Wall clock time and date at job start Wed Apr 1 2020 03:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99935 * 2 1 4 4 C 1.50700 * 109.46929 * 180.02562 * 3 2 1 5 5 N 1.30297 * 126.34539 * 90.03134 * 4 3 2 6 6 N 1.28532 * 110.04981 * 179.97438 * 5 4 3 7 7 C 1.31220 * 109.86202 * 359.97438 * 6 5 4 8 8 N 1.38581 * 126.47055 * 180.02562 * 7 6 5 9 9 C 1.46899 * 111.00071 * 306.14455 * 8 7 6 10 10 C 1.46904 * 111.00203 * 70.10085 * 8 7 6 11 11 H 1.08996 * 109.47101 * 55.00092 * 10 8 7 12 12 C 1.53001 * 109.47126 * 294.99744 * 10 8 7 13 13 C 1.50699 * 109.47074 * 175.00103 * 10 8 7 14 14 H 1.07994 * 120.00233 * 93.99841 * 13 10 8 15 15 C 1.37884 * 119.99555 * 273.99992 * 13 10 8 16 16 N 1.31515 * 119.99503 * 185.61569 * 15 13 10 17 17 Si 1.86794 * 120.00406 * 5.61081 * 15 13 10 18 18 H 1.48499 * 109.46892 * 84.82405 * 17 15 13 19 19 H 1.48498 * 109.47351 * 204.82879 * 17 15 13 20 20 H 1.48507 * 109.46940 * 324.82819 * 17 15 13 21 21 N 1.36455 * 107.05375 * 359.73762 * 7 6 5 22 22 C 1.46493 * 127.13860 * 180.26545 * 21 7 6 23 23 C 1.53005 * 109.47218 * 272.83091 * 22 21 7 24 24 C 1.50698 * 109.47195 * 184.87732 * 23 22 21 25 25 C 1.38230 * 119.99758 * 269.72206 * 24 23 22 26 26 C 1.38245 * 119.99751 * 179.76424 * 25 24 23 27 27 C 1.38230 * 119.99939 * 0.49360 * 26 25 24 28 28 C 1.38241 * 119.99656 * 359.78328 * 27 26 25 29 29 C 1.38227 * 120.00157 * 359.96014 * 28 27 26 30 30 H 1.09004 * 109.47148 * 299.99398 * 1 2 3 31 31 H 1.08997 * 109.47268 * 59.99250 * 1 2 3 32 32 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46819 * 60.00324 * 3 2 1 34 34 H 1.09005 * 109.47208 * 300.00411 * 3 2 1 35 35 H 1.09004 * 109.47069 * 54.07890 * 9 8 7 36 36 H 1.09001 * 109.46993 * 174.07541 * 9 8 7 37 37 H 1.09002 * 109.47293 * 294.07703 * 9 8 7 38 38 H 1.08992 * 109.47465 * 185.26670 * 12 10 8 39 39 H 1.09001 * 109.46817 * 305.26877 * 12 10 8 40 40 H 1.09006 * 109.47002 * 65.26568 * 12 10 8 41 41 H 0.97002 * 119.99635 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.47005 * 32.82384 * 22 21 7 43 43 H 1.08995 * 109.47200 * 152.83138 * 22 21 7 44 44 H 1.09000 * 109.46506 * 304.87761 * 23 22 21 45 45 H 1.09000 * 109.46749 * 64.87415 * 23 22 21 46 46 H 1.08000 * 120.00770 * 0.02562 * 25 24 23 47 47 H 1.07999 * 119.99593 * 180.25217 * 26 25 24 48 48 H 1.07992 * 120.00477 * 179.76563 * 27 26 25 49 49 H 1.08002 * 119.99677 * 179.97438 * 28 27 26 50 50 H 1.08004 * 119.99769 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2819 1.1262 -1.0504 6 7 5.5119 1.0291 -0.6903 7 6 5.5938 1.0226 0.6193 8 7 6.7541 0.9314 1.3716 9 6 7.5459 -0.2416 0.9781 10 6 7.5485 2.1626 1.2655 11 1 6.9328 3.0175 1.5449 12 6 8.0347 2.3332 -0.1752 13 6 8.7359 2.0754 2.1893 14 1 9.6849 1.7191 1.8168 15 6 8.6107 2.4506 3.5102 16 7 9.6703 2.4800 4.2886 17 14 6.9361 2.9171 4.1939 18 1 6.2154 1.6900 4.6183 19 1 7.1116 3.8171 5.3620 20 1 6.1501 3.6150 3.1449 21 7 4.3214 1.1291 1.1004 22 6 3.9074 1.1695 2.5050 23 6 3.7136 -0.2578 3.0210 24 6 3.1733 -0.2147 4.4271 25 6 4.0429 -0.1972 5.5014 26 6 3.5472 -0.1528 6.7912 27 6 2.1819 -0.1361 7.0067 28 6 1.3123 -0.1594 5.9324 29 6 1.8080 -0.1985 4.6426 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 7.7280 -0.2133 -0.0963 36 1 8.4982 -0.2317 1.5083 37 1 6.9991 -1.1503 1.2301 38 1 8.7002 3.1943 -0.2345 39 1 8.5715 1.4369 -0.4860 40 1 7.1785 2.4899 -0.8314 41 1 9.5821 2.7436 5.2180 42 1 4.6756 1.6683 3.0960 43 1 2.9692 1.7176 2.5917 44 1 3.0093 -0.7844 2.3770 45 1 4.6708 -0.7792 3.0153 46 1 5.1096 -0.2140 5.3332 47 1 4.2267 -0.1350 7.6304 48 1 1.7946 -0.1052 8.0143 49 1 0.2456 -0.1468 6.1008 50 1 1.1285 -0.2171 3.8033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589642347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:42 Heat of formation + Delta-G solvation = 76.209963 kcal Electronic energy + Delta-G solvation = -31652.921117 eV Core-core repulsion = 27682.409190 eV Total energy + Delta-G solvation = -3970.511927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.61941 -39.39091 -38.09833 -37.27094 -35.66209 -32.71527 -32.62238 -31.00000 -30.96330 -29.61505 -28.54843 -27.42888 -25.81134 -25.61086 -24.97758 -24.31936 -22.66639 -21.42172 -21.10703 -20.50104 -19.38440 -17.21292 -17.04683 -16.80134 -16.67054 -16.08465 -15.72630 -15.57603 -15.43613 -15.21852 -14.94930 -14.51225 -13.84777 -13.75942 -13.48367 -13.40170 -13.16490 -13.13082 -12.83790 -12.69085 -12.63045 -12.28042 -12.03238 -11.71924 -11.61843 -11.47450 -11.30697 -11.21011 -11.02283 -10.92495 -10.84241 -10.66177 -10.34957 -10.02927 -9.91190 -9.83209 -9.71973 -9.19160 -9.00808 -8.84805 -8.77018 -8.60077 -7.79996 -6.25242 -4.29024 1.21292 1.31659 1.95442 2.57235 3.09931 3.18692 3.23370 3.26719 3.67142 3.77839 4.28526 4.40300 4.50379 4.60644 4.71346 4.77965 4.82830 4.91059 5.02210 5.04462 5.06484 5.07972 5.15257 5.26602 5.28404 5.39541 5.41632 5.45486 5.64187 5.72917 5.83125 5.91217 5.98643 6.05346 6.14981 6.21738 6.31725 6.35444 6.41871 6.44321 6.56714 6.57642 6.59291 6.74691 6.79761 6.90294 6.91878 7.07820 7.18024 7.46084 7.75514 8.07171 8.41950 8.80007 9.13060 9.37914 10.85258 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007763 B = 0.005780 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3605.999676 B = 4843.509854 C = 7792.991787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.159 3.841 4 C 0.149 3.851 5 N -0.270 5.270 6 N -0.319 5.319 7 C 0.380 3.620 8 N -0.473 5.473 9 C 0.047 3.953 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.164 4.164 13 C -0.498 4.498 14 H 0.080 0.920 15 C 0.086 3.914 16 N -0.886 5.886 17 Si 0.884 3.116 18 H -0.262 1.262 19 H -0.295 1.295 20 H -0.272 1.272 21 N -0.462 5.462 22 C 0.116 3.884 23 C -0.092 4.092 24 C -0.080 4.080 25 C -0.108 4.108 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.115 4.115 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.267 0.733 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.778 -4.533 1.833 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.080 3.920 4 C -0.118 4.118 5 N -0.113 5.113 6 N -0.163 5.163 7 C 0.025 3.975 8 N -0.201 5.201 9 C -0.100 4.100 10 C 0.072 3.928 11 H 0.066 0.934 12 C -0.223 4.223 13 C -0.537 4.537 14 H 0.098 0.902 15 C -0.119 4.119 16 N -0.522 5.522 17 Si 0.713 3.287 18 H -0.188 1.188 19 H -0.221 1.221 20 H -0.198 1.198 21 N -0.156 5.156 22 C -0.007 4.007 23 C -0.130 4.130 24 C -0.081 4.081 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.133 4.133 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.147 0.853 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.309 -4.737 1.084 19.911 hybrid contribution -1.195 0.614 1.268 1.848 sum -20.504 -4.123 2.352 21.047 Atomic orbital electron populations 1.22775 0.80427 1.03087 1.00175 1.87992 1.19884 1.26729 1.95444 1.20380 0.83854 0.85632 1.02098 1.23934 0.94766 1.09731 0.83329 1.73917 0.97236 1.15990 1.24165 1.74743 1.10893 1.21759 1.08920 1.23327 0.86514 0.99091 0.88548 1.60361 1.02480 1.08054 1.49235 1.22156 0.98800 0.89526 0.99484 1.20086 0.92632 0.85885 0.94234 0.93417 1.22338 1.00711 1.01384 0.97909 1.20843 0.94700 1.44285 0.93829 0.90221 1.25055 0.96295 0.93777 0.96788 1.69911 1.28951 1.46523 1.06829 0.86823 0.85219 0.78777 0.77903 1.18789 1.22147 1.19761 1.46401 1.06921 1.54407 1.07827 1.21895 1.02067 0.98380 0.78358 1.20900 1.03155 0.96154 0.92804 1.19702 0.93518 1.00291 0.94584 1.21330 1.00448 0.98516 0.92279 1.21204 0.95523 0.99850 0.97031 1.21154 0.93548 1.00582 0.98877 1.21092 0.99523 1.00847 0.92652 1.21033 0.94565 1.00630 0.97067 0.93951 0.93640 0.89328 0.91749 0.89749 0.94442 0.88573 0.93623 0.92879 0.93061 0.93384 0.92351 0.88094 0.89522 0.89867 0.89391 0.85307 0.85911 0.86220 0.86205 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.71 10.69 -35.23 -0.38 -5.08 16 3 C 0.16 1.94 6.30 36.01 0.23 2.17 16 4 C 0.15 2.55 7.70 -154.01 -1.19 1.36 16 5 N -0.27 -5.41 12.18 32.99 0.40 -5.01 16 6 N -0.32 -6.84 9.81 30.32 0.30 -6.54 16 7 C 0.38 7.83 6.21 -318.87 -1.98 5.85 16 8 N -0.47 -10.12 4.37 -176.08 -0.77 -10.89 16 9 C 0.05 0.94 8.69 60.06 0.52 1.47 16 10 C 0.17 4.06 1.69 -68.86 -0.12 3.94 16 11 H 0.05 1.18 5.66 -51.93 -0.29 0.89 16 12 C -0.16 -3.57 8.39 37.16 0.31 -3.26 16 13 C -0.50 -13.04 7.57 -34.44 -0.26 -13.31 16 14 H 0.08 2.25 8.04 -52.49 -0.42 1.83 16 15 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 16 N -0.89 -25.36 13.96 55.43 0.77 -24.58 16 17 Si 0.88 20.60 25.29 -169.99 -4.30 16.30 16 18 H -0.26 -5.69 6.43 56.52 0.36 -5.33 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.29 6.12 56.52 0.35 -5.95 16 21 N -0.46 -8.29 2.81 -114.09 -0.32 -8.61 16 22 C 0.12 1.80 6.03 -4.04 -0.02 1.78 16 23 C -0.09 -1.29 5.67 -27.88 -0.16 -1.45 16 24 C -0.08 -1.05 5.13 -104.63 -0.54 -1.59 16 25 C -0.11 -1.49 9.70 -39.58 -0.38 -1.88 16 26 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 28 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 29 C -0.11 -1.26 9.70 -39.59 -0.38 -1.65 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.63 7.21 -51.93 -0.37 0.26 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.74 6.45 -51.93 -0.33 0.40 16 36 H 0.10 2.00 6.80 -51.93 -0.35 1.65 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.08 6.33 -51.93 -0.33 0.75 16 40 H 0.05 1.04 6.25 -51.93 -0.32 0.72 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.10 1.82 5.45 -51.93 -0.28 1.53 16 43 H 0.09 1.10 7.17 -51.93 -0.37 0.73 16 44 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 45 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 46 H 0.13 1.94 7.74 -52.49 -0.41 1.53 16 47 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 50 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 400.84 15.07 6.04 6.04 Total: -1.00 -31.30 400.84 -10.19 -41.50 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.79 Total: 4.99 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -4.15 Total: -8.11 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.38 Total: -55.63 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.38 Total: -5.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.30 Total: 16.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.30 -10.19 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589642347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.705 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds