Wall clock time and date at job start Wed Apr 1 2020 03:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46787 * 2 1 4 4 C 1.36036 * 126.35074 * 269.98378 * 3 2 1 5 5 C 1.50700 * 124.94888 * 0.02562 * 4 3 2 6 6 C 1.53006 * 109.46785 * 90.00017 * 5 4 3 7 7 N 1.46507 * 109.46691 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99468 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00451 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99563 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47390 * 319.99705 * 10 8 7 12 12 N 1.46909 * 109.46814 * 200.00536 * 10 8 7 13 13 C 1.52995 * 109.47400 * 80.00450 * 10 8 7 14 14 C 1.52999 * 109.47246 * 184.99839 * 13 10 8 15 15 C 1.50703 * 109.47015 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99645 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00079 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00108 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47127 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47444 * 119.99909 * 19 17 15 22 22 H 1.48507 * 109.47262 * 239.99722 * 19 17 15 23 23 N 1.30106 * 110.10195 * 180.02562 * 4 3 2 24 24 C 1.35787 * 109.64359 * 359.97438 * 23 4 3 25 25 C 1.39734 * 133.60143 * 179.97438 * 24 23 4 26 26 C 1.36605 * 119.88806 * 180.02562 * 25 24 23 27 27 C 1.38776 * 120.66622 * 359.97438 * 26 25 24 28 28 C 1.37851 * 120.45485 * 0.03810 * 27 26 25 29 29 C 1.38058 * 126.34607 * 90.02555 * 3 2 1 30 30 H 1.08994 * 109.47216 * 59.99900 * 1 2 3 31 31 H 1.09003 * 109.46577 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46734 * 299.99857 * 1 2 3 33 33 H 1.08997 * 109.47000 * 240.00547 * 2 1 3 34 34 H 1.08994 * 109.47216 * 120.00100 * 2 1 3 35 35 H 1.08993 * 109.47363 * 209.99975 * 5 4 3 36 36 H 1.09003 * 109.47256 * 330.00646 * 5 4 3 37 37 H 1.08993 * 109.47136 * 300.00097 * 6 5 4 38 38 H 1.09003 * 109.46709 * 60.00294 * 6 5 4 39 39 H 0.96990 * 120.00082 * 0.02562 * 7 6 5 40 40 H 1.00903 * 110.99485 * 176.04834 * 12 10 8 41 41 H 1.00897 * 110.99767 * 300.00080 * 12 10 8 42 42 H 1.09004 * 109.47093 * 305.00158 * 13 10 8 43 43 H 1.08998 * 109.46859 * 64.99631 * 13 10 8 44 44 H 1.08997 * 109.47220 * 299.99482 * 14 13 10 45 45 H 1.08993 * 109.46962 * 60.00328 * 14 13 10 46 46 H 0.96991 * 120.00537 * 180.02562 * 18 17 15 47 47 H 1.08009 * 120.05649 * 0.29744 * 25 24 23 48 48 H 1.08001 * 119.66343 * 179.97438 * 26 25 24 49 49 H 1.08002 * 119.77372 * 180.02562 * 27 26 25 50 50 H 1.08000 * 120.15788 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2874 2.1414 -1.0956 5 6 2.1262 1.6859 -2.5231 6 6 0.7117 2.0130 -3.0061 7 7 0.5552 1.5708 -4.3940 8 6 -0.6173 1.7561 -5.0322 9 8 -1.5427 2.2895 -4.4577 10 6 -0.7785 1.3007 -6.4596 11 1 0.1334 1.5185 -7.0157 12 7 -1.9084 2.0097 -7.0752 13 6 -1.0454 -0.2055 -6.4874 14 6 -1.0851 -0.6898 -7.9382 15 6 -1.3487 -2.1734 -7.9655 16 1 -1.4747 -2.7165 -7.0404 17 6 -1.4278 -2.8374 -9.1711 18 7 -1.2738 -2.1761 -10.2974 19 14 -1.7537 -4.6764 -9.2050 20 1 -1.8878 -5.1811 -7.8147 21 1 -3.0091 -4.9431 -9.9520 22 1 -0.6228 -5.3674 -9.8750 23 7 2.7041 3.3189 -0.7316 24 6 2.7303 3.3949 0.6239 25 6 3.0865 4.4009 1.5260 26 6 3.0047 4.1703 2.8699 27 6 2.5697 2.9440 3.3524 28 6 2.2133 1.9369 2.4812 29 6 2.2915 2.1525 1.1120 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.8529 2.1993 -3.1526 36 1 2.2904 0.6099 -2.5819 37 1 -0.0150 1.4996 -2.3766 38 1 0.5475 3.0890 -2.9473 39 1 1.2952 1.1439 -4.8534 40 1 -1.9973 1.7697 -8.0512 41 1 -2.7662 1.8239 -6.5775 42 1 -0.2505 -0.7253 -5.9524 43 1 -2.0021 -0.4138 -6.0084 44 1 -1.8801 -0.1702 -8.4730 45 1 -0.1284 -0.4815 -8.4170 46 1 -1.3298 -2.6432 -11.1457 47 1 3.4218 5.3607 1.1612 48 1 3.2813 4.9503 3.5639 49 1 2.5101 2.7775 4.4179 50 1 1.8758 0.9843 2.8620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424151646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:47 Heat of formation + Delta-G solvation = 15.747217 kcal Electronic energy + Delta-G solvation = -29117.192816 eV Core-core repulsion = 25144.059027 eV Total energy + Delta-G solvation = -3973.133789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.54727 -39.66744 -37.91129 -35.85958 -35.36056 -35.16947 -32.88650 -32.06545 -31.44552 -29.92004 -29.72646 -28.78875 -26.63968 -24.71344 -24.28969 -23.19633 -22.42120 -22.01640 -20.80532 -20.25904 -19.66113 -17.78400 -17.49390 -17.32222 -16.44809 -16.23925 -15.72945 -15.56478 -15.46073 -14.85757 -14.72569 -14.57994 -14.48518 -14.11086 -14.05655 -13.93320 -13.41560 -13.33743 -13.01961 -12.97876 -12.75123 -12.42818 -12.41422 -12.20063 -11.96685 -11.75230 -11.68653 -11.65474 -11.47794 -11.12549 -10.97304 -10.70438 -10.68860 -10.20436 -10.03539 -9.96469 -9.33372 -9.23933 -9.06461 -8.61230 -8.48047 -8.38458 -8.20883 -6.12246 -4.15536 0.63126 1.22242 2.19143 2.41619 2.89514 3.13413 3.22752 3.31071 3.34135 3.59311 3.84934 4.09740 4.15976 4.35720 4.48377 4.57148 4.59584 4.65481 4.69182 4.71663 4.98304 5.02982 5.10851 5.13779 5.14591 5.17499 5.21292 5.24101 5.33412 5.46629 5.51323 5.55266 5.65058 5.72783 5.81276 5.87741 6.13157 6.20895 6.23872 6.24149 6.39765 6.47693 6.57558 6.79139 6.83197 7.39094 7.48250 7.57335 7.60793 7.65198 7.84741 7.88898 8.27044 8.41440 8.90660 9.49560 10.98633 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.001909 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.725571 B =14661.487085 C =15589.887728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.104 3.896 3 N -0.484 5.484 4 C 0.291 3.709 5 C -0.056 4.056 6 C 0.127 3.873 7 N -0.735 5.735 8 C 0.527 3.473 9 O -0.536 6.536 10 C 0.075 3.925 11 H 0.098 0.902 12 N -0.831 5.831 13 C -0.137 4.137 14 C 0.023 3.977 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.487 5.487 24 C 0.046 3.954 25 C -0.063 4.063 26 C -0.131 4.131 27 C -0.104 4.104 28 C -0.110 4.110 29 C 0.049 3.951 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.403 0.597 40 H 0.355 0.645 41 H 0.345 0.655 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.261 0.739 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.128 0.872 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 7.231 25.162 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 N -0.175 5.175 4 C 0.026 3.974 5 C -0.096 4.096 6 C 0.002 3.998 7 N -0.389 5.389 8 C 0.314 3.686 9 O -0.411 6.411 10 C -0.040 4.040 11 H 0.116 0.884 12 N -0.363 5.363 13 C -0.177 4.177 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.206 5.206 24 C -0.072 4.072 25 C -0.083 4.083 26 C -0.151 4.151 27 C -0.124 4.124 28 C -0.131 4.131 29 C -0.060 4.060 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.237 0.763 40 H 0.170 0.830 41 H 0.159 0.841 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.146 0.854 48 H 0.146 0.854 49 H 0.146 0.854 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.005 8.802 25.036 28.362 hybrid contribution -0.402 -3.001 0.077 3.029 sum 9.603 5.800 25.113 27.505 Atomic orbital electron populations 1.22274 0.93774 1.03666 1.03599 1.21856 0.95932 0.79286 1.04710 1.45391 1.54101 1.13062 1.04912 1.23182 0.97105 0.86920 0.90229 1.20376 0.99101 1.02631 0.87471 1.21198 0.94351 1.01196 0.83022 1.45923 1.15754 1.63710 1.13550 1.20914 0.81525 0.77276 0.88918 1.90647 1.39945 1.42324 1.68223 1.21477 0.97352 0.94375 0.90800 0.88449 1.58738 1.07161 1.62651 1.07743 1.22380 1.01137 0.91689 1.02452 1.19113 0.97437 0.96144 0.88696 1.21208 1.49216 0.93419 0.92355 0.92698 1.25015 0.95220 0.98392 0.95717 1.69952 1.49893 1.35864 0.97379 0.86536 0.77936 0.85450 0.78076 1.19804 1.20934 1.20947 1.70437 1.21800 1.17484 1.10896 1.19078 1.04219 0.93751 0.90164 1.20042 0.99031 0.97643 0.91567 1.20640 1.02004 0.97645 0.94806 1.20876 0.99377 0.92937 0.99216 1.19942 1.04083 1.00246 0.88800 1.18886 1.04829 0.92917 0.89391 0.91232 0.90104 0.91842 0.88521 0.89085 0.87143 0.88874 0.91485 0.90634 0.76250 0.82994 0.84147 0.92554 0.92716 0.96361 0.96266 0.92905 0.85366 0.85403 0.85373 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.10 0.67 6.65 -4.04 -0.03 0.64 16 3 N -0.48 -4.63 2.81 -111.15 -0.31 -4.94 16 4 C 0.29 3.14 7.11 -154.83 -1.10 2.04 16 5 C -0.06 -0.47 5.62 -27.88 -0.16 -0.63 16 6 C 0.13 1.38 5.66 -4.03 -0.02 1.36 16 7 N -0.74 -8.63 5.56 -60.29 -0.33 -8.97 16 8 C 0.53 8.37 7.08 -10.98 -0.08 8.29 16 9 O -0.54 -10.35 16.25 5.56 0.09 -10.26 16 10 C 0.08 1.23 3.21 -68.86 -0.22 1.01 16 11 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 12 N -0.83 -14.12 8.94 -5.65 -0.05 -14.17 16 13 C -0.14 -2.56 4.78 -26.73 -0.13 -2.69 16 14 C 0.02 0.55 4.74 -27.88 -0.13 0.41 16 15 C -0.52 -14.01 9.11 -34.44 -0.31 -14.33 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 N -0.49 -6.39 11.27 -8.24 -0.09 -6.48 16 24 C 0.05 0.57 7.23 -84.70 -0.61 -0.04 16 25 C -0.06 -0.63 10.05 -39.61 -0.40 -1.03 16 26 C -0.13 -1.01 9.96 -39.97 -0.40 -1.41 16 27 C -0.10 -0.76 10.03 -39.52 -0.40 -1.16 16 28 C -0.11 -0.93 10.05 -39.50 -0.40 -1.32 16 29 C 0.05 0.52 6.88 -83.98 -0.58 -0.06 16 30 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.49 6.99 -51.93 -0.36 0.12 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.56 7.01 -51.93 -0.36 0.20 16 37 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 3.70 8.47 -40.82 -0.35 3.36 16 40 H 0.35 6.03 7.55 -39.29 -0.30 5.73 16 41 H 0.35 5.96 8.58 -39.29 -0.34 5.62 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 48 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 49 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 50 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 411.74 15.07 6.20 6.20 Total: -1.00 -34.41 411.74 -11.17 -45.58 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.72 Total: 10.28 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -4.68 Total: -8.24 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.05 Total: -59.40 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.41 -11.17 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.327 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds