Wall clock time and date at job start Wed Apr 1 2020 03:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99935 * 2 1 4 4 C 1.50700 * 109.46929 * 180.02562 * 3 2 1 5 5 N 1.30297 * 126.34539 * 90.03134 * 4 3 2 6 6 N 1.28532 * 110.04981 * 179.97438 * 5 4 3 7 7 C 1.31220 * 109.86202 * 359.97438 * 6 5 4 8 8 N 1.38581 * 126.47055 * 180.02562 * 7 6 5 9 9 C 1.46899 * 111.00071 * 306.14455 * 8 7 6 10 10 C 1.46904 * 111.00203 * 70.10085 * 8 7 6 11 11 H 1.08996 * 109.47101 * 55.00092 * 10 8 7 12 12 C 1.53001 * 109.47126 * 294.99744 * 10 8 7 13 13 C 1.50699 * 109.47074 * 175.00103 * 10 8 7 14 14 H 1.07994 * 120.00233 * 93.99841 * 13 10 8 15 15 C 1.37884 * 119.99555 * 273.99992 * 13 10 8 16 16 N 1.31515 * 119.99503 * 185.61569 * 15 13 10 17 17 Si 1.86794 * 120.00406 * 5.61081 * 15 13 10 18 18 H 1.48499 * 109.46892 * 84.82405 * 17 15 13 19 19 H 1.48498 * 109.47351 * 204.82879 * 17 15 13 20 20 H 1.48507 * 109.46940 * 324.82819 * 17 15 13 21 21 N 1.36455 * 107.05375 * 359.73762 * 7 6 5 22 22 C 1.46493 * 127.13860 * 180.26545 * 21 7 6 23 23 C 1.53005 * 109.47218 * 272.83091 * 22 21 7 24 24 C 1.50698 * 109.47195 * 184.87732 * 23 22 21 25 25 C 1.38230 * 119.99758 * 269.72206 * 24 23 22 26 26 C 1.38245 * 119.99751 * 179.76424 * 25 24 23 27 27 C 1.38230 * 119.99939 * 0.49360 * 26 25 24 28 28 C 1.38241 * 119.99656 * 359.78328 * 27 26 25 29 29 C 1.38227 * 120.00157 * 359.96014 * 28 27 26 30 30 H 1.09004 * 109.47148 * 299.99398 * 1 2 3 31 31 H 1.08997 * 109.47268 * 59.99250 * 1 2 3 32 32 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46819 * 60.00324 * 3 2 1 34 34 H 1.09005 * 109.47208 * 300.00411 * 3 2 1 35 35 H 1.09004 * 109.47069 * 54.07890 * 9 8 7 36 36 H 1.09001 * 109.46993 * 174.07541 * 9 8 7 37 37 H 1.09002 * 109.47293 * 294.07703 * 9 8 7 38 38 H 1.08992 * 109.47465 * 185.26670 * 12 10 8 39 39 H 1.09001 * 109.46817 * 305.26877 * 12 10 8 40 40 H 1.09006 * 109.47002 * 65.26568 * 12 10 8 41 41 H 0.97002 * 119.99635 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.47005 * 32.82384 * 22 21 7 43 43 H 1.08995 * 109.47200 * 152.83138 * 22 21 7 44 44 H 1.09000 * 109.46506 * 304.87761 * 23 22 21 45 45 H 1.09000 * 109.46749 * 64.87415 * 23 22 21 46 46 H 1.08000 * 120.00770 * 0.02562 * 25 24 23 47 47 H 1.07999 * 119.99593 * 180.25217 * 26 25 24 48 48 H 1.07992 * 120.00477 * 179.76563 * 27 26 25 49 49 H 1.08002 * 119.99677 * 179.97438 * 28 27 26 50 50 H 1.08004 * 119.99769 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2819 1.1262 -1.0504 6 7 5.5119 1.0291 -0.6903 7 6 5.5938 1.0226 0.6193 8 7 6.7541 0.9314 1.3716 9 6 7.5459 -0.2416 0.9781 10 6 7.5485 2.1626 1.2655 11 1 6.9328 3.0175 1.5449 12 6 8.0347 2.3332 -0.1752 13 6 8.7359 2.0754 2.1893 14 1 9.6849 1.7191 1.8168 15 6 8.6107 2.4506 3.5102 16 7 9.6703 2.4800 4.2886 17 14 6.9361 2.9171 4.1939 18 1 6.2154 1.6900 4.6183 19 1 7.1116 3.8171 5.3620 20 1 6.1501 3.6150 3.1449 21 7 4.3214 1.1291 1.1004 22 6 3.9074 1.1695 2.5050 23 6 3.7136 -0.2578 3.0210 24 6 3.1733 -0.2147 4.4271 25 6 4.0429 -0.1972 5.5014 26 6 3.5472 -0.1528 6.7912 27 6 2.1819 -0.1361 7.0067 28 6 1.3123 -0.1594 5.9324 29 6 1.8080 -0.1985 4.6426 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 7.7280 -0.2133 -0.0963 36 1 8.4982 -0.2317 1.5083 37 1 6.9991 -1.1503 1.2301 38 1 8.7002 3.1943 -0.2345 39 1 8.5715 1.4369 -0.4860 40 1 7.1785 2.4899 -0.8314 41 1 9.5821 2.7436 5.2180 42 1 4.6756 1.6683 3.0960 43 1 2.9692 1.7176 2.5917 44 1 3.0093 -0.7844 2.3770 45 1 4.6708 -0.7792 3.0153 46 1 5.1096 -0.2140 5.3332 47 1 4.2267 -0.1350 7.6304 48 1 1.7946 -0.1052 8.0143 49 1 0.2456 -0.1468 6.1008 50 1 1.1285 -0.2171 3.8033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589642347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:41 Heat of formation + Delta-G solvation = 59.291035 kcal Electronic energy + Delta-G solvation = -31653.654777 eV Core-core repulsion = 27682.409190 eV Total energy + Delta-G solvation = -3971.245587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.07728 -40.27085 -39.23799 -38.70485 -36.89843 -34.71842 -33.73383 -32.46710 -31.81225 -31.22387 -29.66464 -28.48634 -27.51035 -27.00987 -26.33868 -25.47117 -23.52279 -22.98334 -22.17230 -21.77893 -21.07156 -19.12086 -18.33573 -17.86930 -17.60207 -17.34077 -16.94911 -16.80942 -16.43647 -16.25720 -16.21822 -15.93486 -15.46990 -15.08199 -14.98559 -14.49002 -14.44003 -14.26870 -14.06738 -14.00250 -13.61564 -13.43510 -13.37732 -13.22002 -12.96416 -12.86824 -12.69861 -12.52282 -12.40495 -12.27996 -12.08843 -11.93290 -11.87095 -11.76408 -11.48406 -11.30661 -11.12745 -10.86176 -10.72935 -10.15866 -9.85583 -9.68393 -9.50106 -8.35263 -6.43492 0.31577 0.46317 0.60863 1.20088 1.28655 1.33652 1.39495 1.65534 2.30893 2.70825 2.77152 2.87018 3.27285 3.42995 3.50956 3.72511 3.86624 3.89628 3.94578 4.05488 4.12215 4.15071 4.23928 4.29812 4.32276 4.39218 4.47133 4.57260 4.58268 4.59884 4.62356 4.72931 4.73690 4.80128 4.81811 4.88142 4.92641 4.99819 5.02345 5.09430 5.14260 5.17043 5.32316 5.49600 5.53549 5.59887 5.63106 5.66647 5.93059 6.08553 6.09253 6.20011 6.51647 6.68629 7.26899 7.64779 8.78465 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007763 B = 0.005780 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3605.999676 B = 4843.509854 C = 7792.991787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.159 3.841 4 C 0.171 3.829 5 N -0.305 5.305 6 N -0.339 5.339 7 C 0.359 3.641 8 N -0.474 5.474 9 C 0.055 3.945 10 C 0.185 3.815 11 H 0.036 0.964 12 C -0.154 4.154 13 C -0.498 4.498 14 H 0.047 0.953 15 C 0.040 3.960 16 N -0.930 5.930 17 Si 0.938 3.062 18 H -0.244 1.244 19 H -0.296 1.296 20 H -0.267 1.267 21 N -0.460 5.460 22 C 0.113 3.887 23 C -0.078 4.078 24 C -0.093 4.093 25 C -0.136 4.136 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.118 4.118 29 C -0.112 4.112 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.269 0.731 42 H 0.075 0.925 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.129 0.871 48 H 0.147 0.853 49 H 0.154 0.846 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.814 -4.552 2.457 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.081 3.919 4 C -0.097 4.097 5 N -0.147 5.147 6 N -0.183 5.183 7 C 0.002 3.998 8 N -0.201 5.201 9 C -0.092 4.092 10 C 0.081 3.919 11 H 0.054 0.946 12 C -0.213 4.213 13 C -0.537 4.537 14 H 0.065 0.935 15 C -0.161 4.161 16 N -0.569 5.569 17 Si 0.764 3.236 18 H -0.169 1.169 19 H -0.223 1.223 20 H -0.192 1.192 21 N -0.153 5.153 22 C -0.009 4.009 23 C -0.116 4.116 24 C -0.094 4.094 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.136 4.136 29 C -0.130 4.130 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.120 0.880 47 H 0.147 0.853 48 H 0.164 0.836 49 H 0.171 0.829 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.364 -4.776 1.696 24.885 hybrid contribution 0.261 0.551 1.021 1.189 sum -24.102 -4.225 2.716 24.620 Atomic orbital electron populations 1.23027 0.77883 1.04272 1.01806 1.87942 1.22530 1.26483 1.95772 1.20643 0.80434 0.86371 1.04497 1.24937 0.96742 1.05947 0.82083 1.73863 0.97041 1.18245 1.25556 1.74632 1.12198 1.22060 1.09454 1.23091 0.86999 1.01159 0.88524 1.59965 1.02938 1.07312 1.49897 1.22086 0.98161 0.89858 0.99102 1.19800 0.91553 0.86390 0.94173 0.94569 1.22215 1.00629 1.01404 0.97016 1.20871 0.94641 1.43772 0.94399 0.93477 1.25724 0.99491 0.93870 0.97044 1.70025 1.31048 1.48506 1.07292 0.85973 0.81302 0.79194 0.77108 1.16855 1.22298 1.19234 1.46560 1.06062 1.53620 1.09055 1.22105 1.02670 0.99572 0.76601 1.20725 1.02085 0.94935 0.93878 1.19644 0.94594 1.01783 0.93365 1.21279 0.99463 1.00899 0.93803 1.21383 0.96904 1.00187 0.96444 1.21514 0.92705 0.99156 1.00617 1.21514 1.01182 0.98950 0.91912 1.21299 0.93626 0.99512 0.98542 0.91731 0.92565 0.88460 0.88553 0.88100 0.94513 0.90190 0.91966 0.92902 0.92986 0.93210 0.92232 0.90628 0.85936 0.88957 0.92078 0.88010 0.85282 0.83571 0.82882 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.48 10.69 -148.98 -1.59 -10.07 16 3 C 0.16 3.24 6.30 71.24 0.45 3.69 16 4 C 0.17 5.44 7.70 137.64 1.06 6.50 16 5 N -0.30 -11.89 12.18 -49.53 -0.60 -12.49 16 6 N -0.34 -14.49 9.81 -58.00 -0.57 -15.05 16 7 C 0.36 14.68 6.21 260.11 1.62 16.30 16 8 N -0.47 -20.60 4.37 -710.99 -3.11 -23.71 16 9 C 0.06 2.25 8.69 127.69 1.11 3.36 16 10 C 0.18 8.81 1.69 44.17 0.07 8.89 16 11 H 0.04 1.81 5.66 -2.39 -0.01 1.80 16 12 C -0.15 -6.83 8.39 71.98 0.60 -6.22 16 13 C -0.50 -27.20 7.57 25.60 0.19 -27.01 16 14 H 0.05 2.82 8.04 -2.91 -0.02 2.80 16 15 C 0.04 2.22 5.47 84.66 0.46 2.68 16 16 N -0.93 -55.33 13.96 21.45 0.30 -55.03 16 17 Si 0.94 43.43 25.29 68.60 1.73 45.16 16 18 H -0.24 -10.50 6.43 99.48 0.64 -9.86 16 19 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.27 -12.04 6.12 99.48 0.61 -11.43 16 21 N -0.46 -15.77 2.81 -514.86 -1.45 -17.21 16 22 C 0.11 3.26 6.03 86.38 0.52 3.78 16 23 C -0.08 -2.07 5.67 29.85 0.17 -1.90 16 24 C -0.09 -2.25 5.13 -19.87 -0.10 -2.35 16 25 C -0.14 -3.72 9.70 22.27 0.22 -3.50 16 26 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 27 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 28 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 29 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 30 H 0.06 0.43 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 1.36 7.21 -2.39 -0.02 1.34 16 34 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.04 1.49 6.45 -2.38 -0.02 1.47 16 36 H 0.08 3.50 6.80 -2.39 -0.02 3.49 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 2.26 6.33 -2.39 -0.02 2.24 16 40 H 0.05 2.19 6.25 -2.38 -0.01 2.17 16 41 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.08 2.62 5.45 -2.39 -0.01 2.61 16 43 H 0.12 2.62 7.17 -2.39 -0.02 2.60 16 44 H 0.09 2.25 8.09 -2.39 -0.02 2.23 16 45 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 46 H 0.10 3.22 7.74 -2.91 -0.02 3.20 16 47 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 48 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 49 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 50 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -71.34 400.84 3.99 -67.35 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.77 Total: 23.30 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 8.51 Total: -2.25 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -5.43 Total: -123.50 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.59 Total: -10.07 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.73 Total: 45.16 kcal Total: -71.34 3.99 -67.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589642347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.645 kcal (2) G-P(sol) polarization free energy of solvation -71.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds