Wall clock time and date at job start Wed Apr 1 2020 03:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47507 * 2 1 4 4 C 1.35497 * 126.97759 * 265.00358 * 3 2 1 5 5 N 1.30522 * 107.30480 * 179.97438 * 4 3 2 6 6 N 1.28595 * 109.67227 * 359.72918 * 5 4 3 7 7 C 1.30517 * 109.67533 * 0.44706 * 6 5 4 8 8 C 1.50704 * 126.35143 * 179.82565 * 7 6 5 9 9 C 1.53006 * 109.46894 * 269.69057 * 8 7 6 10 10 N 1.46900 * 109.47078 * 179.97438 * 9 8 7 11 11 C 1.46896 * 111.00195 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47382 * 179.97438 * 11 10 9 13 13 C 1.38280 * 119.97205 * 270.02476 * 12 11 10 14 14 C 1.38250 * 120.10833 * 180.02562 * 13 12 11 15 15 C 1.38159 * 120.05742 * 359.68104 * 14 13 12 16 16 C 1.38710 * 119.94311 * 0.57011 * 15 14 13 17 17 O 1.35900 * 120.05544 * 179.72143 * 16 15 14 18 18 C 1.42898 * 117.00172 * 359.72769 * 17 16 15 19 19 C 1.52997 * 109.47319 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46838 * 89.99826 * 24 22 20 26 26 H 1.48497 * 109.47419 * 209.99978 * 24 22 20 27 27 H 1.48499 * 109.47011 * 330.00539 * 24 22 20 28 28 C 1.38129 * 119.97079 * 90.00085 * 12 11 10 29 29 H 1.09004 * 109.47277 * 59.99480 * 1 2 3 30 30 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46977 * 300.00354 * 1 2 3 32 32 H 1.08999 * 109.46413 * 239.99941 * 2 1 3 33 33 H 1.08997 * 109.46927 * 120.00705 * 2 1 3 34 34 H 1.07995 * 126.35000 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47520 * 149.69354 * 8 7 6 36 36 H 1.08996 * 109.47045 * 29.68423 * 8 7 6 37 37 H 1.08996 * 109.47046 * 59.99370 * 9 8 7 38 38 H 1.09006 * 109.46798 * 299.99638 * 9 8 7 39 39 H 1.00901 * 111.00271 * 303.95429 * 10 9 8 40 40 H 1.09005 * 109.46944 * 59.99947 * 11 10 9 41 41 H 1.09002 * 109.47398 * 300.00389 * 11 10 9 42 42 H 1.08000 * 119.95034 * 0.02562 * 13 12 11 43 43 H 1.08006 * 119.97154 * 179.97438 * 14 13 12 44 44 H 1.08006 * 120.03137 * 180.29323 * 15 14 13 45 45 H 1.09002 * 109.47259 * 300.00149 * 18 17 16 46 46 H 1.09001 * 109.47074 * 60.00171 * 18 17 16 47 47 H 1.09002 * 109.47153 * 300.00307 * 19 18 17 48 48 H 1.08998 * 109.47533 * 59.99936 * 19 18 17 49 49 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 50 50 H 1.07998 * 120.02418 * 0.02613 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3790 2.1181 -1.0783 5 7 2.7522 3.2898 -0.6407 6 7 2.6409 3.3291 0.6399 7 6 2.2007 2.1812 1.0782 8 6 1.9377 1.8156 2.5163 9 6 3.2038 1.2132 3.1291 10 7 2.9476 0.8573 4.5311 11 6 4.1438 0.2740 5.1531 12 6 3.8436 -0.0770 6.5876 13 6 4.0604 0.8542 7.5866 14 6 3.7864 0.5350 8.9035 15 6 3.2890 -0.7135 9.2239 16 6 3.0756 -1.6512 8.2242 17 8 2.5918 -2.8819 8.5374 18 6 2.3304 -3.1443 9.9176 19 6 1.7945 -4.5689 10.0733 20 6 1.5183 -4.8454 11.5287 21 1 1.7058 -4.0814 12.2686 22 6 1.0252 -6.0735 11.9157 23 7 0.7965 -7.0038 11.0146 24 14 0.6835 -6.4166 13.7198 25 1 -0.7146 -6.0320 14.0406 26 1 0.8741 -7.8636 13.9933 27 1 1.6192 -5.6265 14.5598 28 6 3.3516 -1.3285 6.9033 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3603 1.7961 -2.1090 35 1 1.1289 1.0865 2.5638 36 1 1.6547 2.7092 3.0725 37 1 4.0127 1.9422 3.0815 38 1 3.4868 0.3195 2.5728 39 1 2.6214 1.6566 5.0533 40 1 4.9597 0.9961 5.1193 41 1 4.4328 -0.6264 4.6112 42 1 4.4443 1.8325 7.3377 43 1 3.9570 1.2638 9.6821 44 1 3.0707 -0.9608 10.2523 45 1 3.2528 -3.0382 10.4886 46 1 1.5900 -2.4355 10.2883 47 1 0.8721 -4.6745 9.5023 48 1 2.5345 -5.2781 9.7025 49 1 0.4492 -7.8677 11.2867 50 1 3.1826 -2.0554 6.1226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610480155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:06 Heat of formation + Delta-G solvation = 30.488993 kcal Electronic energy + Delta-G solvation = -27959.222005 eV Core-core repulsion = 23986.727467 eV Total energy + Delta-G solvation = -3972.494537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.11737 -41.05878 -38.96206 -37.42688 -36.64138 -35.46555 -34.05319 -32.57292 -31.94133 -31.53145 -30.59999 -29.42716 -27.10056 -26.15926 -25.08472 -23.70148 -23.48415 -23.21970 -23.11301 -21.67373 -21.28893 -19.10822 -18.18412 -17.99888 -17.30071 -17.11328 -16.92147 -16.88026 -16.69444 -16.40165 -16.14214 -16.06557 -15.38192 -15.13209 -14.80795 -14.42833 -14.36527 -14.32507 -14.09427 -14.03192 -13.82297 -13.56851 -13.21866 -13.01041 -12.96159 -12.75098 -12.59585 -12.53190 -12.42855 -12.35833 -12.30751 -12.19883 -11.80606 -11.58318 -11.55345 -11.36600 -11.28470 -11.14533 -10.61660 -10.24984 -9.82381 -9.43600 -9.06844 -8.26441 -6.40093 0.35831 0.55786 0.84363 1.41439 1.43486 1.54627 1.57870 1.85707 2.28195 2.52458 2.74184 3.07996 3.12409 3.58607 3.71704 3.77608 3.84120 3.94349 3.97133 4.02072 4.07308 4.18929 4.25585 4.27587 4.34419 4.35170 4.39758 4.45603 4.48098 4.56090 4.57804 4.69385 4.74500 4.79595 4.86913 4.88631 4.96040 5.08541 5.13310 5.19071 5.25650 5.32300 5.46560 5.47455 5.54688 5.62592 5.69171 5.86682 5.96943 5.97870 6.08528 6.39038 6.59562 6.74610 7.30047 7.73159 8.86561 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.001555 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.672089 B =18003.291902 C =19419.153550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.467 5.467 4 C 0.160 3.840 5 N -0.351 5.351 6 N -0.341 5.341 7 C 0.182 3.818 8 C -0.027 4.027 9 C 0.076 3.924 10 N -0.686 5.686 11 C 0.108 3.892 12 C -0.045 4.045 13 C -0.153 4.153 14 C -0.079 4.079 15 C -0.223 4.223 16 C 0.104 3.896 17 O -0.342 6.342 18 C 0.086 3.914 19 C 0.028 3.972 20 C -0.548 4.548 21 H 0.070 0.930 22 C 0.002 3.998 23 N -0.930 5.930 24 Si 0.976 3.024 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.260 1.260 28 C -0.148 4.148 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.256 0.744 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.351 0.649 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.125 0.875 45 H 0.058 0.942 46 H 0.059 0.941 47 H -0.001 1.001 48 H -0.001 1.001 49 H 0.267 0.733 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 17.609 -22.129 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.157 5.157 4 C -0.128 4.128 5 N -0.190 5.190 6 N -0.181 5.181 7 C -0.088 4.088 8 C -0.067 4.067 9 C -0.054 4.054 10 N -0.318 5.318 11 C -0.020 4.020 12 C -0.046 4.046 13 C -0.171 4.171 14 C -0.097 4.097 15 C -0.242 4.242 16 C 0.059 3.941 17 O -0.256 6.256 18 C 0.011 3.989 19 C -0.009 4.009 20 C -0.585 4.585 21 H 0.088 0.912 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.799 3.201 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.184 1.184 28 C -0.167 4.167 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.272 0.728 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.169 0.831 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.142 0.858 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.017 0.983 48 H 0.017 0.983 49 H 0.076 0.924 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.929 18.063 -22.467 29.094 hybrid contribution -0.286 -1.100 0.990 1.508 sum 3.643 16.963 -21.477 27.609 Atomic orbital electron populations 1.22157 0.93248 1.04580 1.02617 1.22303 0.96238 0.76914 1.07223 1.46648 1.47875 1.15070 1.06141 1.27164 1.00203 0.88768 0.96668 1.74150 1.21289 1.19886 1.03660 1.74163 1.19772 1.20130 1.04035 1.25004 1.02037 0.88272 0.93490 1.19994 0.99423 1.03144 0.84090 1.21748 0.95342 0.99289 0.89050 1.60405 1.32541 1.36583 1.02307 1.20794 0.91439 1.00306 0.89484 1.19633 0.96868 0.92092 0.95980 1.21216 1.03533 1.00304 0.92070 1.21205 0.95826 0.95006 0.97642 1.21501 1.07564 0.95999 0.99125 1.19540 0.94781 0.84654 0.95106 1.86080 1.79121 1.30683 1.29723 1.22834 0.99286 0.98478 0.78288 1.18963 0.95118 0.90173 0.96656 1.21405 1.44534 0.99847 0.92744 0.91175 1.26029 0.94751 0.95684 1.03154 1.70121 1.45185 1.05626 1.35959 0.85289 0.78992 0.77497 0.78308 1.19549 1.20642 1.18381 1.20400 1.04802 0.98547 0.92988 0.91956 0.88423 0.92847 0.85481 0.87579 0.72806 0.87692 0.88281 0.94924 0.90593 0.83050 0.92382 0.89839 0.83315 0.83341 0.85754 0.92348 0.92323 0.98285 0.98294 0.92448 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 10.24 71.98 0.74 0.05 16 2 C 0.09 0.35 6.54 86.38 0.56 0.91 16 3 N -0.47 -5.24 2.75 -518.72 -1.42 -6.66 16 4 C 0.16 2.09 12.74 180.11 2.29 4.39 16 5 N -0.35 -8.09 12.21 -59.99 -0.73 -8.82 16 6 N -0.34 -8.25 12.21 -50.15 -0.61 -8.86 16 7 C 0.18 3.00 7.28 137.98 1.01 4.00 16 8 C -0.03 -0.32 5.74 29.85 0.17 -0.14 16 9 C 0.08 0.92 5.67 86.31 0.49 1.41 16 10 N -0.69 -9.62 6.49 -517.93 -3.36 -12.98 16 11 C 0.11 1.68 5.81 85.56 0.50 2.17 16 12 C -0.05 -0.97 5.39 -19.88 -0.11 -1.08 16 13 C -0.15 -2.97 9.70 22.28 0.22 -2.76 16 14 C -0.08 -1.77 10.04 22.25 0.22 -1.55 16 15 C -0.22 -6.65 9.04 22.36 0.20 -6.45 16 16 C 0.10 3.61 6.69 22.50 0.15 3.76 16 17 O -0.34 -14.49 10.14 -92.43 -0.94 -15.42 16 18 C 0.09 3.75 4.68 71.98 0.34 4.09 16 19 C 0.03 1.54 5.34 29.85 0.16 1.70 16 20 C -0.55 -30.86 9.11 25.60 0.23 -30.62 16 21 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 22 C 0.00 0.14 5.46 84.65 0.46 0.60 16 23 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 24 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 28 C -0.15 -4.26 9.64 22.37 0.22 -4.05 16 29 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.05 0.38 7.82 -2.38 -0.02 0.36 16 32 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.11 0.34 8.02 -2.39 -0.02 0.32 16 34 H 0.26 0.77 8.06 -2.91 -0.02 0.74 16 35 H 0.10 1.01 7.62 -2.39 -0.02 0.99 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.35 4.50 8.72 -89.69 -0.78 3.72 16 40 H 0.06 0.74 8.08 -2.38 -0.02 0.72 16 41 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 42 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 43 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.12 3.73 6.30 -2.91 -0.02 3.72 16 45 H 0.06 2.42 7.67 -2.39 -0.02 2.40 16 46 H 0.06 2.43 7.65 -2.39 -0.02 2.41 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 48 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 49 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 50 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -77.77 420.43 3.24 -74.53 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.15 Total: 12.50 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 7.85 Total: -23.57 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -5.85 Total: -93.26 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.94 Total: -15.42 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -77.77 3.24 -74.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610480155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.016 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds