Wall clock time and date at job start Wed Apr 1 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99528 * 2 1 4 4 C 1.46896 * 111.00342 * 123.95184 * 2 1 3 5 5 C 1.53003 * 109.46973 * 66.04642 * 4 2 1 6 6 C 1.53001 * 109.47248 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47084 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99974 * 269.99801 * 7 6 5 9 9 C 1.50703 * 109.47129 * 263.67196 * 8 7 6 10 10 H 1.08002 * 120.00055 * 0.02562 * 9 8 7 11 11 C 1.37869 * 119.99788 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00124 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00098 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47418 * 89.99588 * 13 11 9 15 15 H 1.48505 * 109.47248 * 209.99845 * 13 11 9 16 16 H 1.48502 * 109.47159 * 329.99599 * 13 11 9 17 17 C 1.34779 * 120.00022 * 90.00497 * 7 6 5 18 18 O 1.21616 * 119.99747 * 4.31539 * 17 7 6 19 19 C 1.47381 * 119.99955 * 184.32538 * 17 7 6 20 20 N 1.31572 * 126.82412 * 354.83836 * 19 17 7 21 21 N 1.28386 * 111.96427 * 180.02562 * 20 19 17 22 22 C 1.46507 * 124.37200 * 179.69114 * 21 20 19 23 23 C 1.37044 * 111.26086 * 359.73331 * 21 20 19 24 24 C 1.39124 * 134.73181 * 179.97438 * 23 21 20 25 25 C 1.36685 * 119.78225 * 180.02562 * 24 23 21 26 26 C 1.38894 * 120.89956 * 359.97438 * 25 24 23 27 27 C 1.36721 * 120.52244 * 0.02562 * 26 25 24 28 28 C 1.39196 * 119.50744 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.46975 * 296.04126 * 1 2 3 30 30 H 1.09000 * 109.47003 * 56.05121 * 1 2 3 31 31 H 1.08999 * 109.46588 * 176.04755 * 1 2 3 32 32 H 1.08997 * 109.47040 * 183.95521 * 3 2 1 33 33 H 1.08995 * 109.47072 * 303.95303 * 3 2 1 34 34 H 1.08999 * 109.47263 * 63.95432 * 3 2 1 35 35 H 1.09002 * 109.47319 * 306.05395 * 4 2 1 36 36 H 1.08997 * 109.47532 * 186.04588 * 4 2 1 37 37 H 1.09003 * 109.46976 * 60.00050 * 5 4 2 38 38 H 1.09004 * 109.47318 * 300.00270 * 5 4 2 39 39 H 1.09003 * 109.47110 * 60.00109 * 6 5 4 40 40 H 1.09004 * 109.47163 * 300.00343 * 6 5 4 41 41 H 1.09003 * 109.46655 * 23.67211 * 8 7 6 42 42 H 1.09004 * 109.46618 * 143.67156 * 8 7 6 43 43 H 0.96999 * 119.99993 * 179.97438 * 12 11 9 44 44 H 1.08997 * 109.47094 * 270.05035 * 22 21 20 45 45 H 1.09003 * 109.46407 * 30.04788 * 22 21 20 46 46 H 1.08999 * 109.46764 * 150.04273 * 22 21 20 47 47 H 1.07998 * 120.10639 * 359.97438 * 24 23 21 48 48 H 1.08005 * 119.54613 * 179.97438 * 25 24 23 49 49 H 1.08000 * 119.74027 * 180.02562 * 26 25 24 50 50 H 1.07995 * 120.24486 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1376 5 6 1.6316 -2.2426 0.9703 6 6 2.1794 -3.0403 2.1555 7 7 1.8314 -4.4542 1.9950 8 6 0.5745 -4.9664 2.5465 9 6 0.8331 -5.5840 3.8967 10 1 1.8335 -5.5936 4.3034 11 6 -0.2075 -6.1367 4.6125 12 7 -1.4259 -6.1246 4.1174 13 14 0.1128 -6.9016 6.2863 14 1 -0.0393 -5.8670 7.3407 15 1 -0.8607 -7.9976 6.5242 16 1 1.4929 -7.4484 6.3248 17 6 2.6677 -5.2839 1.3401 18 8 3.7459 -4.8778 0.9511 19 6 2.2752 -6.6833 1.0953 20 7 1.1918 -7.2869 1.5347 21 7 1.1347 -8.5106 1.1507 22 6 0.0491 -9.4342 1.4899 23 6 2.2207 -8.8419 0.3833 24 6 2.6450 -9.9966 -0.2664 25 6 3.8172 -9.9884 -0.9693 26 6 4.5950 -8.8402 -1.0459 27 6 4.2015 -7.6918 -0.4169 28 6 3.0110 -7.6785 0.3043 29 1 -0.3633 0.4511 0.9233 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3632 -1.0252 -0.0708 32 1 3.0827 1.3434 -0.0709 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5612 -0.3873 2.0628 36 1 3.0798 -0.6610 1.1756 37 1 2.0659 -2.6213 0.0451 38 1 0.5473 -2.3475 0.9323 39 1 1.7447 -2.6614 3.0805 40 1 3.2637 -2.9354 2.1939 41 1 -0.1366 -4.1470 2.6519 42 1 0.1635 -5.7202 1.8748 43 1 -2.1579 -6.5138 4.6209 44 1 0.2890 -9.9512 2.4190 45 1 -0.8781 -8.8747 1.6144 46 1 -0.0712 -10.1633 0.6887 47 1 2.0504 -10.8967 -0.2149 48 1 4.1432 -10.8871 -1.4719 49 1 5.5178 -8.8546 -1.6068 50 1 4.8095 -6.8015 -0.4797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599165961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:37 Heat of formation + Delta-G solvation = 76.016866 kcal Electronic energy + Delta-G solvation = -30791.567171 eV Core-core repulsion = 26821.046870 eV Total energy + Delta-G solvation = -3970.520301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95082 -38.84835 -37.50962 -37.43185 -35.07276 -33.27242 -32.68956 -31.38751 -30.23108 -29.70684 -27.60864 -27.38022 -27.06409 -25.53584 -23.51056 -22.86540 -22.68504 -21.75872 -20.98027 -20.48538 -18.56456 -17.16140 -16.77433 -16.35705 -15.77337 -15.66976 -15.58917 -15.27707 -14.92819 -14.90020 -14.55757 -14.36703 -13.94288 -13.83492 -13.78760 -13.37123 -12.80054 -12.69128 -12.41791 -12.38725 -12.25375 -12.07220 -11.82751 -11.73699 -11.64015 -11.52445 -11.48354 -11.22373 -11.09465 -10.93329 -10.86624 -10.71828 -10.25178 -10.06954 -9.75298 -9.56941 -9.54435 -9.21741 -8.45616 -8.33068 -8.31289 -7.73366 -7.49244 -6.05630 -4.07233 1.27513 1.69079 2.51918 2.86182 3.24447 3.31397 3.37032 3.80039 3.88826 4.09729 4.28508 4.42032 4.70763 4.81112 5.09056 5.14684 5.18334 5.19544 5.28724 5.29696 5.36547 5.41925 5.47226 5.52468 5.58696 5.64673 5.68126 5.73336 5.77725 5.80629 5.80806 5.89463 5.93444 6.04414 6.04673 6.19658 6.21518 6.50727 6.54804 6.66457 6.73824 6.81613 6.87255 7.06474 7.07380 7.10456 7.21578 7.49918 7.74544 7.87879 8.23119 8.33608 8.52018 8.94612 9.07711 9.55616 11.01967 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007595 B = 0.004271 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.900279 B = 6553.816761 C = 9267.192202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.122 3.878 7 N -0.582 5.582 8 C 0.229 3.771 9 C -0.510 4.510 10 H 0.054 0.946 11 C 0.070 3.930 12 N -0.892 5.892 13 Si 0.885 3.115 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.605 3.395 18 O -0.567 6.567 19 C -0.006 4.006 20 N -0.135 5.135 21 N -0.324 5.324 22 C 0.098 3.902 23 C 0.056 3.944 24 C -0.121 4.121 25 C -0.096 4.096 26 C -0.153 4.153 27 C -0.042 4.042 28 C -0.108 4.108 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.260 0.740 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.123 0.877 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 -0.313 -9.293 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.312 5.312 8 C 0.109 3.891 9 C -0.549 4.549 10 H 0.072 0.928 11 C -0.132 4.132 12 N -0.531 5.531 13 Si 0.713 3.287 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.392 3.608 18 O -0.446 6.446 19 C -0.175 4.175 20 N 0.037 4.963 21 N -0.117 5.117 22 C -0.043 4.043 23 C -0.056 4.056 24 C -0.142 4.142 25 C -0.116 4.116 26 C -0.173 4.173 27 C -0.062 4.062 28 C -0.116 4.116 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.141 0.859 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.181 -0.300 -9.173 9.713 hybrid contribution 0.191 -0.376 1.560 1.616 sum 3.371 -0.676 -7.613 8.353 Atomic orbital electron populations 1.22441 0.87418 1.02795 1.00067 1.61973 1.08099 1.13380 1.43778 1.22363 1.00730 0.89077 1.00147 1.22077 1.00092 0.93876 0.90870 1.21960 1.01621 0.93243 0.99987 1.21246 1.00741 0.80751 0.97428 1.48090 1.22772 1.07735 1.52558 1.19842 0.79164 0.95334 0.94720 1.21341 0.94419 1.37295 1.01871 0.92823 1.24760 0.94974 0.95919 0.97520 1.69935 0.99397 1.45843 1.37947 0.86710 0.77973 0.79136 0.84878 1.20684 1.21250 1.20133 1.16669 0.83633 0.82485 0.78058 1.90676 1.22650 1.76532 1.54725 1.22736 0.94291 0.95855 1.04633 1.73938 1.18723 0.91251 1.12387 1.45638 1.18169 1.08411 1.39446 1.21985 0.89072 0.91645 1.01556 1.19299 0.90766 0.96665 0.98824 1.19689 0.98350 0.95315 1.00896 1.20589 0.94074 0.98294 0.98665 1.20708 1.00822 0.93036 1.02708 1.20357 0.93652 0.98511 0.93686 1.19522 0.97234 0.92323 1.02520 0.95664 0.91795 0.90723 0.91437 0.91665 0.95868 0.94679 0.90685 0.91008 0.91673 0.90497 0.90678 0.95128 0.91421 0.93051 0.90536 0.88026 0.89883 0.86145 0.85864 0.85925 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.07 0.56 0.81 16 2 N -0.55 -7.23 5.02 -251.26 -1.26 -8.49 16 3 C 0.03 0.27 9.57 60.07 0.57 0.84 16 4 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 5 C -0.13 -2.12 5.46 -26.73 -0.15 -2.26 16 6 C 0.12 2.28 5.41 -4.04 -0.02 2.26 16 7 N -0.58 -12.90 2.47 -176.34 -0.44 -13.34 16 8 C 0.23 5.62 4.76 -5.19 -0.02 5.59 16 9 C -0.51 -13.56 8.52 -34.44 -0.29 -13.85 16 10 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 11 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 12 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 13 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 C 0.60 13.88 7.61 -12.54 -0.10 13.78 16 18 O -0.57 -13.30 15.98 5.26 0.08 -13.21 16 19 C -0.01 -0.13 7.00 -80.76 -0.57 -0.69 16 20 N -0.13 -2.99 7.73 34.46 0.27 -2.72 16 21 N -0.32 -6.03 3.74 -65.49 -0.24 -6.28 16 22 C 0.10 1.38 11.24 59.85 0.67 2.05 16 23 C 0.06 0.98 6.85 -84.21 -0.58 0.41 16 24 C -0.12 -1.66 9.94 -39.81 -0.40 -2.05 16 25 C -0.10 -1.18 9.96 -39.90 -0.40 -1.58 16 26 C -0.15 -2.06 9.98 -39.89 -0.40 -2.46 16 27 C -0.04 -0.70 9.88 -39.77 -0.39 -1.10 16 28 C -0.11 -2.12 6.34 -105.05 -0.67 -2.79 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.07 0.97 6.47 -51.93 -0.34 0.64 16 32 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.07 0.99 8.06 -51.93 -0.42 0.58 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.10 6.55 -51.93 -0.34 0.76 16 39 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 40 H 0.07 1.40 7.36 -51.93 -0.38 1.01 16 41 H 0.03 0.78 8.02 -51.93 -0.42 0.36 16 42 H 0.07 1.75 5.31 -51.93 -0.28 1.47 16 43 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 47 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 48 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 49 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 50 H 0.13 2.26 7.67 -52.49 -0.40 1.85 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -31.66 410.45 -10.00 -41.65 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.03 Total: 2.22 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.28 Total: 1.53 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.94 Total: -54.30 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.66 -10.00 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599165961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.672 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds