Wall clock time and date at job start Wed Apr 1 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 116.99979 * 2 1 4 4 C 1.38729 * 120.05713 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94862 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.04845 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.93689 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47427 * 90.00156 * 7 6 5 9 9 C 1.50703 * 109.47504 * 179.97438 * 8 7 6 10 10 N 1.30290 * 126.34881 * 269.96030 * 9 8 7 11 11 N 1.28530 * 110.05234 * 179.75998 * 10 9 8 12 12 C 1.31220 * 109.85739 * 0.45122 * 11 10 9 13 13 N 1.38573 * 126.46742 * 179.81955 * 12 11 10 14 14 C 1.46906 * 110.99827 * 123.64439 * 13 12 11 15 15 C 1.46902 * 111.00412 * 359.69429 * 13 12 11 16 16 H 1.08998 * 109.47116 * 59.99505 * 15 13 12 17 17 C 1.53002 * 109.46789 * 299.99447 * 15 13 12 18 18 C 1.50702 * 109.47561 * 180.02562 * 15 13 12 19 19 H 1.08004 * 119.99412 * 359.97438 * 18 15 13 20 20 C 1.37872 * 120.00353 * 179.97438 * 18 15 13 21 21 N 1.31516 * 119.99829 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 120.00236 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46619 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47066 * 119.99664 * 22 20 18 25 25 H 1.48497 * 109.46928 * 240.00110 * 22 20 18 26 26 N 1.36447 * 107.05744 * 359.56179 * 12 11 10 27 27 C 1.46495 * 127.13707 * 180.28321 * 26 12 11 28 28 C 1.38260 * 120.11595 * 0.25155 * 6 5 4 29 29 C 1.38150 * 120.05324 * 359.45393 * 28 6 5 30 30 H 1.09002 * 109.46958 * 60.00231 * 1 2 3 31 31 H 1.08996 * 109.47012 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47220 * 300.00192 * 1 2 3 33 33 H 1.08006 * 120.02477 * 359.97438 * 4 3 2 34 34 H 1.07989 * 119.97471 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47373 * 329.99628 * 7 6 5 36 36 H 1.09006 * 109.46828 * 209.99924 * 7 6 5 37 37 H 1.09003 * 109.47507 * 59.99454 * 8 7 6 38 38 H 1.09004 * 109.47354 * 300.00022 * 8 7 6 39 39 H 1.09001 * 109.46544 * 59.99935 * 14 13 12 40 40 H 1.09001 * 109.47272 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47033 * 299.99991 * 14 13 12 42 42 H 1.08999 * 109.47254 * 179.97438 * 17 15 13 43 43 H 1.08993 * 109.47392 * 300.00418 * 17 15 13 44 44 H 1.09005 * 109.46778 * 60.00269 * 17 15 13 45 45 H 0.96997 * 119.99699 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.47149 * 89.99841 * 27 26 12 47 47 H 1.09010 * 109.46925 * 209.99798 * 27 26 12 48 48 H 1.09003 * 109.47257 * 329.99594 * 27 26 12 49 49 H 1.07999 * 119.97438 * 179.70140 * 28 6 5 50 50 H 1.07999 * 120.02818 * 180.24179 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0562 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.2181 5.4740 -1.4392 9 6 4.9018 6.8170 -1.4381 10 7 4.3169 7.9813 -1.4384 11 7 5.1980 8.9171 -1.4321 12 6 6.4021 8.3956 -1.4371 13 7 7.6008 9.0909 -1.4365 14 6 8.4399 8.6924 -0.2984 15 6 7.3682 10.5414 -1.4365 16 1 6.8028 10.8187 -0.5468 17 6 6.5760 10.9308 -2.6862 18 6 8.6914 11.2625 -1.4364 19 1 9.6131 10.6995 -1.4359 20 6 8.7255 12.6408 -1.4369 21 7 7.6031 13.3263 -1.4380 22 14 10.3658 13.5346 -1.4361 23 1 11.4703 12.5419 -1.4342 24 1 10.4664 14.3856 -2.6488 25 1 10.4646 14.3866 -0.2238 26 7 6.2510 7.0395 -1.4373 27 6 7.3137 6.0312 -1.4363 28 6 1.9211 3.6048 0.0069 29 6 1.2915 2.3751 0.0002 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 4.0209 0.3799 0.0014 34 1 5.1345 2.5750 0.0019 35 1 4.9437 4.9379 0.5169 36 1 3.3578 5.7460 0.5169 37 1 3.2604 5.5547 -1.9535 38 1 4.8463 4.7466 -1.9535 39 1 8.6546 7.6256 -0.3614 40 1 9.3745 9.2528 -0.3222 41 1 7.9133 8.9027 0.6325 42 1 6.4029 12.0069 -2.6860 43 1 7.1413 10.6534 -3.5758 44 1 5.6188 10.4092 -2.6867 45 1 7.6271 14.2959 -1.4387 46 1 7.5763 5.7811 -0.4084 47 1 6.9651 5.1354 -1.9505 48 1 8.1904 6.4267 -1.9494 49 1 1.3342 4.5114 0.0121 50 1 0.2129 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289922706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:45 Heat of formation + Delta-G solvation = 65.319979 kcal Electronic energy + Delta-G solvation = -29509.403546 eV Core-core repulsion = 25538.419394 eV Total energy + Delta-G solvation = -3970.984153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.88948 -41.04396 -38.97860 -38.67965 -36.14974 -35.26619 -34.46502 -32.00482 -31.50392 -31.14736 -29.49876 -28.54007 -27.95322 -27.21885 -25.97856 -24.95160 -23.62559 -23.48287 -21.98671 -21.42444 -21.12516 -19.05265 -18.53731 -17.71406 -17.51670 -17.20172 -16.98622 -16.61971 -16.46841 -16.33946 -15.67305 -15.52199 -15.18189 -15.05878 -14.72545 -14.53317 -14.44408 -14.25708 -14.01463 -13.88847 -13.77148 -13.46798 -13.10123 -12.97873 -12.82533 -12.78498 -12.71075 -12.38106 -12.24249 -12.12053 -12.09234 -12.00576 -11.98712 -11.82239 -11.61332 -11.42592 -11.01491 -10.90856 -10.55350 -10.44069 -9.90362 -9.08208 -8.92378 -8.12444 -6.28421 0.43666 0.45454 0.92465 1.41098 1.45265 1.47540 1.58406 1.94582 2.41973 2.42526 2.81715 3.02381 3.19097 3.41355 3.79619 3.86202 3.97824 4.03810 4.08425 4.18171 4.28504 4.30181 4.37722 4.39962 4.41177 4.48291 4.50303 4.51177 4.62612 4.68807 4.74244 4.77550 4.80738 4.84291 4.88341 4.98982 5.11304 5.16986 5.18282 5.20224 5.33732 5.37155 5.42924 5.44804 5.60813 5.66429 5.74886 5.87349 5.97470 6.05877 6.17791 6.48160 6.61315 6.81994 7.40596 7.94457 8.94482 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.035515 B = 0.001834 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.206616 B =15266.511560 C =15747.230670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.107 3.893 4 C -0.162 4.162 5 C -0.073 4.073 6 C -0.121 4.121 7 C -0.060 4.060 8 C -0.010 4.010 9 C 0.176 3.824 10 N -0.334 5.334 11 N -0.369 5.369 12 C 0.363 3.637 13 N -0.456 5.456 14 C 0.034 3.966 15 C 0.242 3.758 16 H -0.026 1.026 17 C -0.128 4.128 18 C -0.527 4.527 19 H 0.076 0.924 20 C 0.010 3.990 21 N -0.919 5.919 22 Si 0.971 3.029 23 H -0.257 1.257 24 H -0.283 1.283 25 H -0.282 1.282 26 N -0.483 5.483 27 C 0.064 3.936 28 C -0.083 4.083 29 C -0.212 4.212 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.015 0.985 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.043 0.957 45 H 0.263 0.737 46 H 0.100 0.900 47 H 0.122 0.878 48 H 0.091 0.909 49 H 0.131 0.869 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 -29.801 3.584 30.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.062 3.938 4 C -0.181 4.181 5 C -0.090 4.090 6 C -0.121 4.121 7 C -0.098 4.098 8 C -0.049 4.049 9 C -0.094 4.094 10 N -0.173 5.173 11 N -0.213 5.213 12 C 0.006 3.994 13 N -0.179 5.179 14 C -0.112 4.112 15 C 0.137 3.863 16 H -0.009 1.009 17 C -0.186 4.186 18 C -0.566 4.566 19 H 0.094 0.906 20 C -0.189 4.189 21 N -0.558 5.558 22 Si 0.796 3.204 23 H -0.181 1.181 24 H -0.209 1.209 25 H -0.208 1.208 26 N -0.179 5.179 27 C -0.077 4.077 28 C -0.101 4.101 29 C -0.230 4.230 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.141 0.859 48 H 0.110 0.890 49 H 0.149 0.851 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.208 -28.887 3.165 30.197 hybrid contribution 0.756 0.677 0.506 1.134 sum -7.452 -28.210 3.671 29.407 Atomic orbital electron populations 1.23298 0.76744 1.05405 1.02074 1.86037 1.23220 1.27118 1.88802 1.19313 0.92999 0.84472 0.97005 1.20668 0.91445 0.99407 1.06539 1.21113 1.01014 0.90231 0.96686 1.19706 0.93594 0.94718 1.04118 1.20361 1.01147 0.93227 0.95091 1.20105 1.00618 0.85520 0.98699 1.25317 0.80141 0.98918 1.04983 1.73836 1.26469 0.96795 1.20153 1.74663 0.96972 1.24138 1.25552 1.23139 0.92887 0.82434 1.00965 1.58988 1.08344 1.08857 1.41736 1.22530 0.97863 1.02281 0.88559 1.18940 0.95524 0.78432 0.93417 1.00863 1.21768 0.98029 1.02023 0.96807 1.21415 0.92062 0.91549 1.51530 0.90633 1.25836 1.00280 0.98326 0.94466 1.70104 1.28091 1.07083 1.50526 0.85303 0.79304 0.78395 0.77378 1.18099 1.20913 1.20763 1.46276 1.08601 1.05675 1.57344 1.22518 0.88980 0.90659 1.05527 1.21092 0.94456 0.97580 0.97000 1.21414 1.00911 0.92057 1.08661 0.91931 0.86470 0.91988 0.84284 0.82931 0.89991 0.91813 0.88474 0.87084 0.88520 0.89012 0.96653 0.92155 0.96133 0.93803 0.92816 0.88157 0.85944 0.89000 0.85074 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.39 10.50 -92.45 -0.97 -6.36 16 3 C 0.11 1.78 6.69 22.51 0.15 1.93 16 4 C -0.16 -2.41 9.99 22.36 0.22 -2.18 16 5 C -0.07 -0.94 9.69 22.26 0.22 -0.72 16 6 C -0.12 -1.84 5.14 -19.85 -0.10 -1.94 16 7 C -0.06 -0.99 5.32 29.85 0.16 -0.83 16 8 C -0.01 -0.18 5.57 29.85 0.17 -0.02 16 9 C 0.18 5.34 7.32 137.64 1.01 6.34 16 10 N -0.33 -13.96 12.18 -49.53 -0.60 -14.57 16 11 N -0.37 -17.88 9.01 -58.01 -0.52 -18.40 16 12 C 0.36 15.31 6.75 260.12 1.76 17.07 16 13 N -0.46 -20.07 4.69 -710.98 -3.33 -23.40 16 14 C 0.03 1.22 9.08 127.69 1.16 2.38 16 15 C 0.24 13.13 1.73 44.17 0.08 13.21 16 16 H -0.03 -1.64 8.11 -2.39 -0.02 -1.66 16 17 C -0.13 -7.14 8.77 71.98 0.63 -6.51 16 18 C -0.53 -28.76 7.88 25.60 0.20 -28.56 16 19 H 0.08 3.87 6.41 -2.91 -0.02 3.85 16 20 C 0.01 0.57 5.30 84.65 0.45 1.02 16 21 N -0.92 -54.69 11.32 21.45 0.24 -54.45 16 22 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 N -0.48 -14.57 3.21 -538.19 -1.73 -16.29 16 27 C 0.06 1.09 9.33 127.77 1.19 2.28 16 28 C -0.08 -1.33 9.69 22.25 0.22 -1.11 16 29 C -0.21 -3.23 9.04 22.37 0.20 -3.03 16 30 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.43 7.66 -2.39 -0.02 0.42 16 33 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.15 1.16 8.06 -2.92 -0.02 1.14 16 35 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 36 H 0.06 1.30 8.08 -2.38 -0.02 1.28 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.38 7.27 -2.38 -0.02 1.36 16 39 H 0.10 2.47 5.40 -2.39 -0.01 2.46 16 40 H 0.09 3.36 6.10 -2.39 -0.01 3.35 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 3.65 6.07 -2.39 -0.01 3.63 16 43 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 2.44 5.44 -2.38 -0.01 2.42 16 45 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 46 H 0.10 1.23 7.85 -2.39 -0.02 1.21 16 47 H 0.12 1.18 7.25 -2.38 -0.02 1.16 16 48 H 0.09 1.67 7.57 -2.39 -0.02 1.65 16 49 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 50 H 0.14 1.61 6.30 -2.91 -0.02 1.59 16 Total: -1.00 -79.01 399.17 4.88 -74.14 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.94 Total: 13.63 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 8.82 Total: 0.61 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -5.94 Total: -127.11 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.97 Total: -6.36 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -79.01 4.88 -74.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289922706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.457 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds