Wall clock time and date at job start Wed Apr 1 2020 03:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47045 * 2 1 4 4 C 1.46896 * 110.99864 * 75.27029 * 3 2 1 5 5 C 1.50703 * 109.47545 * 189.07782 * 4 3 2 6 6 C 1.35067 * 126.07641 * 260.76729 * 5 4 3 7 7 N 1.35051 * 107.98361 * 180.14097 * 6 5 4 8 8 C 1.46499 * 125.92782 * 179.86530 * 7 6 5 9 9 C 1.50699 * 109.47215 * 124.71626 * 8 7 6 10 10 H 1.08010 * 119.99684 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00508 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99922 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00382 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46967 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47384 * 120.00153 * 13 11 9 16 16 H 1.48501 * 109.47308 * 240.00224 * 13 11 9 17 17 N 1.40067 * 108.14497 * 359.60830 * 7 6 5 18 18 C 1.31648 * 108.10219 * 0.23531 * 17 7 6 19 19 C 1.48370 * 126.04353 * 179.97438 * 18 17 7 20 20 C 1.39776 * 120.90186 * 136.70185 * 19 18 17 21 21 C 1.37963 * 119.01725 * 179.73340 * 20 19 18 22 22 N 1.31931 * 120.88206 * 0.55375 * 21 20 19 23 23 C 1.31940 * 122.00430 * 359.71314 * 22 21 20 24 24 C 1.37965 * 120.88193 * 0.02562 * 23 22 21 25 25 C 1.46898 * 110.99718 * 199.22377 * 3 2 1 26 26 C 1.53002 * 109.47291 * 66.04836 * 25 3 2 27 27 H 1.08994 * 109.46976 * 304.99763 * 26 25 3 28 28 C 1.52997 * 109.47226 * 184.99669 * 26 25 3 29 29 O 1.42898 * 109.47026 * 64.99760 * 26 25 3 30 30 H 1.09002 * 109.47086 * 301.26106 * 1 2 3 31 31 H 1.09002 * 109.47110 * 61.25978 * 1 2 3 32 32 H 1.09001 * 109.47678 * 181.26285 * 1 2 3 33 33 H 1.09002 * 109.46966 * 240.00290 * 2 1 3 34 34 H 1.08992 * 109.46897 * 120.00260 * 2 1 3 35 35 H 1.09005 * 109.47372 * 69.08101 * 4 3 2 36 36 H 1.09000 * 109.47621 * 309.08078 * 4 3 2 37 37 H 1.08002 * 126.00496 * 359.97438 * 6 5 4 38 38 H 1.08999 * 109.47346 * 244.71764 * 8 7 6 39 39 H 1.09008 * 109.46988 * 4.72130 * 8 7 6 40 40 H 0.96995 * 120.00158 * 180.02562 * 12 11 9 41 41 H 1.07990 * 120.48864 * 359.97438 * 20 19 18 42 42 H 1.07998 * 119.55558 * 180.24528 * 21 20 19 43 43 H 1.08003 * 119.56309 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.49272 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.46911 * 186.04719 * 25 3 2 46 46 H 1.08997 * 109.47295 * 306.04378 * 25 3 2 47 47 H 1.08999 * 109.46980 * 59.99788 * 28 26 25 48 48 H 1.08991 * 109.47170 * 180.02562 * 28 26 25 49 49 H 1.09003 * 109.47282 * 300.00055 * 28 26 25 50 50 H 0.96710 * 114.00234 * 59.99915 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8663 1.9975 1.3263 5 6 2.1666 3.4716 1.2368 6 6 3.3311 4.0679 1.5725 7 7 3.1993 5.3938 1.3520 8 6 4.2274 6.4107 1.5872 9 6 4.4617 7.1907 0.3193 10 1 3.9005 6.9530 -0.5725 11 6 5.3923 8.2078 0.2975 12 7 6.0760 8.4969 1.3832 13 14 5.6833 9.1742 -1.2743 14 1 4.7946 8.6563 -2.3454 15 1 5.3854 10.6093 -1.0355 16 1 7.1007 9.0256 -1.6916 17 7 1.9112 5.6272 0.8539 18 6 1.2846 4.4717 0.7824 19 6 -0.1051 4.2600 0.3079 20 6 -0.4186 3.1975 -0.5446 21 6 -1.7248 3.0339 -0.9575 22 7 -2.6681 3.8696 -0.5673 23 6 -2.4133 4.8878 0.2321 24 6 -1.1352 5.1213 0.6962 25 6 3.4160 1.4496 -0.4516 26 6 3.4962 1.0352 -1.9222 27 1 3.0440 0.0515 -2.0476 28 6 4.9618 0.9822 -2.3580 29 8 2.7950 1.9876 -2.7243 30 1 -0.3633 0.5333 0.8785 31 1 -0.3633 0.4941 -0.9011 32 1 -0.3634 -1.0274 0.0226 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.5580 1.5277 2.0257 36 1 0.8438 1.8556 1.6762 37 1 4.2117 3.5720 1.9532 38 1 3.8954 7.0877 2.3742 39 1 5.1549 5.9259 1.8922 40 1 6.7304 9.2126 1.3680 41 1 0.3495 2.5126 -0.8718 42 1 -1.9775 2.2136 -1.6130 43 1 -3.2160 5.5475 0.5272 44 1 -0.9338 5.9564 1.3506 45 1 3.7870 2.4685 -0.3404 46 1 4.0240 0.7740 0.1500 47 1 5.4967 0.2558 -1.7461 48 1 5.0189 0.6874 -3.4057 49 1 5.4140 1.9660 -2.2325 50 1 3.1440 2.8874 -2.6619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348699951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:24 Heat of formation + Delta-G solvation = 61.659901 kcal Electronic energy + Delta-G solvation = -31280.091210 eV Core-core repulsion = 27308.948345 eV Total energy + Delta-G solvation = -3971.142865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.83480 -39.45588 -38.59051 -36.34683 -34.10522 -32.86026 -31.74217 -31.50612 -30.90134 -30.59209 -29.31955 -27.64392 -26.07231 -24.31450 -24.08522 -23.06313 -22.33338 -21.97449 -20.70985 -20.05083 -19.26444 -16.86458 -16.69866 -16.48148 -16.04992 -15.74941 -15.61506 -15.32400 -15.11434 -15.01859 -14.45806 -14.22400 -14.03021 -13.84822 -13.56329 -13.34396 -13.17238 -13.15039 -12.78552 -12.48196 -12.31981 -12.09486 -12.01645 -11.90984 -11.83597 -11.67182 -11.35523 -11.26544 -11.09045 -10.97562 -10.88333 -10.52420 -10.34405 -10.08176 -9.93516 -9.89419 -9.40503 -9.24865 -8.85562 -8.73252 -8.45839 -8.20307 -7.72291 -6.33946 -4.39420 1.34326 1.46312 2.57718 3.15947 3.16797 3.25204 3.29515 3.39740 3.95395 4.19001 4.24345 4.52190 4.69520 4.73254 4.80854 4.94402 5.01682 5.06593 5.07923 5.16558 5.18953 5.24336 5.39114 5.44280 5.45463 5.47551 5.53827 5.56652 5.64755 5.69274 5.74411 5.85296 5.93402 5.96451 5.98660 6.05636 6.14344 6.18665 6.25220 6.27970 6.44035 6.65501 6.83576 6.92194 7.01054 7.10575 7.11036 7.21985 7.59456 7.75558 7.79328 7.84968 8.21734 8.42341 8.69492 9.27310 10.75029 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.004128 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.181751 B = 6781.478877 C = 8449.919166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 N -0.523 5.523 4 C 0.139 3.861 5 C -0.236 4.236 6 C 0.051 3.949 7 N -0.317 5.317 8 C 0.256 3.744 9 C -0.529 4.529 10 H 0.070 0.930 11 C 0.064 3.936 12 N -0.894 5.894 13 Si 0.906 3.094 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.281 1.281 17 N -0.259 5.259 18 C 0.087 3.913 19 C 0.048 3.952 20 C -0.146 4.146 21 C 0.085 3.915 22 N -0.493 5.493 23 C 0.086 3.914 24 C -0.153 4.153 25 C 0.021 3.979 26 C 0.108 3.892 27 H 0.094 0.906 28 C -0.187 4.187 29 O -0.552 6.552 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.162 0.838 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.267 0.733 41 H 0.171 0.829 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.133 0.867 45 H 0.087 0.913 46 H 0.037 0.963 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -17.271 -1.281 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 N -0.247 5.247 4 C 0.011 3.989 5 C -0.249 4.249 6 C -0.100 4.100 7 N -0.097 5.097 8 C 0.138 3.862 9 C -0.567 4.567 10 H 0.088 0.912 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.733 3.267 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.207 1.207 17 N -0.083 5.083 18 C -0.076 4.076 19 C 0.038 3.962 20 C -0.166 4.166 21 C -0.071 4.071 22 N -0.203 5.203 23 C -0.070 4.070 24 C -0.174 4.174 25 C -0.108 4.108 26 C 0.048 3.952 27 H 0.111 0.889 28 C -0.245 4.245 29 O -0.358 6.358 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.179 0.821 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.188 0.812 42 H 0.167 0.833 43 H 0.168 0.832 44 H 0.151 0.849 45 H 0.106 0.894 46 H 0.055 0.945 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.203 -16.127 -2.124 18.218 hybrid contribution 2.368 0.038 0.609 2.445 sum -5.835 -16.090 -1.515 17.182 Atomic orbital electron populations 1.21854 0.94878 1.01056 1.02829 1.22152 0.96368 0.89270 1.00428 1.61938 1.19492 1.16732 1.26513 1.20234 1.00734 0.89516 0.88416 1.19519 0.94336 0.95057 1.15988 1.22204 0.99056 0.85816 1.02882 1.49406 1.10439 1.06130 1.43733 1.19788 0.82522 0.85028 0.98820 1.21251 1.22139 1.17032 0.96328 0.91182 1.24931 0.95176 0.96650 0.97154 1.69920 1.24826 1.30829 1.27663 0.86289 0.78031 0.79716 0.82629 1.19430 1.20598 1.20737 1.77707 0.91795 1.20852 1.17951 1.20261 0.93499 0.91288 1.02537 1.18181 0.89621 0.93995 0.94406 1.22908 0.98934 0.98388 0.96411 1.22591 0.89021 0.97497 0.97991 1.67555 1.37140 1.04070 1.11487 1.22528 0.95394 0.94894 0.94225 1.22258 0.93528 1.00057 1.01514 1.22890 0.89184 1.02706 0.95985 1.21886 0.91230 0.93203 0.88854 0.88871 1.22504 0.97101 1.02855 1.02063 1.86535 1.59832 1.21236 1.68164 0.92659 0.91526 0.92783 0.90885 0.95105 0.94789 0.90425 0.82070 0.93585 0.92745 0.92296 0.81167 0.83286 0.83199 0.84943 0.89446 0.94515 0.91942 0.91823 0.91938 0.77645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.18 37.16 0.34 -0.97 16 2 C 0.05 0.42 5.57 -3.82 -0.02 0.40 16 3 N -0.52 -5.83 2.31 -236.08 -0.54 -6.38 16 4 C 0.14 1.73 4.38 -4.98 -0.02 1.70 16 5 C -0.24 -3.75 4.71 -104.75 -0.49 -4.24 16 6 C 0.05 0.87 10.30 -17.26 -0.18 0.69 16 7 N -0.32 -6.71 3.67 -62.58 -0.23 -6.94 16 8 C 0.26 6.12 6.26 -5.19 -0.03 6.08 16 9 C -0.53 -14.06 9.23 -34.44 -0.32 -14.38 16 10 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 13 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 N -0.26 -5.60 12.44 33.42 0.42 -5.18 16 18 C 0.09 1.59 6.72 -82.78 -0.56 1.03 16 19 C 0.05 0.78 5.76 -104.58 -0.60 0.18 16 20 C -0.15 -2.08 8.35 -39.11 -0.33 -2.41 16 21 C 0.09 1.15 11.10 -17.61 -0.20 0.95 16 22 N -0.49 -7.18 10.35 -13.34 -0.14 -7.32 16 23 C 0.09 1.19 11.17 -17.61 -0.20 1.00 16 24 C -0.15 -2.33 9.89 -39.11 -0.39 -2.72 16 25 C 0.02 0.23 4.46 -3.82 -0.02 0.21 16 26 C 0.11 1.13 3.57 -26.73 -0.10 1.03 16 27 H 0.09 0.91 6.08 -51.93 -0.32 0.60 16 28 C -0.19 -1.75 9.53 37.16 0.35 -1.40 16 29 O -0.55 -7.09 13.29 -35.23 -0.47 -7.55 16 30 H 0.05 0.53 6.74 -51.93 -0.35 0.18 16 31 H 0.07 0.63 7.03 -51.93 -0.37 0.26 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.63 5.82 -51.93 -0.30 0.33 16 34 H 0.03 0.27 8.01 -51.93 -0.42 -0.15 16 35 H 0.03 0.39 8.13 -51.93 -0.42 -0.03 16 36 H 0.08 0.97 6.57 -51.93 -0.34 0.63 16 37 H 0.16 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.28 8.07 -51.92 -0.42 0.86 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.17 2.39 4.50 -52.49 -0.24 2.15 16 42 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.15 1.65 8.06 -52.48 -0.42 1.22 16 44 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 45 H 0.09 1.16 6.19 -51.93 -0.32 0.84 16 46 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.38 4.56 9.05 45.56 0.41 4.98 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -29.66 405.21 -8.83 -38.49 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.85 Total: 7.99 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.84 Total: -11.23 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.24 Total: -49.62 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.47 Total: -7.55 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.66 -8.83 -38.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348699951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.153 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds