Wall clock time and date at job start Wed Apr 1 2020 04:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99802 * 2 1 4 4 C 1.46893 * 110.99980 * 123.95197 * 2 1 3 5 5 C 1.53005 * 109.46863 * 66.04626 * 4 2 1 6 6 C 1.53008 * 109.47004 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46714 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99933 * 269.99598 * 7 6 5 9 9 C 1.50702 * 109.47435 * 265.06473 * 8 7 6 10 10 H 1.08003 * 119.99586 * 4.99065 * 9 8 7 11 11 C 1.37872 * 120.00182 * 184.99984 * 9 8 7 12 12 N 1.31514 * 120.00114 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00248 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46676 * 59.99798 * 13 11 9 15 15 H 1.48493 * 109.46976 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47133 * 299.99978 * 13 11 9 17 17 C 1.34779 * 120.00318 * 90.00524 * 7 6 5 18 18 O 1.21735 * 119.99646 * 5.17179 * 17 7 6 19 19 C 1.46423 * 119.99852 * 185.17481 * 17 7 6 20 20 C 1.40107 * 126.85412 * 260.22861 * 19 17 7 21 21 C 1.40066 * 136.37412 * 0.02562 * 20 19 17 22 22 C 1.36073 * 119.47068 * 179.97438 * 21 20 19 23 23 C 1.39480 * 121.57263 * 0.03441 * 22 21 20 24 24 C 1.35825 * 121.83565 * 359.97438 * 23 22 21 25 25 C 1.40922 * 119.54569 * 359.97438 * 24 23 22 26 26 N 1.32147 * 135.41556 * 180.02562 * 25 24 23 27 27 N 1.28450 * 111.38993 * 179.97438 * 26 25 24 28 28 C 1.46502 * 124.15640 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.47240 * 296.04964 * 1 2 3 30 30 H 1.09005 * 109.47151 * 56.04843 * 1 2 3 31 31 H 1.09003 * 109.47132 * 176.04302 * 1 2 3 32 32 H 1.08997 * 109.47167 * 183.95297 * 3 2 1 33 33 H 1.09003 * 109.47287 * 303.95556 * 3 2 1 34 34 H 1.08999 * 109.46909 * 63.95552 * 3 2 1 35 35 H 1.09001 * 109.47434 * 306.05182 * 4 2 1 36 36 H 1.08997 * 109.47503 * 186.04870 * 4 2 1 37 37 H 1.09002 * 109.47197 * 60.00592 * 5 4 2 38 38 H 1.08993 * 109.47380 * 299.99925 * 5 4 2 39 39 H 1.09002 * 109.46563 * 60.00323 * 6 5 4 40 40 H 1.09001 * 109.46872 * 300.00032 * 6 5 4 41 41 H 1.09004 * 109.46824 * 25.05982 * 8 7 6 42 42 H 1.08999 * 109.47519 * 145.06156 * 8 7 6 43 43 H 0.97000 * 120.00486 * 180.02562 * 12 11 9 44 44 H 1.08006 * 120.26198 * 0.02562 * 21 20 19 45 45 H 1.08004 * 119.21145 * 180.02562 * 22 21 20 46 46 H 1.07998 * 119.07981 * 180.25708 * 23 22 21 47 47 H 1.07998 * 120.22346 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47350 * 274.93574 * 28 27 26 49 49 H 1.09002 * 109.46974 * 34.92608 * 28 27 26 50 50 H 1.08990 * 109.47108 * 154.93195 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1803 -3.0405 2.1549 7 7 1.8322 -4.4545 1.9943 8 6 0.5759 -4.9668 2.5468 9 6 0.8295 -5.5541 3.9113 10 1 1.8088 -5.4748 4.3597 11 6 -0.1885 -6.1928 4.5870 12 7 -1.3811 -6.2891 4.0411 13 14 0.1260 -6.9214 6.2781 14 1 0.5549 -5.8462 7.2083 15 1 -1.1206 -7.5475 6.7870 16 1 1.1938 -7.9491 6.1835 17 6 2.6679 -5.2840 1.3386 18 8 3.7534 -4.8817 0.9621 19 6 2.2701 -6.6691 1.0791 20 6 2.6558 -7.8041 1.8043 21 6 3.4621 -8.0698 2.9183 22 6 3.6042 -9.3520 3.3513 23 6 2.9655 -10.4140 2.7112 24 6 2.1708 -10.2232 1.6264 25 6 1.9792 -8.9198 1.1260 26 7 1.2985 -8.3858 0.1271 27 7 1.4502 -7.1109 0.0855 28 6 0.8202 -6.2396 -0.9096 29 1 -0.3633 0.4513 0.9232 30 1 -0.3634 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3433 -0.0708 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6610 1.1757 37 1 2.0659 -2.6214 0.0451 38 1 0.5472 -2.3475 0.9323 39 1 1.7462 -2.6618 3.0802 40 1 3.2646 -2.9355 2.1924 41 1 -0.1435 -4.1520 2.6300 42 1 0.1768 -5.7379 1.8878 43 1 -2.0975 -6.7381 4.5166 44 1 3.9663 -7.2634 3.4301 45 1 4.2266 -9.5521 4.2109 46 1 3.1031 -11.4154 3.0915 47 1 1.6883 -11.0644 1.1512 48 1 1.4357 -6.2104 -1.8087 49 1 -0.1678 -6.6272 -1.1583 50 1 0.7238 -5.2333 -0.5023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355323701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:20 Heat of formation + Delta-G solvation = 71.920381 kcal Electronic energy + Delta-G solvation = -31290.305853 eV Core-core repulsion = 27319.607916 eV Total energy + Delta-G solvation = -3970.697938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.94464 -39.10307 -37.66077 -37.18876 -35.34394 -33.01656 -32.40455 -31.78470 -31.18176 -29.03643 -27.70725 -27.47690 -27.16088 -26.00452 -23.53810 -23.09163 -22.51308 -21.81768 -21.02685 -20.57489 -18.45523 -17.15133 -17.00030 -16.56437 -16.28794 -15.75231 -15.65952 -15.51381 -15.08878 -14.87012 -14.57397 -14.20439 -14.01038 -13.82380 -13.63563 -13.36797 -12.91530 -12.74070 -12.70832 -12.50690 -12.35150 -12.23326 -11.88241 -11.74204 -11.69097 -11.40150 -11.34347 -11.28280 -11.26750 -11.23574 -10.98703 -10.76137 -10.40191 -10.17642 -9.87182 -9.78913 -9.62539 -9.45921 -8.56782 -8.44597 -8.12412 -7.95792 -7.16084 -6.19286 -4.25586 1.09112 2.20548 2.49607 2.94131 3.14685 3.26157 3.30779 3.35175 3.64747 3.97696 4.34185 4.37208 4.56557 4.87956 4.98003 5.05638 5.15873 5.17324 5.20479 5.23396 5.29618 5.40607 5.44990 5.48724 5.49816 5.53567 5.54890 5.66392 5.71308 5.72949 5.79466 5.87509 5.89147 6.00751 6.02689 6.14857 6.29519 6.42451 6.50654 6.56250 6.88570 6.93032 6.93917 6.95821 7.02683 7.06787 7.14634 7.35056 7.42823 7.73203 8.00225 8.02296 8.44111 8.60896 8.80844 9.42217 10.88400 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.004000 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.821268 B = 6999.098334 C = 8355.461783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.119 3.881 7 N -0.581 5.581 8 C 0.239 3.761 9 C -0.533 4.533 10 H 0.060 0.940 11 C 0.071 3.929 12 N -0.891 5.891 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.270 1.270 17 C 0.593 3.407 18 O -0.550 6.550 19 C 0.021 3.979 20 C -0.115 4.115 21 C -0.036 4.036 22 C -0.148 4.148 23 C -0.099 4.099 24 C -0.086 4.086 25 C 0.063 3.937 26 N -0.300 5.300 27 N -0.223 5.223 28 C 0.082 3.918 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 5.354 -6.714 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.169 4.169 6 C -0.005 4.005 7 N -0.311 5.311 8 C 0.120 3.880 9 C -0.572 4.572 10 H 0.079 0.921 11 C -0.132 4.132 12 N -0.529 5.529 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.195 1.195 17 C 0.377 3.623 18 O -0.428 6.428 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.056 4.056 22 C -0.167 4.167 23 C -0.121 4.121 24 C -0.107 4.107 25 C -0.082 4.082 26 N -0.136 5.136 27 N -0.005 5.005 28 C -0.059 4.059 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.107 0.893 49 H 0.121 0.879 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.662 5.109 -8.347 10.449 hybrid contribution -0.086 0.222 2.479 2.490 sum 3.577 5.331 -5.868 8.698 Atomic orbital electron populations 1.22446 0.87382 1.02707 1.00217 1.61976 1.08109 1.13532 1.43627 1.22368 1.00762 0.88958 1.00257 1.22063 1.00220 0.93619 0.91059 1.21965 1.01600 0.93597 0.99721 1.21324 1.01073 0.80286 0.97835 1.48286 1.22545 1.07878 1.52392 1.19479 0.79113 0.94941 0.94465 1.21288 0.97327 1.37117 1.01436 0.92147 1.24851 0.94817 0.95327 0.98205 1.69889 1.01815 1.42818 1.38369 0.86630 0.77956 0.79738 0.83811 1.20173 1.21173 1.19472 1.16785 0.84169 0.82602 0.78721 1.90787 1.21828 1.76103 1.54115 1.20868 1.00641 0.94805 0.95224 1.19141 1.03397 0.90779 0.98986 1.20005 0.95622 0.96706 0.93264 1.20492 1.02690 0.92422 1.01113 1.20476 0.97385 0.98754 0.95492 1.19728 1.00730 0.92583 0.97619 1.20479 0.98288 0.95124 0.94296 1.73299 1.24965 0.91418 1.23912 1.45483 1.29640 1.04712 1.20715 1.22279 0.99791 0.93371 0.90440 0.95595 0.91704 0.90816 0.91394 0.91578 0.95779 0.94529 0.90598 0.91116 0.91556 0.90059 0.90396 0.94610 0.94644 0.92524 0.86322 0.86425 0.86165 0.85936 0.89306 0.87922 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 60.07 0.56 0.78 16 2 N -0.55 -6.39 5.02 -251.26 -1.26 -7.65 16 3 C 0.02 0.23 9.57 60.06 0.57 0.81 16 4 C 0.06 0.71 4.96 -3.83 -0.02 0.70 16 5 C -0.13 -1.84 5.46 -26.72 -0.15 -1.98 16 6 C 0.12 1.98 5.43 -4.04 -0.02 1.95 16 7 N -0.58 -11.63 2.47 -176.68 -0.44 -12.06 16 8 C 0.24 5.52 4.97 -5.19 -0.03 5.50 16 9 C -0.53 -13.76 9.35 -34.44 -0.32 -14.09 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 12 N -0.89 -24.78 13.29 55.43 0.74 -24.05 16 13 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 17 C 0.59 12.48 6.66 -12.96 -0.09 12.39 16 18 O -0.55 -12.31 16.66 5.16 0.09 -12.22 16 19 C 0.02 0.45 4.94 -81.94 -0.41 0.04 16 20 C -0.11 -2.48 6.42 -104.93 -0.67 -3.16 16 21 C -0.04 -0.71 10.06 -39.67 -0.40 -1.11 16 22 C -0.15 -2.53 9.92 -39.90 -0.40 -2.93 16 23 C -0.10 -1.58 9.89 -39.98 -0.40 -1.97 16 24 C -0.09 -1.51 10.08 -39.43 -0.40 -1.90 16 25 C 0.06 1.31 7.52 -83.14 -0.63 0.69 16 26 N -0.30 -6.13 11.88 33.21 0.39 -5.74 16 27 N -0.22 -4.32 3.47 -63.76 -0.22 -4.55 16 28 C 0.08 1.16 11.12 59.85 0.67 1.83 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 31 H 0.07 0.82 6.47 -51.93 -0.34 0.48 16 32 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.04 0.44 8.12 -51.93 -0.42 0.01 16 36 H 0.08 0.89 8.06 -51.93 -0.42 0.48 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 39 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.08 1.31 7.35 -51.93 -0.38 0.93 16 41 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 42 H 0.04 0.89 6.80 -51.93 -0.35 0.53 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 45 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.10 1.34 7.55 -51.93 -0.39 0.95 16 LS Contribution 415.23 15.07 6.26 6.26 Total: -1.00 -32.05 415.23 -9.77 -41.82 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.10 Total: 2.90 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.21 Total: -0.65 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.79 Total: -54.04 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.05 -9.77 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355323701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.739 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds