Wall clock time and date at job start Wed Apr 1 2020 03:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47045 * 2 1 4 4 C 1.46896 * 110.99864 * 75.27029 * 3 2 1 5 5 C 1.50703 * 109.47545 * 189.07782 * 4 3 2 6 6 C 1.35067 * 126.07641 * 260.76729 * 5 4 3 7 7 N 1.35051 * 107.98361 * 180.14097 * 6 5 4 8 8 C 1.46499 * 125.92782 * 179.86530 * 7 6 5 9 9 C 1.50699 * 109.47215 * 124.71626 * 8 7 6 10 10 H 1.08010 * 119.99684 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00508 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99922 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00382 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46967 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47384 * 120.00153 * 13 11 9 16 16 H 1.48501 * 109.47308 * 240.00224 * 13 11 9 17 17 N 1.40067 * 108.14497 * 359.60830 * 7 6 5 18 18 C 1.31648 * 108.10219 * 0.23531 * 17 7 6 19 19 C 1.48370 * 126.04353 * 179.97438 * 18 17 7 20 20 C 1.39776 * 120.90186 * 136.70185 * 19 18 17 21 21 C 1.37963 * 119.01725 * 179.73340 * 20 19 18 22 22 N 1.31931 * 120.88206 * 0.55375 * 21 20 19 23 23 C 1.31940 * 122.00430 * 359.71314 * 22 21 20 24 24 C 1.37965 * 120.88193 * 0.02562 * 23 22 21 25 25 C 1.46898 * 110.99718 * 199.22377 * 3 2 1 26 26 C 1.53002 * 109.47291 * 66.04836 * 25 3 2 27 27 H 1.08994 * 109.46976 * 304.99763 * 26 25 3 28 28 C 1.52997 * 109.47226 * 184.99669 * 26 25 3 29 29 O 1.42898 * 109.47026 * 64.99760 * 26 25 3 30 30 H 1.09002 * 109.47086 * 301.26106 * 1 2 3 31 31 H 1.09002 * 109.47110 * 61.25978 * 1 2 3 32 32 H 1.09001 * 109.47678 * 181.26285 * 1 2 3 33 33 H 1.09002 * 109.46966 * 240.00290 * 2 1 3 34 34 H 1.08992 * 109.46897 * 120.00260 * 2 1 3 35 35 H 1.09005 * 109.47372 * 69.08101 * 4 3 2 36 36 H 1.09000 * 109.47621 * 309.08078 * 4 3 2 37 37 H 1.08002 * 126.00496 * 359.97438 * 6 5 4 38 38 H 1.08999 * 109.47346 * 244.71764 * 8 7 6 39 39 H 1.09008 * 109.46988 * 4.72130 * 8 7 6 40 40 H 0.96995 * 120.00158 * 180.02562 * 12 11 9 41 41 H 1.07990 * 120.48864 * 359.97438 * 20 19 18 42 42 H 1.07998 * 119.55558 * 180.24528 * 21 20 19 43 43 H 1.08003 * 119.56309 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.49272 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.46911 * 186.04719 * 25 3 2 46 46 H 1.08997 * 109.47295 * 306.04378 * 25 3 2 47 47 H 1.08999 * 109.46980 * 59.99788 * 28 26 25 48 48 H 1.08991 * 109.47170 * 180.02562 * 28 26 25 49 49 H 1.09003 * 109.47282 * 300.00055 * 28 26 25 50 50 H 0.96710 * 114.00234 * 59.99915 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8663 1.9975 1.3263 5 6 2.1666 3.4716 1.2368 6 6 3.3311 4.0679 1.5725 7 7 3.1993 5.3938 1.3520 8 6 4.2274 6.4107 1.5872 9 6 4.4617 7.1907 0.3193 10 1 3.9005 6.9530 -0.5725 11 6 5.3923 8.2078 0.2975 12 7 6.0760 8.4969 1.3832 13 14 5.6833 9.1742 -1.2743 14 1 4.7946 8.6563 -2.3454 15 1 5.3854 10.6093 -1.0355 16 1 7.1007 9.0256 -1.6916 17 7 1.9112 5.6272 0.8539 18 6 1.2846 4.4717 0.7824 19 6 -0.1051 4.2600 0.3079 20 6 -0.4186 3.1975 -0.5446 21 6 -1.7248 3.0339 -0.9575 22 7 -2.6681 3.8696 -0.5673 23 6 -2.4133 4.8878 0.2321 24 6 -1.1352 5.1213 0.6962 25 6 3.4160 1.4496 -0.4516 26 6 3.4962 1.0352 -1.9222 27 1 3.0440 0.0515 -2.0476 28 6 4.9618 0.9822 -2.3580 29 8 2.7950 1.9876 -2.7243 30 1 -0.3633 0.5333 0.8785 31 1 -0.3633 0.4941 -0.9011 32 1 -0.3634 -1.0274 0.0226 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.5580 1.5277 2.0257 36 1 0.8438 1.8556 1.6762 37 1 4.2117 3.5720 1.9532 38 1 3.8954 7.0877 2.3742 39 1 5.1549 5.9259 1.8922 40 1 6.7304 9.2126 1.3680 41 1 0.3495 2.5126 -0.8718 42 1 -1.9775 2.2136 -1.6130 43 1 -3.2160 5.5475 0.5272 44 1 -0.9338 5.9564 1.3506 45 1 3.7870 2.4685 -0.3404 46 1 4.0240 0.7740 0.1500 47 1 5.4967 0.2558 -1.7461 48 1 5.0189 0.6874 -3.4057 49 1 5.4140 1.9660 -2.2325 50 1 3.1440 2.8874 -2.6619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348699951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:23 Heat of formation + Delta-G solvation = 43.246808 kcal Electronic energy + Delta-G solvation = -31280.889662 eV Core-core repulsion = 27308.948345 eV Total energy + Delta-G solvation = -3971.941317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.21726 -40.63215 -39.50306 -37.27875 -35.82841 -34.44864 -32.86612 -32.46513 -32.06638 -31.93766 -30.38538 -29.17260 -27.27121 -25.75555 -25.19564 -24.20728 -23.59201 -23.02730 -21.62850 -21.44209 -20.54527 -18.67851 -18.10345 -17.46566 -17.09245 -17.04856 -16.78673 -16.42927 -16.34762 -16.10426 -15.83960 -15.55671 -15.19115 -14.82213 -14.65883 -14.60877 -14.33518 -14.21331 -14.09542 -13.76363 -13.69943 -13.45751 -13.08786 -12.91632 -12.84166 -12.73106 -12.67816 -12.57754 -12.43213 -12.31367 -12.12487 -11.81372 -11.73965 -11.54771 -11.28259 -10.86902 -10.80950 -10.74557 -10.39590 -9.98439 -9.87634 -9.25432 -8.99915 -8.37302 -6.50507 0.11665 0.34561 1.15946 1.33352 1.36721 1.48481 1.81494 1.88684 2.31728 2.95006 2.98801 3.10356 3.52414 3.66280 3.67860 3.83749 3.90514 4.12577 4.12839 4.24016 4.25889 4.32009 4.34343 4.38040 4.42515 4.49501 4.61020 4.65708 4.73869 4.80089 4.85508 4.89064 4.90031 4.90645 5.00631 5.05670 5.09803 5.16504 5.19816 5.22892 5.26900 5.33627 5.50520 5.54394 5.60035 5.72983 5.83325 5.89762 6.18041 6.26371 6.31688 6.61315 6.85907 6.96409 7.10099 7.20016 8.70880 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.004128 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.181751 B = 6781.478877 C = 8449.919166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 N -0.530 5.530 4 C 0.146 3.854 5 C -0.222 4.222 6 C 0.049 3.951 7 N -0.343 5.343 8 C 0.272 3.728 9 C -0.543 4.543 10 H 0.051 0.949 11 C 0.022 3.978 12 N -0.920 5.920 13 Si 0.966 3.034 14 H -0.275 1.275 15 H -0.275 1.275 16 H -0.268 1.268 17 N -0.313 5.313 18 C 0.091 3.909 19 C 0.025 3.975 20 C -0.138 4.138 21 C 0.091 3.909 22 N -0.502 5.502 23 C 0.090 3.910 24 C -0.164 4.164 25 C 0.025 3.975 26 C 0.109 3.891 27 H 0.106 0.894 28 C -0.182 4.182 29 O -0.569 6.569 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.189 0.811 38 H 0.018 0.982 39 H 0.056 0.944 40 H 0.272 0.728 41 H 0.175 0.825 42 H 0.179 0.821 43 H 0.178 0.822 44 H 0.126 0.874 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.049 0.951 50 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 -19.661 -2.155 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 N -0.254 5.254 4 C 0.018 3.982 5 C -0.235 4.235 6 C -0.099 4.099 7 N -0.123 5.123 8 C 0.153 3.847 9 C -0.581 4.581 10 H 0.069 0.931 11 C -0.178 4.178 12 N -0.559 5.559 13 Si 0.791 3.209 14 H -0.200 1.200 15 H -0.201 1.201 16 H -0.193 1.193 17 N -0.137 5.137 18 C -0.073 4.073 19 C 0.015 3.985 20 C -0.159 4.159 21 C -0.065 4.065 22 N -0.212 5.212 23 C -0.066 4.066 24 C -0.186 4.186 25 C -0.103 4.103 26 C 0.050 3.950 27 H 0.124 0.876 28 C -0.240 4.240 29 O -0.375 6.375 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.206 0.794 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.192 0.808 42 H 0.196 0.804 43 H 0.195 0.805 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.852 -18.545 -2.991 20.766 hybrid contribution 2.463 0.668 0.877 2.699 sum -6.389 -17.878 -2.113 19.103 Atomic orbital electron populations 1.21834 0.94544 1.01957 1.02025 1.22215 0.96586 0.87908 1.01368 1.61860 1.19718 1.18288 1.25574 1.20197 1.01250 0.87160 0.89612 1.19881 0.93053 0.96635 1.13882 1.22742 1.00512 0.84389 1.02234 1.49062 1.10209 1.06909 1.46118 1.19287 0.83218 0.85260 0.96885 1.21369 1.22122 1.17932 0.96657 0.93102 1.25663 0.94836 0.97344 0.99992 1.69990 1.25269 1.31406 1.29205 0.85378 0.78293 0.78317 0.78939 1.19999 1.20094 1.19313 1.77621 0.92524 1.23168 1.20394 1.20734 0.94389 0.91024 1.01117 1.18347 0.88874 0.95416 0.95897 1.22923 0.99535 0.97654 0.95801 1.23039 0.88319 0.97712 0.97479 1.67659 1.37462 1.04386 1.11674 1.22910 0.95400 0.94915 0.93365 1.22314 0.94217 0.99973 1.02056 1.22816 0.89287 1.01520 0.96691 1.21996 0.91778 0.93054 0.88138 0.87623 1.22452 0.96449 1.02607 1.02506 1.86508 1.60596 1.21548 1.68819 0.93574 0.92146 0.91065 0.89951 0.94038 0.93251 0.90149 0.79403 0.96410 0.92603 0.91853 0.80812 0.80399 0.80494 0.85644 0.92053 0.92939 0.90320 0.91627 0.93212 0.77778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.18 71.98 0.66 -1.50 16 2 C 0.05 0.71 5.57 86.30 0.48 1.19 16 3 N -0.53 -10.75 2.31 -900.81 -2.08 -12.82 16 4 C 0.15 3.37 4.38 85.56 0.37 3.74 16 5 C -0.22 -6.99 4.71 -19.95 -0.09 -7.09 16 6 C 0.05 1.71 10.30 83.47 0.86 2.57 16 7 N -0.34 -15.11 3.67 -351.91 -1.29 -16.40 16 8 C 0.27 13.67 6.26 85.63 0.54 14.21 16 9 C -0.54 -29.94 9.23 25.60 0.24 -29.71 16 10 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 11 C 0.02 1.21 5.46 84.65 0.46 1.67 16 12 N -0.92 -51.34 13.29 21.45 0.28 -51.05 16 13 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 17 N -0.31 -14.18 12.44 -48.16 -0.60 -14.78 16 18 C 0.09 3.38 6.72 42.52 0.29 3.67 16 19 C 0.02 0.80 5.76 -19.84 -0.11 0.69 16 20 C -0.14 -3.78 8.35 22.58 0.19 -3.59 16 21 C 0.09 2.24 11.10 84.61 0.94 3.18 16 22 N -0.50 -13.62 10.35 -196.13 -2.03 -15.65 16 23 C 0.09 2.38 11.17 84.61 0.95 3.32 16 24 C -0.16 -5.04 9.89 22.58 0.22 -4.81 16 25 C 0.03 0.51 4.46 86.30 0.38 0.89 16 26 C 0.11 2.09 3.57 30.59 0.11 2.20 16 27 H 0.11 1.77 6.08 -2.39 -0.01 1.76 16 28 C -0.18 -3.13 9.53 71.98 0.69 -2.44 16 29 O -0.57 -14.13 13.29 -148.98 -1.98 -16.11 16 30 H 0.05 0.77 6.74 -2.39 -0.02 0.76 16 31 H 0.06 0.97 7.03 -2.39 -0.02 0.95 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.14 5.82 -2.39 -0.01 1.13 16 34 H 0.04 0.58 8.01 -2.39 -0.02 0.56 16 35 H 0.05 1.01 8.13 -2.38 -0.02 0.99 16 36 H 0.08 1.85 6.57 -2.39 -0.02 1.83 16 37 H 0.19 5.21 8.06 -2.91 -0.02 5.19 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 2.73 8.07 -2.38 -0.02 2.72 16 40 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.17 4.61 4.50 -2.92 -0.01 4.60 16 42 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 44 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 45 H 0.06 1.59 6.19 -2.39 -0.01 1.58 16 46 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 47 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.37 9.24 9.05 -74.05 -0.67 8.57 16 Total: -1.00 -65.41 405.21 1.78 -63.63 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.28 Total: 29.68 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 7.16 Total: -11.81 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -5.71 Total: -110.70 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -1.98 Total: -16.11 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.41 1.78 -63.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348699951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.874 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds