Wall clock time and date at job start Wed Apr 1 2020 03:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47507 * 2 1 4 4 C 1.35497 * 126.97759 * 265.00358 * 3 2 1 5 5 N 1.30522 * 107.30480 * 179.97438 * 4 3 2 6 6 N 1.28595 * 109.67227 * 359.72918 * 5 4 3 7 7 C 1.30517 * 109.67533 * 0.44706 * 6 5 4 8 8 C 1.50704 * 126.35143 * 179.82565 * 7 6 5 9 9 C 1.53006 * 109.46894 * 269.69057 * 8 7 6 10 10 N 1.46900 * 109.47078 * 179.97438 * 9 8 7 11 11 C 1.46896 * 111.00195 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47382 * 179.97438 * 11 10 9 13 13 C 1.38280 * 119.97205 * 270.02476 * 12 11 10 14 14 C 1.38250 * 120.10833 * 180.02562 * 13 12 11 15 15 C 1.38159 * 120.05742 * 359.68104 * 14 13 12 16 16 C 1.38710 * 119.94311 * 0.57011 * 15 14 13 17 17 O 1.35900 * 120.05544 * 179.72143 * 16 15 14 18 18 C 1.42898 * 117.00172 * 359.72769 * 17 16 15 19 19 C 1.52997 * 109.47319 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46838 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47419 * 209.99978 * 24 22 20 27 27 H 1.48499 * 109.47011 * 330.00539 * 24 22 20 28 28 C 1.38129 * 119.97079 * 90.00085 * 12 11 10 29 29 H 1.09004 * 109.47277 * 59.99480 * 1 2 3 30 30 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46977 * 300.00354 * 1 2 3 32 32 H 1.08999 * 109.46413 * 239.99941 * 2 1 3 33 33 H 1.08997 * 109.46927 * 120.00705 * 2 1 3 34 34 H 1.07995 * 126.35000 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47520 * 149.69354 * 8 7 6 36 36 H 1.08996 * 109.47045 * 29.68423 * 8 7 6 37 37 H 1.08996 * 109.47046 * 59.99370 * 9 8 7 38 38 H 1.09006 * 109.46798 * 299.99638 * 9 8 7 39 39 H 1.00901 * 111.00271 * 303.95429 * 10 9 8 40 40 H 1.09005 * 109.46944 * 59.99947 * 11 10 9 41 41 H 1.09002 * 109.47398 * 300.00389 * 11 10 9 42 42 H 1.08000 * 119.95034 * 0.02562 * 13 12 11 43 43 H 1.08006 * 119.97154 * 179.97438 * 14 13 12 44 44 H 1.08006 * 120.03137 * 180.29323 * 15 14 13 45 45 H 1.09002 * 109.47259 * 300.00149 * 18 17 16 46 46 H 1.09001 * 109.47074 * 60.00171 * 18 17 16 47 47 H 1.09002 * 109.47153 * 300.00307 * 19 18 17 48 48 H 1.08998 * 109.47533 * 59.99936 * 19 18 17 49 49 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 50 50 H 1.07998 * 120.02418 * 0.02613 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3790 2.1181 -1.0783 5 7 2.7522 3.2898 -0.6407 6 7 2.6409 3.3291 0.6399 7 6 2.2007 2.1812 1.0782 8 6 1.9377 1.8156 2.5163 9 6 3.2038 1.2132 3.1291 10 7 2.9476 0.8573 4.5311 11 6 4.1438 0.2740 5.1531 12 6 3.8436 -0.0770 6.5876 13 6 4.0604 0.8542 7.5866 14 6 3.7864 0.5350 8.9035 15 6 3.2890 -0.7135 9.2239 16 6 3.0756 -1.6512 8.2242 17 8 2.5918 -2.8819 8.5374 18 6 2.3304 -3.1443 9.9176 19 6 1.7945 -4.5689 10.0733 20 6 1.5183 -4.8454 11.5287 21 1 1.7058 -4.0814 12.2686 22 6 1.0252 -6.0735 11.9157 23 7 0.7965 -7.0038 11.0146 24 14 0.6835 -6.4166 13.7198 25 1 -0.7146 -6.0320 14.0406 26 1 0.8741 -7.8636 13.9933 27 1 1.6192 -5.6265 14.5598 28 6 3.3516 -1.3285 6.9033 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3603 1.7961 -2.1090 35 1 1.1289 1.0865 2.5638 36 1 1.6547 2.7092 3.0725 37 1 4.0127 1.9422 3.0815 38 1 3.4868 0.3195 2.5728 39 1 2.6214 1.6566 5.0533 40 1 4.9597 0.9961 5.1193 41 1 4.4328 -0.6264 4.6112 42 1 4.4443 1.8325 7.3377 43 1 3.9570 1.2638 9.6821 44 1 3.0707 -0.9608 10.2523 45 1 3.2528 -3.0382 10.4886 46 1 1.5900 -2.4355 10.2883 47 1 0.8721 -4.6745 9.5023 48 1 2.5345 -5.2781 9.7025 49 1 0.4492 -7.8677 11.2867 50 1 3.1826 -2.0554 6.1226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610480155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:07 Heat of formation + Delta-G solvation = 49.733121 kcal Electronic energy + Delta-G solvation = -27958.387517 eV Core-core repulsion = 23986.727467 eV Total energy + Delta-G solvation = -3971.660049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.52327 -39.85269 -37.84631 -36.64672 -36.12285 -33.48376 -33.26567 -31.17564 -31.15093 -30.73387 -29.25794 -28.67277 -25.69380 -24.93444 -24.57158 -22.97937 -22.61801 -22.38734 -21.66672 -20.91342 -20.15888 -17.75802 -17.52592 -16.67235 -16.46533 -16.23858 -15.72875 -15.66293 -15.59903 -15.34986 -15.30982 -14.82631 -14.65092 -14.47981 -13.84189 -13.71713 -13.59969 -13.37200 -12.97998 -12.82191 -12.63595 -12.53443 -12.33034 -12.13209 -12.06131 -11.78797 -11.68738 -11.42724 -11.40187 -11.25402 -10.89807 -10.73221 -10.68684 -10.63784 -10.46414 -9.88292 -9.67942 -9.58311 -9.32088 -8.90195 -8.68353 -8.46821 -7.87040 -6.12398 -4.17055 1.35196 1.43219 1.64864 2.01525 2.51415 3.25863 3.31918 3.34659 3.53905 3.80532 3.91963 3.96331 4.12848 4.24955 4.31080 4.38632 4.43712 4.53853 4.60363 4.74285 4.87636 4.91741 4.96663 5.01496 5.06717 5.11527 5.24110 5.25405 5.30736 5.38084 5.40602 5.43886 5.49232 5.60058 5.66378 5.77484 5.82269 6.01524 6.04152 6.15725 6.42310 6.50609 6.54658 6.55903 6.63278 6.71184 6.95660 7.00310 7.48603 7.61895 7.79368 8.04348 8.21822 8.36498 8.88496 9.47361 10.99117 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.001555 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.672089 B =18003.291902 C =19419.153550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.471 5.471 4 C 0.147 3.853 5 N -0.299 5.299 6 N -0.294 5.294 7 C 0.183 3.817 8 C -0.034 4.034 9 C 0.065 3.935 10 N -0.682 5.682 11 C 0.104 3.896 12 C -0.053 4.053 13 C -0.166 4.166 14 C -0.080 4.080 15 C -0.210 4.210 16 C 0.144 3.856 17 O -0.315 6.315 18 C 0.065 3.935 19 C 0.025 3.975 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.217 0.783 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.347 0.653 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.130 0.870 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.263 0.737 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.363 16.448 -22.163 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.162 5.162 4 C -0.140 4.140 5 N -0.138 5.138 6 N -0.135 5.135 7 C -0.085 4.085 8 C -0.074 4.074 9 C -0.065 4.065 10 N -0.314 5.314 11 C -0.024 4.024 12 C -0.054 4.054 13 C -0.184 4.184 14 C -0.098 4.098 15 C -0.229 4.229 16 C 0.097 3.903 17 O -0.229 6.229 18 C -0.009 4.009 19 C -0.012 4.012 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.158 4.158 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.233 0.767 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.165 0.835 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.073 0.927 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.478 16.880 -22.490 28.334 hybrid contribution -0.171 -0.801 1.163 1.423 sum 3.307 16.079 -21.326 26.913 Atomic orbital electron populations 1.22177 0.93326 1.03983 1.03418 1.22012 0.96259 0.78601 1.05594 1.46439 1.48591 1.14182 1.06997 1.26435 1.02615 0.89885 0.95105 1.74260 1.18745 1.17342 1.03467 1.74279 1.17759 1.18061 1.03365 1.24774 1.02775 0.88577 0.92406 1.20012 0.99292 1.02954 0.85113 1.21856 0.95515 0.99388 0.89730 1.60447 1.32909 1.36218 1.01799 1.20819 0.90696 0.99629 0.91275 1.19341 0.98541 0.93323 0.94161 1.20783 1.05606 0.99239 0.92813 1.20853 0.97063 0.95747 0.96170 1.21406 1.06722 0.95025 0.99731 1.19202 0.92239 0.85333 0.93506 1.86174 1.77623 1.28171 1.30888 1.23329 0.99020 1.01524 0.77010 1.19123 0.97127 0.87525 0.97419 1.20975 1.44483 0.99189 0.91892 0.92364 1.24989 0.95258 0.96004 0.97917 1.69978 1.44356 1.05040 1.33355 0.86485 0.78719 0.77539 0.84628 1.20489 1.21042 1.19763 1.20243 1.04253 0.97252 0.94006 0.91761 0.89746 0.91448 0.88177 0.88066 0.76673 0.88790 0.88178 0.94188 0.91015 0.83488 0.94055 0.90023 0.86712 0.86194 0.85258 0.93150 0.93128 0.95388 0.95399 0.92711 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 10.24 37.16 0.38 -0.12 16 2 C 0.10 0.30 6.54 -4.04 -0.03 0.27 16 3 N -0.47 -3.01 2.75 -115.31 -0.32 -3.33 16 4 C 0.15 1.07 12.74 -89.94 -1.15 -0.08 16 5 N -0.30 -3.45 12.21 29.69 0.36 -3.09 16 6 N -0.29 -3.53 12.21 32.80 0.40 -3.13 16 7 C 0.18 1.57 7.28 -154.99 -1.13 0.44 16 8 C -0.03 -0.22 5.74 -27.88 -0.16 -0.38 16 9 C 0.07 0.45 5.67 -3.82 -0.02 0.43 16 10 N -0.68 -5.51 6.49 -115.06 -0.75 -6.26 16 11 C 0.10 0.94 5.81 -4.98 -0.03 0.91 16 12 C -0.05 -0.63 5.39 -104.65 -0.56 -1.19 16 13 C -0.17 -1.88 9.70 -39.56 -0.38 -2.27 16 14 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 15 C -0.21 -3.19 9.04 -39.44 -0.36 -3.55 16 16 C 0.14 2.45 6.69 -39.22 -0.26 2.19 16 17 O -0.32 -6.39 10.14 -19.43 -0.20 -6.59 16 18 C 0.07 1.38 4.68 37.16 0.17 1.55 16 19 C 0.03 0.65 5.34 -27.89 -0.15 0.51 16 20 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 24 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 C -0.14 -2.01 9.64 -39.43 -0.38 -2.39 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.27 7.82 -51.93 -0.41 -0.13 16 32 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.10 0.28 8.02 -51.93 -0.42 -0.14 16 34 H 0.22 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.09 0.52 7.62 -51.93 -0.40 0.13 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.35 2.64 8.72 -39.29 -0.34 2.30 16 40 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 42 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.13 1.95 6.30 -52.48 -0.33 1.62 16 45 H 0.05 1.02 7.67 -51.93 -0.40 0.62 16 46 H 0.05 1.02 7.65 -51.93 -0.40 0.62 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 420.43 15.07 6.34 6.34 Total: -1.00 -34.14 420.43 -11.45 -45.59 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -8.14 Total: -1.77 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -4.86 Total: -18.36 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.44 Total: -41.26 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.20 Total: -6.59 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.14 -11.45 -45.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610480155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.327 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds