Wall clock time and date at job start Wed Apr 1 2020 03:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 116.99979 * 2 1 4 4 C 1.38729 * 120.05713 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94862 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.04845 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.93689 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47427 * 90.00156 * 7 6 5 9 9 C 1.50703 * 109.47504 * 179.97438 * 8 7 6 10 10 N 1.30290 * 126.34881 * 269.96030 * 9 8 7 11 11 N 1.28530 * 110.05234 * 179.75998 * 10 9 8 12 12 C 1.31220 * 109.85739 * 0.45122 * 11 10 9 13 13 N 1.38573 * 126.46742 * 179.81955 * 12 11 10 14 14 C 1.46906 * 110.99827 * 123.64439 * 13 12 11 15 15 C 1.46902 * 111.00412 * 359.69429 * 13 12 11 16 16 H 1.08998 * 109.47116 * 59.99505 * 15 13 12 17 17 C 1.53002 * 109.46789 * 299.99447 * 15 13 12 18 18 C 1.50702 * 109.47561 * 180.02562 * 15 13 12 19 19 H 1.08004 * 119.99412 * 359.97438 * 18 15 13 20 20 C 1.37872 * 120.00353 * 179.97438 * 18 15 13 21 21 N 1.31516 * 119.99829 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 120.00236 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46619 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47066 * 119.99664 * 22 20 18 25 25 H 1.48497 * 109.46928 * 240.00110 * 22 20 18 26 26 N 1.36447 * 107.05744 * 359.56179 * 12 11 10 27 27 C 1.46495 * 127.13707 * 180.28321 * 26 12 11 28 28 C 1.38260 * 120.11595 * 0.25155 * 6 5 4 29 29 C 1.38150 * 120.05324 * 359.45393 * 28 6 5 30 30 H 1.09002 * 109.46958 * 60.00231 * 1 2 3 31 31 H 1.08996 * 109.47012 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47220 * 300.00192 * 1 2 3 33 33 H 1.08006 * 120.02477 * 359.97438 * 4 3 2 34 34 H 1.07989 * 119.97471 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47373 * 329.99628 * 7 6 5 36 36 H 1.09006 * 109.46828 * 209.99924 * 7 6 5 37 37 H 1.09003 * 109.47507 * 59.99454 * 8 7 6 38 38 H 1.09004 * 109.47354 * 300.00022 * 8 7 6 39 39 H 1.09001 * 109.46544 * 59.99935 * 14 13 12 40 40 H 1.09001 * 109.47272 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47033 * 299.99991 * 14 13 12 42 42 H 1.08999 * 109.47254 * 179.97438 * 17 15 13 43 43 H 1.08993 * 109.47392 * 300.00418 * 17 15 13 44 44 H 1.09005 * 109.46778 * 60.00269 * 17 15 13 45 45 H 0.96997 * 119.99699 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.47149 * 89.99841 * 27 26 12 47 47 H 1.09010 * 109.46925 * 209.99798 * 27 26 12 48 48 H 1.09003 * 109.47257 * 329.99594 * 27 26 12 49 49 H 1.07999 * 119.97438 * 179.70140 * 28 6 5 50 50 H 1.07999 * 120.02818 * 180.24179 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0562 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.2181 5.4740 -1.4392 9 6 4.9018 6.8170 -1.4381 10 7 4.3169 7.9813 -1.4384 11 7 5.1980 8.9171 -1.4321 12 6 6.4021 8.3956 -1.4371 13 7 7.6008 9.0909 -1.4365 14 6 8.4399 8.6924 -0.2984 15 6 7.3682 10.5414 -1.4365 16 1 6.8028 10.8187 -0.5468 17 6 6.5760 10.9308 -2.6862 18 6 8.6914 11.2625 -1.4364 19 1 9.6131 10.6995 -1.4359 20 6 8.7255 12.6408 -1.4369 21 7 7.6031 13.3263 -1.4380 22 14 10.3658 13.5346 -1.4361 23 1 11.4703 12.5419 -1.4342 24 1 10.4664 14.3856 -2.6488 25 1 10.4646 14.3866 -0.2238 26 7 6.2510 7.0395 -1.4373 27 6 7.3137 6.0312 -1.4363 28 6 1.9211 3.6048 0.0069 29 6 1.2915 2.3751 0.0002 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 4.0209 0.3799 0.0014 34 1 5.1345 2.5750 0.0019 35 1 4.9437 4.9379 0.5169 36 1 3.3578 5.7460 0.5169 37 1 3.2604 5.5547 -1.9535 38 1 4.8463 4.7466 -1.9535 39 1 8.6546 7.6256 -0.3614 40 1 9.3745 9.2528 -0.3222 41 1 7.9133 8.9027 0.6325 42 1 6.4029 12.0069 -2.6860 43 1 7.1413 10.6534 -3.5758 44 1 5.6188 10.4092 -2.6867 45 1 7.6271 14.2959 -1.4387 46 1 7.5763 5.7811 -0.4084 47 1 6.9651 5.1354 -1.9505 48 1 8.1904 6.4267 -1.9494 49 1 1.3342 4.5114 0.0121 50 1 0.2129 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289922706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:46 Heat of formation + Delta-G solvation = 83.890864 kcal Electronic energy + Delta-G solvation = -29508.598252 eV Core-core repulsion = 25538.419394 eV Total energy + Delta-G solvation = -3970.178859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.45864 -40.45798 -38.16766 -37.15479 -34.93898 -34.07391 -32.72548 -31.40053 -30.44591 -29.22358 -28.45028 -27.65500 -27.12546 -25.41252 -24.35432 -23.95346 -22.95152 -21.81310 -21.23417 -20.22574 -19.46582 -18.49208 -16.80590 -16.62687 -16.20009 -16.13665 -16.08737 -15.54152 -15.36051 -14.82600 -14.63239 -14.38600 -14.13736 -13.96700 -13.87345 -13.47495 -13.29566 -13.24328 -12.97265 -12.82340 -12.45552 -12.34677 -12.28493 -11.85637 -11.59003 -11.35719 -11.26657 -11.17589 -11.02244 -10.97924 -10.84445 -10.50564 -10.37956 -10.17843 -10.04518 -9.82712 -9.53624 -9.32978 -9.29451 -8.61896 -8.45911 -8.36303 -7.32067 -6.04065 -4.12163 1.03862 1.10342 2.27383 2.71662 2.91210 3.27378 3.35138 3.37653 3.38467 3.49778 4.31980 4.37710 4.44779 4.55571 4.61627 4.68460 4.73879 4.75872 4.84221 4.92196 5.03206 5.06774 5.10285 5.14810 5.19572 5.27354 5.28877 5.38989 5.46594 5.55809 5.63811 5.74766 5.91400 5.93472 5.99402 6.00013 6.06300 6.20914 6.36055 6.41564 6.45456 6.48661 6.93332 7.03033 7.04349 7.22337 7.40706 7.47487 7.73294 7.74579 7.99563 8.30058 8.46044 8.89641 9.41545 9.52592 11.01998 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.035515 B = 0.001834 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.206616 B =15266.511560 C =15747.230670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.071 4.071 8 C -0.014 4.014 9 C 0.144 3.856 10 N -0.284 5.284 11 N -0.316 5.316 12 C 0.386 3.614 13 N -0.454 5.454 14 C 0.033 3.967 15 C 0.230 3.770 16 H 0.021 0.979 17 C -0.143 4.143 18 C -0.518 4.518 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.882 5.882 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.284 1.284 26 N -0.493 5.493 27 C 0.080 3.920 28 C -0.072 4.072 29 C -0.205 4.205 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.086 0.914 43 H 0.022 0.978 44 H 0.045 0.955 45 H 0.262 0.738 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.128 0.872 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 -26.567 3.530 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.054 4.054 9 C -0.124 4.124 10 N -0.123 5.123 11 N -0.161 5.161 12 C 0.030 3.970 13 N -0.178 5.178 14 C -0.114 4.114 15 C 0.126 3.874 16 H 0.038 0.962 17 C -0.202 4.202 18 C -0.557 4.557 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.520 5.520 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 N -0.190 5.190 27 C -0.064 4.064 28 C -0.090 4.090 29 C -0.224 4.224 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.111 0.889 49 H 0.146 0.854 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.816 -25.597 3.107 27.590 hybrid contribution 1.394 -0.123 0.491 1.483 sum -8.421 -25.720 3.598 27.301 Atomic orbital electron populations 1.23053 0.78373 1.03903 1.01450 1.86061 1.21412 1.27094 1.88830 1.19055 0.92425 0.84122 0.96938 1.20408 0.91351 0.98643 1.06505 1.20877 0.99836 0.90950 0.97805 1.19776 0.93597 0.94963 1.03141 1.20516 1.00841 0.93254 0.96323 1.19827 1.00419 0.87865 0.97251 1.24364 0.80172 0.98260 1.09568 1.73936 1.25964 0.95451 1.16980 1.74841 0.95417 1.21691 1.24133 1.23295 0.93815 0.80375 0.99487 1.59078 1.07423 1.11211 1.40085 1.22435 0.99206 0.99542 0.90251 1.19369 0.96518 0.75373 0.96095 0.96156 1.21970 0.97887 1.03895 0.96403 1.21104 0.91519 0.91071 1.51967 0.91708 1.24904 0.96638 0.97384 0.94966 1.69941 1.25626 1.06867 1.49541 0.86423 0.83558 0.79672 0.77611 1.19760 1.20921 1.21027 1.46050 1.07423 1.06712 1.58850 1.22001 0.90351 0.90924 1.03114 1.20927 0.94055 0.97217 0.96849 1.21244 1.00042 0.92336 1.08794 0.92571 0.88293 0.92631 0.85300 0.85335 0.91084 0.90041 0.88652 0.90474 0.93166 0.88363 0.95296 0.89517 0.95856 0.93596 0.92784 0.90871 0.89839 0.88862 0.85360 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.79 10.50 -19.43 -0.20 -3.00 16 3 C 0.12 1.09 6.69 -39.22 -0.26 0.83 16 4 C -0.15 -1.29 9.99 -39.43 -0.39 -1.69 16 5 C -0.08 -0.62 9.69 -39.60 -0.38 -1.00 16 6 C -0.11 -1.01 5.14 -104.60 -0.54 -1.55 16 7 C -0.07 -0.68 5.32 -27.89 -0.15 -0.82 16 8 C -0.01 -0.15 5.57 -27.88 -0.16 -0.30 16 9 C 0.14 2.29 7.32 -154.01 -1.13 1.17 16 10 N -0.28 -5.82 12.18 32.99 0.40 -5.42 16 11 N -0.32 -7.38 9.01 30.31 0.27 -7.10 16 12 C 0.39 8.09 6.75 -318.89 -2.15 5.93 16 13 N -0.45 -9.94 4.69 -176.08 -0.83 -10.76 16 14 C 0.03 0.60 9.08 60.07 0.55 1.15 16 15 C 0.23 6.00 1.73 -68.86 -0.12 5.88 16 16 H 0.02 0.60 8.11 -51.93 -0.42 0.18 16 17 C -0.14 -3.81 8.77 37.16 0.33 -3.48 16 18 C -0.52 -13.92 7.88 -34.44 -0.27 -14.19 16 19 H 0.06 1.68 6.41 -52.48 -0.34 1.34 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.88 -25.33 11.32 55.43 0.63 -24.70 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 N -0.49 -7.95 3.21 -121.46 -0.39 -8.34 16 27 C 0.08 0.85 9.33 59.84 0.56 1.41 16 28 C -0.07 -0.63 9.69 -39.61 -0.38 -1.01 16 29 C -0.21 -1.72 9.04 -39.43 -0.36 -2.07 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.68 7.27 -51.93 -0.38 0.30 16 39 H 0.05 0.71 5.40 -51.93 -0.28 0.43 16 40 H 0.10 1.85 6.10 -51.93 -0.32 1.53 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 1.21 5.44 -51.93 -0.28 0.92 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 47 H 0.08 0.65 7.25 -51.92 -0.38 0.27 16 48 H 0.09 1.04 7.57 -51.93 -0.39 0.65 16 49 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -34.01 399.17 -10.65 -44.66 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.57 Total: -0.25 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.96 Total: -6.98 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.09 Total: -56.33 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: -0.20 Total: -3.00 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.01 -10.65 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289922706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.551 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds