Wall clock time and date at job start Wed Apr 1 2020 04:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99802 * 2 1 4 4 C 1.46893 * 110.99980 * 123.95197 * 2 1 3 5 5 C 1.53005 * 109.46863 * 66.04626 * 4 2 1 6 6 C 1.53008 * 109.47004 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46714 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99933 * 269.99598 * 7 6 5 9 9 C 1.50702 * 109.47435 * 265.06473 * 8 7 6 10 10 H 1.08003 * 119.99586 * 4.99065 * 9 8 7 11 11 C 1.37872 * 120.00182 * 184.99984 * 9 8 7 12 12 N 1.31514 * 120.00114 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00248 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46676 * 59.99798 * 13 11 9 15 15 H 1.48493 * 109.46976 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47133 * 299.99978 * 13 11 9 17 17 C 1.34779 * 120.00318 * 90.00524 * 7 6 5 18 18 O 1.21735 * 119.99646 * 5.17179 * 17 7 6 19 19 C 1.46423 * 119.99852 * 185.17481 * 17 7 6 20 20 C 1.40107 * 126.85412 * 260.22861 * 19 17 7 21 21 C 1.40066 * 136.37412 * 0.02562 * 20 19 17 22 22 C 1.36073 * 119.47068 * 179.97438 * 21 20 19 23 23 C 1.39480 * 121.57263 * 0.03441 * 22 21 20 24 24 C 1.35825 * 121.83565 * 359.97438 * 23 22 21 25 25 C 1.40922 * 119.54569 * 359.97438 * 24 23 22 26 26 N 1.32147 * 135.41556 * 180.02562 * 25 24 23 27 27 N 1.28450 * 111.38993 * 179.97438 * 26 25 24 28 28 C 1.46502 * 124.15640 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.47240 * 296.04964 * 1 2 3 30 30 H 1.09005 * 109.47151 * 56.04843 * 1 2 3 31 31 H 1.09003 * 109.47132 * 176.04302 * 1 2 3 32 32 H 1.08997 * 109.47167 * 183.95297 * 3 2 1 33 33 H 1.09003 * 109.47287 * 303.95556 * 3 2 1 34 34 H 1.08999 * 109.46909 * 63.95552 * 3 2 1 35 35 H 1.09001 * 109.47434 * 306.05182 * 4 2 1 36 36 H 1.08997 * 109.47503 * 186.04870 * 4 2 1 37 37 H 1.09002 * 109.47197 * 60.00592 * 5 4 2 38 38 H 1.08993 * 109.47380 * 299.99925 * 5 4 2 39 39 H 1.09002 * 109.46563 * 60.00323 * 6 5 4 40 40 H 1.09001 * 109.46872 * 300.00032 * 6 5 4 41 41 H 1.09004 * 109.46824 * 25.05982 * 8 7 6 42 42 H 1.08999 * 109.47519 * 145.06156 * 8 7 6 43 43 H 0.97000 * 120.00486 * 180.02562 * 12 11 9 44 44 H 1.08006 * 120.26198 * 0.02562 * 21 20 19 45 45 H 1.08004 * 119.21145 * 180.02562 * 22 21 20 46 46 H 1.07998 * 119.07981 * 180.25708 * 23 22 21 47 47 H 1.07998 * 120.22346 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47350 * 274.93574 * 28 27 26 49 49 H 1.09002 * 109.46974 * 34.92608 * 28 27 26 50 50 H 1.08990 * 109.47108 * 154.93195 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9703 6 6 2.1803 -3.0405 2.1549 7 7 1.8322 -4.4545 1.9943 8 6 0.5759 -4.9668 2.5468 9 6 0.8295 -5.5541 3.9113 10 1 1.8088 -5.4748 4.3597 11 6 -0.1885 -6.1928 4.5870 12 7 -1.3811 -6.2891 4.0411 13 14 0.1260 -6.9214 6.2781 14 1 0.5549 -5.8462 7.2083 15 1 -1.1206 -7.5475 6.7870 16 1 1.1938 -7.9491 6.1835 17 6 2.6679 -5.2840 1.3386 18 8 3.7534 -4.8817 0.9621 19 6 2.2701 -6.6691 1.0791 20 6 2.6558 -7.8041 1.8043 21 6 3.4621 -8.0698 2.9183 22 6 3.6042 -9.3520 3.3513 23 6 2.9655 -10.4140 2.7112 24 6 2.1708 -10.2232 1.6264 25 6 1.9792 -8.9198 1.1260 26 7 1.2985 -8.3858 0.1271 27 7 1.4502 -7.1109 0.0855 28 6 0.8202 -6.2396 -0.9096 29 1 -0.3633 0.4513 0.9232 30 1 -0.3634 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3433 -0.0708 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6610 1.1757 37 1 2.0659 -2.6214 0.0451 38 1 0.5472 -2.3475 0.9323 39 1 1.7462 -2.6618 3.0802 40 1 3.2646 -2.9355 2.1924 41 1 -0.1435 -4.1520 2.6300 42 1 0.1768 -5.7379 1.8878 43 1 -2.0975 -6.7381 4.5166 44 1 3.9663 -7.2634 3.4301 45 1 4.2266 -9.5521 4.2109 46 1 3.1031 -11.4154 3.0915 47 1 1.6883 -11.0644 1.1512 48 1 1.4357 -6.2104 -1.8087 49 1 -0.1678 -6.6272 -1.1583 50 1 0.7238 -5.2333 -0.5023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355323701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:19 Heat of formation + Delta-G solvation = 52.898093 kcal Electronic energy + Delta-G solvation = -31291.130722 eV Core-core repulsion = 27319.607916 eV Total energy + Delta-G solvation = -3971.522806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.41884 -40.70823 -38.65656 -38.55952 -36.98503 -34.82200 -33.83739 -33.22087 -32.55543 -30.46808 -29.31982 -28.49071 -28.45539 -27.29473 -25.19708 -24.62819 -23.81116 -23.21188 -22.34470 -21.75398 -19.99311 -18.79986 -18.54683 -18.29345 -17.83918 -17.18419 -16.93708 -16.58363 -16.51149 -16.20500 -16.00193 -15.53016 -15.39130 -15.04761 -15.02154 -14.75371 -14.44506 -14.16375 -14.06324 -13.89745 -13.65831 -13.35535 -13.21273 -13.19863 -12.77573 -12.73370 -12.67603 -12.63586 -12.61896 -12.55020 -12.43447 -12.36907 -12.10383 -11.77672 -11.53269 -11.28164 -11.26643 -11.02555 -10.60887 -9.66790 -9.53917 -9.32106 -8.62721 -8.23148 -6.34918 -0.35183 0.76935 1.01373 1.38148 1.41602 1.43344 1.48043 1.63915 2.16103 2.40384 2.94162 3.02475 3.10383 3.17754 3.35117 3.88098 3.96405 4.04789 4.10050 4.14441 4.20216 4.24210 4.27281 4.37085 4.38369 4.42975 4.48710 4.51133 4.58504 4.65439 4.65738 4.74214 4.77031 4.80089 4.86794 5.01124 5.01980 5.06536 5.10882 5.15422 5.23516 5.46602 5.54309 5.58069 5.66931 5.70639 5.73845 6.00981 6.04788 6.08683 6.10854 6.28543 6.72514 6.93192 7.00444 7.36039 8.83117 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.004000 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.821268 B = 6999.098334 C = 8355.461783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.563 5.563 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.114 4.114 6 C 0.116 3.884 7 N -0.578 5.578 8 C 0.259 3.741 9 C -0.536 4.536 10 H 0.051 0.949 11 C 0.029 3.971 12 N -0.919 5.919 13 Si 0.942 3.058 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.268 1.268 17 C 0.598 3.402 18 O -0.569 6.569 19 C -0.013 4.013 20 C -0.139 4.139 21 C -0.077 4.077 22 C -0.133 4.133 23 C -0.094 4.094 24 C -0.095 4.095 25 C 0.036 3.964 26 N -0.308 5.308 27 N -0.221 5.221 28 C 0.071 3.929 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.017 0.983 43 H 0.265 0.735 44 H 0.111 0.889 45 H 0.150 0.850 46 H 0.166 0.834 47 H 0.149 0.851 48 H 0.116 0.884 49 H 0.120 0.880 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 4.842 -6.265 9.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.287 5.287 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.153 4.153 6 C -0.007 4.007 7 N -0.307 5.307 8 C 0.139 3.861 9 C -0.575 4.575 10 H 0.069 0.931 11 C -0.172 4.172 12 N -0.559 5.559 13 Si 0.768 3.232 14 H -0.192 1.192 15 H -0.209 1.209 16 H -0.193 1.193 17 C 0.383 3.617 18 O -0.449 6.449 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.108 4.108 26 N -0.145 5.145 27 N -0.004 5.004 28 C -0.068 4.068 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.129 0.871 45 H 0.168 0.832 46 H 0.184 0.816 47 H 0.167 0.833 48 H 0.134 0.866 49 H 0.138 0.862 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.962 4.630 -7.902 9.979 hybrid contribution -0.152 0.351 2.313 2.344 sum 3.810 4.981 -5.590 8.401 Atomic orbital electron populations 1.22459 0.86902 1.02382 1.00982 1.61964 1.08709 1.14873 1.43196 1.22423 1.01059 0.87751 1.01085 1.21957 1.00575 0.92163 0.91682 1.21778 1.01028 0.94720 0.97797 1.21515 1.01175 0.78797 0.99206 1.48213 1.21473 1.09102 1.51882 1.19053 0.79999 0.94001 0.93090 1.21475 0.96738 1.36858 1.02380 0.93087 1.25508 0.94658 0.95770 1.01250 1.69982 1.02461 1.43799 1.39610 0.85819 0.77780 0.79250 0.80383 1.19232 1.20910 1.19323 1.16781 0.83826 0.82698 0.78357 1.90754 1.22493 1.76585 1.55076 1.20948 1.02423 0.94833 0.96709 1.19565 1.04050 0.91383 0.99800 1.20181 0.97342 0.98087 0.94119 1.20991 1.01519 0.91536 1.01199 1.20993 0.95721 1.00483 0.94397 1.20217 1.01067 0.92101 0.98155 1.21063 0.98749 0.96359 0.94626 1.73225 1.25184 0.91961 1.24156 1.45845 1.29035 1.04765 1.20783 1.22642 1.01063 0.92666 0.90417 0.95454 0.90184 0.91836 0.90980 0.90299 0.95284 0.94091 0.90146 0.92265 0.91854 0.89762 0.90477 0.95185 0.96472 0.92618 0.87128 0.83221 0.81608 0.83301 0.86597 0.86192 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.32 127.69 1.19 1.61 16 2 N -0.56 -12.46 5.02 -948.84 -4.76 -17.22 16 3 C 0.02 0.42 9.57 127.69 1.22 1.64 16 4 C 0.06 1.53 4.96 86.31 0.43 1.96 16 5 C -0.11 -3.25 5.46 30.60 0.17 -3.09 16 6 C 0.12 3.92 5.43 86.38 0.47 4.39 16 7 N -0.58 -23.75 2.47 -831.11 -2.05 -25.81 16 8 C 0.26 12.27 4.97 85.63 0.43 12.70 16 9 C -0.54 -28.09 9.35 25.60 0.24 -27.85 16 10 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 11 C 0.03 1.53 5.46 84.65 0.46 1.99 16 12 N -0.92 -51.57 13.29 21.45 0.28 -51.29 16 13 Si 0.94 42.65 29.54 68.60 2.03 44.67 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 C 0.60 26.00 6.66 86.37 0.58 26.58 16 18 O -0.57 -26.22 16.66 -4.46 -0.07 -26.30 16 19 C -0.01 -0.55 4.94 41.05 0.20 -0.35 16 20 C -0.14 -6.17 6.42 -20.07 -0.13 -6.30 16 21 C -0.08 -3.10 10.06 22.21 0.22 -2.87 16 22 C -0.13 -4.31 9.92 22.07 0.22 -4.10 16 23 C -0.09 -2.73 9.89 22.01 0.22 -2.51 16 24 C -0.09 -3.17 10.08 22.37 0.23 -2.94 16 25 C 0.04 1.51 7.52 42.07 0.32 1.83 16 26 N -0.31 -12.71 11.88 -48.86 -0.58 -13.29 16 27 N -0.22 -8.73 3.47 -355.63 -1.23 -9.97 16 28 C 0.07 2.03 11.12 127.77 1.42 3.45 16 29 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 1.34 8.12 -2.38 -0.02 1.32 16 31 H 0.06 1.39 6.47 -2.39 -0.02 1.37 16 32 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 33 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 34 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.04 0.93 8.12 -2.39 -0.02 0.92 16 36 H 0.08 1.82 8.06 -2.39 -0.02 1.81 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.84 6.55 -2.39 -0.02 1.82 16 39 H 0.08 2.78 8.07 -2.39 -0.02 2.77 16 40 H 0.08 2.63 7.35 -2.39 -0.02 2.61 16 41 H 0.03 1.45 8.03 -2.39 -0.02 1.44 16 42 H 0.02 0.89 6.80 -2.39 -0.02 0.87 16 43 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 46 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 47 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 48 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 49 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 50 H 0.09 2.69 7.55 -2.39 -0.02 2.67 16 Total: -1.00 -69.76 415.23 2.40 -67.36 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.92 Total: 25.69 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 7.88 Total: 6.14 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -8.34 Total: -117.57 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.07 Total: -26.30 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -69.76 2.40 -67.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355323701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.256 kcal (2) G-P(sol) polarization free energy of solvation -69.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds