Wall clock time and date at job start Wed Apr 1 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50702 * 109.46995 * 65.00211 * 4 2 1 6 6 H 1.08000 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00347 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00057 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47446 * 59.99708 * 9 7 5 11 11 H 1.48503 * 109.47009 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47104 * 299.99470 * 9 7 5 13 13 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 14 14 N 1.46902 * 109.46626 * 294.99959 * 13 2 1 15 15 C 1.46956 * 111.00082 * 293.79602 * 14 13 2 16 16 C 1.53053 * 109.36142 * 176.81322 * 15 14 13 17 17 N 1.46952 * 109.36370 * 58.40496 * 16 15 14 18 18 C 1.37929 * 110.99863 * 176.81028 * 17 16 15 19 19 O 1.34561 * 126.73603 * 123.48814 * 18 17 16 20 20 C 1.34292 * 108.30955 * 179.83622 * 19 18 17 21 21 C 1.50697 * 125.12642 * 180.16815 * 20 19 18 22 22 C 1.52999 * 117.50067 * 189.03146 * 21 20 19 23 23 C 1.53004 * 117.49956 * 120.36965 * 21 20 19 24 24 N 1.29772 * 109.75644 * 0.43814 * 20 19 18 25 25 C 1.36315 * 108.66156 * 359.73464 * 24 20 19 26 26 C 1.43202 * 126.63129 * 180.02562 * 25 24 20 27 27 N 7.39496 * 108.41549 * 46.99794 * 2 1 3 28 28 C 1.46950 * 110.88370 * 300.67694 * 17 16 15 29 29 C 1.46962 * 110.99604 * 170.00077 * 14 13 2 30 30 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 31 31 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 32 32 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47194 * 184.99702 * 4 2 1 34 34 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 35 35 H 0.96997 * 120.00335 * 180.02562 * 8 7 5 36 36 H 1.08993 * 109.46955 * 55.00306 * 13 2 1 37 37 H 1.09000 * 109.47050 * 175.00134 * 13 2 1 38 38 H 1.08995 * 109.49528 * 296.78228 * 15 14 13 39 39 H 1.09000 * 109.48453 * 56.85119 * 15 14 13 40 40 H 1.08996 * 109.49096 * 298.43807 * 16 15 14 41 41 H 1.09003 * 109.50361 * 178.38196 * 16 15 14 42 42 H 1.08998 * 115.54817 * 334.70579 * 21 20 19 43 43 H 1.08993 * 117.50030 * 0.02562 * 22 21 20 44 44 H 1.09004 * 117.49943 * 145.02296 * 22 21 20 45 45 H 1.08997 * 117.49597 * 214.98135 * 23 21 20 46 46 H 1.09001 * 117.49805 * 359.97438 * 23 21 20 47 47 H 1.08999 * 109.48896 * 299.35965 * 28 17 16 48 48 H 1.08997 * 109.51192 * 179.30067 * 28 17 16 49 49 H 1.08995 * 109.48657 * 303.15809 * 29 14 13 50 50 H 1.08996 * 109.48862 * 63.22185 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4989 0.5629 -5.2496 10 1 2.0920 1.9229 -5.1870 11 1 1.9938 -0.1372 -6.4621 12 1 0.0190 0.6705 -5.3090 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.3371 1.3363 2.4914 16 6 1.8465 2.1266 3.7068 17 7 2.1077 1.3531 4.9287 18 6 1.7427 2.0655 6.0520 19 8 0.8768 1.6764 7.0057 20 6 0.7995 2.6496 7.9278 21 6 -0.0597 2.6055 9.1651 22 6 -0.1795 3.8896 9.9882 23 6 0.6451 2.7142 10.5188 24 7 1.5717 3.6363 7.5900 25 6 2.1909 3.3237 6.4165 26 6 3.1249 4.1387 5.6996 27 7 3.8661 4.7853 5.1312 28 6 1.4220 0.0542 4.8830 29 6 1.9125 -0.7361 3.6676 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7994 -1.2055 34 1 1.6054 -1.7197 -1.2952 35 1 2.9228 -1.8422 -4.7317 36 1 1.6054 -1.7198 1.2951 37 1 3.1263 -0.7995 1.2056 38 1 3.4125 1.1773 2.5709 39 1 2.1182 1.8953 1.5816 40 1 0.7760 2.3092 3.6139 41 1 2.3747 3.0787 3.7592 42 1 -0.9377 1.9624 9.1050 43 1 0.3627 4.7665 9.6345 44 1 -1.1363 4.0912 10.4699 45 1 0.2304 2.1429 11.3493 46 1 1.7302 2.8171 10.5145 47 1 0.3466 0.2133 4.8034 48 1 1.6405 -0.5050 5.7927 49 1 1.3841 -1.6880 3.6153 50 1 2.9830 -0.9188 3.7605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602445601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:12 Heat of formation + Delta-G solvation = 68.764351 kcal Electronic energy + Delta-G solvation = -29657.068877 eV Core-core repulsion = 25686.234083 eV Total energy + Delta-G solvation = -3970.834793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.60627 -40.83340 -38.46150 -38.04725 -37.75547 -35.80532 -35.78427 -34.00449 -32.25506 -31.02880 -29.11600 -28.20796 -26.23284 -26.19194 -24.75281 -24.47903 -23.56587 -23.21879 -21.85798 -21.14932 -20.49277 -20.22089 -18.77835 -18.44030 -18.15041 -17.03677 -16.71400 -16.61096 -16.27515 -16.11350 -15.83518 -15.81080 -15.47100 -15.26844 -14.88986 -14.79248 -14.38967 -14.35901 -14.15765 -13.98636 -13.49812 -13.28031 -13.21030 -13.05220 -12.77030 -12.70164 -12.63339 -12.47734 -12.44348 -12.38802 -12.27923 -12.16376 -11.99545 -11.83341 -11.77522 -11.45736 -11.37076 -11.11589 -11.05089 -10.88446 -10.52187 -9.37627 -9.20490 -8.17318 -6.25805 -0.24894 0.79114 0.90474 1.28347 1.39763 1.41824 1.49402 2.14300 2.22489 2.41060 2.41593 2.78919 2.93458 3.16271 3.29277 3.47045 3.65500 3.75338 3.79968 3.91477 4.00604 4.03954 4.10026 4.18795 4.23404 4.27562 4.38541 4.42856 4.53376 4.56524 4.71042 4.79132 4.81325 4.81901 4.87189 4.89555 4.96656 5.01581 5.05201 5.19008 5.26805 5.29091 5.33264 5.39867 5.47905 5.53280 5.55907 5.80574 5.89795 5.96440 6.06168 6.21588 6.31540 6.37463 6.90149 7.42206 8.94245 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.001979 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.825572 B =14146.159814 C =14654.621436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.052 0.948 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.075 3.925 14 N -0.534 5.534 15 C 0.056 3.944 16 C 0.066 3.934 17 N -0.435 5.435 18 C 0.244 3.756 19 O -0.200 6.200 20 C 0.242 3.758 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.146 4.146 24 N -0.456 5.456 25 C -0.013 4.013 26 C 0.316 3.684 27 N -0.432 5.432 28 C 0.054 3.946 29 C 0.053 3.947 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.039 0.961 33 H -0.016 1.016 34 H -0.007 1.007 35 H 0.261 0.739 36 H 0.078 0.922 37 H 0.022 0.978 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.163 0.837 43 H 0.093 0.907 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 4.601 31.757 33.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.053 4.053 14 N -0.259 5.259 15 C -0.073 4.073 16 C -0.059 4.059 17 N -0.157 5.157 18 C 0.085 3.915 19 O -0.086 6.086 20 C 0.031 3.969 21 C -0.111 4.111 22 C -0.180 4.180 23 C -0.184 4.184 24 N -0.183 5.183 25 C -0.136 4.136 26 C 0.001 3.999 27 N -0.111 5.111 28 C -0.071 4.071 29 C -0.075 4.075 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.002 0.998 34 H 0.011 0.989 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.180 0.820 43 H 0.111 0.889 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.131 0.869 49 H 0.126 0.874 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.316 5.984 31.074 32.479 hybrid contribution 0.356 -0.660 -1.702 1.860 sum -6.959 5.324 29.371 30.651 Atomic orbital electron populations 1.21466 0.94472 1.00572 1.00369 1.21044 0.96837 0.98412 0.92958 0.92927 1.19007 0.94012 0.94812 0.92653 1.21604 1.34346 1.08537 0.92102 0.92225 1.25917 0.95364 0.96095 1.02552 1.70081 1.40247 1.22867 1.24255 0.85613 0.78963 0.78743 0.78415 1.19523 1.21104 1.19178 1.22032 0.97139 0.97244 0.88864 1.62210 1.57607 1.03706 1.02379 1.22175 0.96472 0.91387 0.97251 1.22520 1.02023 0.95846 0.85476 1.59510 1.51657 1.05481 0.99076 1.21547 0.88960 0.91179 0.89812 1.84457 1.49263 1.44718 1.30112 1.25442 0.98129 0.80186 0.93126 1.20509 0.99909 1.07161 0.83515 1.23214 1.03694 0.91334 0.99788 1.23272 0.99650 1.01619 0.93890 1.70615 1.09801 1.27422 1.10463 1.16247 1.06807 0.93234 0.97284 1.23679 0.91672 0.92115 0.92415 1.81326 1.11031 1.08975 1.09725 1.22514 0.97895 0.86334 1.00390 1.22284 1.00201 0.97344 0.87653 0.91486 0.94669 0.94216 0.99761 0.98855 0.93006 0.90319 0.95994 0.94341 0.89069 0.90486 0.90023 0.81968 0.88891 0.84836 0.84697 0.89273 0.90633 0.86855 0.87399 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.98 8.89 71.98 0.64 -3.34 16 2 C -0.07 -2.85 2.26 -10.79 -0.02 -2.88 16 3 H 0.05 2.07 6.28 -2.39 -0.01 2.06 16 4 C 0.03 1.68 4.45 29.85 0.13 1.81 16 5 C -0.53 -29.48 8.41 25.60 0.22 -29.26 16 6 H 0.06 3.21 7.06 -2.91 -0.02 3.19 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 9 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 C 0.07 2.34 4.35 86.31 0.38 2.71 16 14 N -0.53 -13.20 4.16 -895.70 -3.73 -16.93 16 15 C 0.06 1.38 5.42 86.31 0.47 1.85 16 16 C 0.07 1.40 5.39 86.31 0.47 1.86 16 17 N -0.44 -8.56 4.74 -811.64 -3.85 -12.40 16 18 C 0.24 4.82 6.62 83.78 0.55 5.37 16 19 O -0.20 -3.33 9.98 -4.91 -0.05 -3.38 16 20 C 0.24 3.83 7.84 88.41 0.69 4.52 16 21 C -0.09 -0.72 6.33 -11.54 -0.07 -0.79 16 22 C -0.14 -0.91 10.13 30.62 0.31 -0.60 16 23 C -0.15 -0.81 10.24 30.62 0.31 -0.49 16 24 N -0.46 -9.56 10.85 -294.69 -3.20 -12.76 16 25 C -0.01 -0.30 6.85 39.74 0.27 -0.03 16 26 C 0.32 8.35 13.70 88.33 1.21 9.56 16 27 N -0.43 -12.88 18.54 19.00 0.35 -12.53 16 28 C 0.05 0.85 5.05 86.31 0.44 1.29 16 29 C 0.05 1.00 5.61 86.31 0.48 1.48 16 30 H 0.07 2.04 7.75 -2.39 -0.02 2.02 16 31 H 0.03 1.37 6.95 -2.39 -0.02 1.35 16 32 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 33 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 34 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.08 2.38 8.03 -2.39 -0.02 2.36 16 37 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 2.48 6.25 -2.39 -0.01 2.46 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.87 5.85 -2.39 -0.01 1.85 16 42 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.09 0.99 7.85 -2.39 -0.02 0.97 16 44 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.11 1.38 8.07 -2.39 -0.02 1.36 16 49 H 0.11 1.72 8.07 -2.39 -0.02 1.70 16 50 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -68.96 407.52 -0.29 -69.25 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 0.94 Total: 5.32 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 6.93 Total: -6.59 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -10.14 Total: -111.09 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.05 Total: -3.38 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.96 -0.29 -69.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602445601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.012 kcal (2) G-P(sol) polarization free energy of solvation -68.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds