52362 5.60516 5.66579 5.70172 5.76344 5.80735 5.94441 5.99631 6.00958 6.07343 6.13801 6.19071 6.22546 6.48078 6.58145 6.85870 6.93686 6.96353 7.15549 7.19106 7.27342 7.40481 7.63159 7.79181 7.89770 8.20658 8.46146 8.73027 9.30518 10.78288 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.002778 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.762235 B =10077.700566 C =11535.881207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.102 3.898 3 H 0.051 0.949 4 O -0.563 6.563 5 C -0.109 4.109 6 C 0.061 3.939 7 N -0.534 5.534 8 C 0.026 3.974 9 C 0.139 3.861 10 C -0.233 4.233 11 C 0.053 3.947 12 N -0.318 5.318 13 C 0.256 3.744 14 C -0.529 4.529 15 H 0.070 0.930 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.281 1.281 22 N -0.259 5.259 23 C 0.084 3.916 24 C 0.072 3.928 25 C -0.152 4.152 26 C 0.097 3.903 27 N -0.494 5.494 28 C 0.095 3.905 29 C -0.151 4.151 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.374 0.626 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.080 0.920 38 H 0.020 0.980 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.163 0.837 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.267 0.733 47 H 0.131 0.869 48 H 0.151 0.849 49 H 0.152 0.848 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.057 10.500 16.332 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.069 0.931 4 O -0.368 6.368 5 C -0.146 4.146 6 C -0.067 4.067 7 N -0.258 5.258 8 C -0.123 4.123 9 C 0.011 3.989 10 C -0.246 4.246 11 C -0.097 4.097 12 N -0.098 5.098 13 C 0.139 3.861 14 C -0.567 4.567 15 H 0.088 0.912 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.207 1.207 22 N -0.084 5.084 23 C -0.079 4.079 24 C 0.062 3.938 25 C -0.173 4.173 26 C -0.060 4.060 27 N -0.204 5.204 28 C -0.061 4.061 29 C -0.172 4.172 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.039 0.961 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.181 0.819 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.149 0.851 48 H 0.169 0.831 49 H 0.169 0.831 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.946 8.085 15.558 22.403 hybrid contribution 1.076 1.993 -0.303 2.285 sum -12.871 10.078 15.255 22.359 Atomic orbital electron populations 1.22506 0.96625 1.02968 1.02216 1.21796 0.92554 0.95066 0.86345 0.93106 1.86598 1.76906 1.57551 1.15748 1.21603 0.95740 1.02202 0.95082 1.22058 0.95073 0.95905 0.93643 1.61941 1.11117 1.51018 1.01690 1.22373 1.00748 0.95656 0.93491 1.20248 0.86229 0.94973 0.97407 1.19528 1.13691 0.93087 0.98331 1.22221 1.01231 0.92193 0.94098 1.49400 1.41939 1.02099 1.16396 1.19784 0.93388 0.99291 0.73659 1.21263 1.11108 1.28742 0.95623 0.91212 1.24940 0.98098 0.96202 0.94767 1.69923 1.40085 1.44103 0.99157 0.86273 0.81462 0.80267 0.78552 1.19485 1.20596 1.20732 1.77687 1.16389 1.13251 1.01032 1.20232 1.01877 0.91789 0.93988 1.18051 0.92834 0.92280 0.90670 1.22051 1.01531 1.01441 0.92255 1.22505 0.92958 0.91532 0.98964 1.67572 1.13870 1.14365 1.24546 1.22551 0.97692 0.98439 0.87454 1.22196 0.97952 0.96211 1.00838 0.91679 0.91638 0.92530 0.77988 0.90326 0.90845 0.95634 0.90185 0.96138 0.91087 0.91914 0.94631 0.90628 0.81923 0.93560 0.92689 0.92317 0.85081 0.83147 0.83102 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 9.53 37.16 0.35 -0.86 16 2 C 0.10 0.80 3.58 -26.73 -0.10 0.70 16 3 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 4 O -0.56 -4.95 12.85 -35.23 -0.45 -5.40 16 5 C -0.11 -1.05 4.84 -26.73 -0.13 -1.18 16 6 C 0.06 0.66 4.85 -3.83 -0.02 0.64 16 7 N -0.53 -6.73 4.71 -244.37 -1.15 -7.88 16 8 C 0.03 0.30 9.09 60.07 0.55 0.85 16 9 C 0.14 1.86 4.99 -4.98 -0.02 1.83 16 10 C -0.23 -3.92 4.81 -104.76 -0.50 -4.43 16 11 C 0.05 0.95 10.79 -17.26 -0.19 0.76 16 12 N -0.32 -7.02 3.67 -62.58 -0.23 -7.25 16 13 C 0.26 6.30 6.26 -5.19 -0.03 6.27 16 14 C -0.53 -14.46 9.23 -34.44 -0.32 -14.78 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 18 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 N -0.26 -5.81 12.44 33.42 0.42 -5.40 16 23 C 0.08 1.60 6.72 -82.78 -0.56 1.04 16 24 C 0.07 1.20 5.76 -104.58 -0.60 0.59 16 25 C -0.15 -2.17 9.01 -39.11 -0.35 -2.52 16 26 C 0.10 1.31 11.17 -17.61 -0.20 1.11 16 27 N -0.49 -7.30 10.35 -13.35 -0.14 -7.44 16 28 C 0.09 1.34 11.17 -17.61 -0.20 1.14 16 29 C -0.15 -2.37 9.89 -39.11 -0.39 -2.76 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.37 1.71 9.08 45.56 0.41 2.12 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.65 6.69 -51.93 -0.35 0.30 16 36 H 0.03 0.26 8.06 -51.93 -0.42 -0.16 16 37 H 0.08 0.93 7.54 -51.93 -0.39 0.54 16 38 H 0.02 0.21 8.06 -51.93 -0.42 -0.21 16 39 H 0.07 0.96 6.84 -51.93 -0.36 0.60 16 40 H 0.06 0.68 6.77 -51.94 -0.35 0.33 16 41 H 0.04 0.44 8.04 -51.93 -0.42 0.02 16 42 H 0.08 0.96 5.56 -51.93 -0.29 0.67 16 43 H 0.16 2.43 8.06 -52.49 -0.42 2.00 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.13 1.68 6.39 -52.49 -0.34 1.34 16 48 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 49 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 50 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 413.62 15.07 6.23 6.23 Total: -1.00 -31.75 413.62 -9.51 -41.26 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.10 Total: 3.84 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -2.80 Total: -9.97 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.37 Total: -52.19 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.45 Total: -5.40 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.75 -9.51 -41.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279412456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.943 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds