Wall clock time and date at job start Wed Apr 1 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.99508 * 2 1 4 4 C 1.54323 * 109.88315 * 121.09219 * 2 1 3 5 5 H 1.09001 * 110.87225 * 23.17998 * 4 2 1 6 6 N 1.46900 * 110.72187 * 259.97710 * 4 2 1 7 7 C 1.47901 * 111.00179 * 180.02562 * 6 4 2 8 8 C 1.53994 * 107.06227 * 214.15535 * 7 6 4 9 9 C 1.54602 * 105.13545 * 1.22673 * 8 7 6 10 10 C 1.48536 * 110.99823 * 62.62657 * 6 4 2 11 11 C 1.55159 * 102.94316 * 141.61386 * 4 2 1 12 12 C 1.54912 * 101.57987 * 324.49917 * 11 4 2 13 13 N 1.47017 * 109.88477 * 238.90347 * 2 1 3 14 14 C 1.34782 * 125.64768 * 61.59128 * 13 2 1 15 15 O 1.21577 * 119.99903 * 0.03565 * 14 13 2 16 16 N 1.34775 * 119.99698 * 180.02562 * 14 13 2 17 17 C 1.39462 * 119.99678 * 175.63162 * 16 14 13 18 18 C 1.38643 * 119.64462 * 186.17457 * 17 16 14 19 19 C 1.40828 * 118.67140 * 179.76376 * 18 17 16 20 20 C 1.41549 * 120.99531 * 180.23948 * 19 18 17 21 21 H 1.07997 * 119.99240 * 201.08377 * 20 19 18 22 22 C 1.40021 * 120.00100 * 21.07994 * 20 19 18 23 23 N 1.30742 * 120.00428 * 14.12426 * 22 20 19 24 24 Si 1.86800 * 119.99805 * 194.11910 * 22 20 19 25 25 H 1.48500 * 109.47272 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47196 * 120.00345 * 24 22 20 27 27 H 1.48504 * 109.47381 * 240.00103 * 24 22 20 28 28 C 1.41165 * 118.00384 * 0.49604 * 19 18 17 29 29 C 1.36590 * 119.12649 * 359.73864 * 28 19 18 30 30 N 1.32062 * 121.26208 * 0.02562 * 29 28 19 31 31 H 1.08997 * 109.47445 * 298.90467 * 1 2 3 32 32 H 1.09003 * 109.47422 * 58.90687 * 1 2 3 33 33 H 1.09004 * 109.47100 * 178.90393 * 1 2 3 34 34 H 1.09003 * 109.91413 * 94.80273 * 7 6 4 35 35 H 1.09001 * 109.91456 * 333.51243 * 7 6 4 36 36 H 1.08997 * 110.30476 * 120.13771 * 8 7 6 37 37 H 1.08995 * 110.30852 * 242.31276 * 8 7 6 38 38 H 1.09000 * 110.72109 * 140.31421 * 9 8 7 39 39 H 1.08999 * 110.72203 * 263.59512 * 9 8 7 40 40 H 1.09004 * 110.66726 * 41.28710 * 10 6 4 41 41 H 1.08998 * 110.81205 * 278.22171 * 10 6 4 42 42 H 1.08992 * 111.00238 * 82.57395 * 11 4 2 43 43 H 1.08997 * 111.00407 * 206.39236 * 11 4 2 44 44 H 1.08991 * 110.36657 * 155.84786 * 12 11 4 45 45 H 1.09001 * 110.37028 * 278.06250 * 12 11 4 46 46 H 0.96998 * 120.00476 * 355.62718 * 16 14 13 47 47 H 1.08000 * 120.66531 * 359.97438 * 18 17 16 48 48 H 0.96993 * 120.00287 * 179.97438 * 23 22 20 49 49 H 1.08003 * 120.43177 * 179.72041 * 28 19 18 50 50 H 1.08003 * 119.36721 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 1.2428 5 1 1.3065 -1.4458 1.6211 6 7 2.4565 0.1988 2.2904 7 6 2.9613 -0.5132 3.4845 8 6 2.5474 0.3167 4.7139 9 6 1.7557 1.5159 4.1435 10 6 1.2958 0.9996 2.7569 11 6 3.2877 -1.5141 0.6925 12 6 2.8146 -1.8794 -0.7367 13 7 2.0301 -0.7140 -1.1838 14 6 1.8072 -0.3622 -2.4657 15 8 1.1417 0.6233 -2.7186 16 7 2.3223 -1.1027 -3.4670 17 6 2.0171 -0.7925 -4.7920 18 6 2.4442 -1.6325 -5.8089 19 6 2.1202 -1.3022 -7.1390 20 6 2.5269 -2.1274 -8.2148 21 1 2.5832 -1.7226 -9.2144 22 6 2.8561 -3.4685 -7.9828 23 7 2.5316 -4.0348 -6.8500 24 14 3.7589 -4.4484 -9.2920 25 1 4.0092 -3.5837 -10.4730 26 1 5.0543 -4.9275 -8.7465 27 1 2.9315 -5.6131 -9.6972 28 6 1.3825 -0.1206 -7.3677 29 6 1.0097 0.6473 -6.3013 30 7 1.3268 0.3047 -5.0659 31 1 -0.3634 0.4967 0.8996 32 1 -0.3634 0.5307 -0.8800 33 1 -0.3633 -1.0275 -0.0197 34 1 4.0475 -0.5919 3.4382 35 1 2.5163 -1.5066 3.5401 36 1 1.9136 -0.2754 5.3740 37 1 3.4302 0.6663 5.2490 38 1 0.8967 1.7459 4.7738 39 1 2.4009 2.3878 4.0358 40 1 0.4098 0.3722 2.8545 41 1 1.1031 1.8325 2.0807 42 1 4.1654 -0.8687 0.6605 43 1 3.4856 -2.4106 1.2801 44 1 3.6717 -2.0337 -1.3921 45 1 2.1903 -2.7726 -0.7130 46 1 2.9054 -1.8514 -3.2662 47 1 3.0111 -2.5241 -5.5852 48 1 2.7594 -4.9639 -6.6895 49 1 1.1167 0.1725 -8.3726 50 1 0.4456 1.5524 -6.4718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:09 Heat of formation + Delta-G solvation = 26.218961 kcal Electronic energy + Delta-G solvation = -30324.419084 eV Core-core repulsion = 26351.739384 eV Total energy + Delta-G solvation = -3972.679700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.50145 -39.28521 -38.12874 -36.72475 -34.30292 -33.78018 -32.50612 -31.51269 -30.48206 -29.59672 -28.99414 -28.05042 -25.98237 -25.37252 -23.18031 -22.11688 -21.86936 -21.41946 -20.74404 -20.31992 -19.10271 -17.86600 -17.52847 -16.87161 -16.21498 -15.82098 -15.33705 -15.16532 -14.58721 -14.44880 -14.23935 -14.14208 -13.88092 -13.83280 -13.48229 -13.11614 -12.92713 -12.88897 -12.80577 -12.58846 -12.38623 -12.36450 -11.91946 -11.69779 -11.57092 -11.43926 -11.40278 -11.31480 -11.15693 -11.01932 -10.89419 -10.87039 -10.61672 -10.25262 -10.07049 -9.72508 -9.45442 -9.35397 -8.72680 -8.37125 -7.95526 -7.68110 -6.95988 -6.75057 -4.60249 2.72569 2.82006 2.85968 3.01689 3.07291 3.27602 3.67691 3.84895 3.91331 4.11964 4.32604 4.36334 4.46048 4.61587 4.64591 4.71730 4.92336 4.97200 5.11768 5.17694 5.21680 5.32715 5.42328 5.45636 5.47426 5.50996 5.55338 5.61340 5.66442 5.74850 5.75742 5.78456 5.86791 5.90351 5.98076 6.11693 6.34422 6.48764 6.56742 6.66292 6.71296 6.81689 6.87069 6.97615 7.18678 7.37982 7.50261 7.53943 7.89894 8.13014 8.41454 8.51088 8.76425 8.78075 9.24369 9.79178 10.07249 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002305 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.708320 B =12147.180450 C =13185.039244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.168 3.832 3 H 0.082 0.918 4 C 0.066 3.934 5 H 0.060 0.940 6 N -0.506 5.506 7 C 0.037 3.963 8 C -0.132 4.132 9 C -0.124 4.124 10 C 0.031 3.969 11 C -0.121 4.121 12 C 0.099 3.901 13 N -0.638 5.638 14 C 0.712 3.288 15 O -0.527 6.527 16 N -0.666 5.666 17 C 0.355 3.645 18 C -0.251 4.251 19 C 0.141 3.859 20 C -0.450 4.450 21 H 0.082 0.918 22 C 0.075 3.925 23 N -0.789 5.789 24 Si 0.913 3.087 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.274 1.274 28 C -0.286 4.286 29 C 0.120 3.880 30 N -0.554 5.554 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.402 0.598 47 H 0.136 0.864 48 H 0.280 0.720 49 H 0.101 0.899 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 0.597 21.018 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 H 0.100 0.900 4 C -0.043 4.043 5 H 0.078 0.922 6 N -0.231 5.231 7 C -0.090 4.090 8 C -0.170 4.170 9 C -0.162 4.162 10 C -0.097 4.097 11 C -0.160 4.160 12 C -0.025 4.025 13 N -0.380 5.380 14 C 0.414 3.586 15 O -0.398 6.398 16 N -0.313 5.313 17 C 0.130 3.870 18 C -0.277 4.277 19 C 0.132 3.868 20 C -0.481 4.481 21 H 0.100 0.900 22 C -0.143 4.143 23 N -0.415 5.415 24 Si 0.737 3.263 25 H -0.183 1.183 26 H -0.197 1.197 27 H -0.199 1.199 28 C -0.310 4.310 29 C -0.034 4.034 30 N -0.273 5.273 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.237 0.763 47 H 0.153 0.847 48 H 0.091 0.909 49 H 0.119 0.881 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.669 2.023 21.368 21.528 hybrid contribution 0.308 -2.245 -0.806 2.405 sum 1.978 -0.222 20.562 20.658 Atomic orbital electron populations 1.22264 0.95112 1.02132 1.03006 1.21137 0.93759 0.96396 0.82402 0.90006 1.22924 0.96552 0.93010 0.91827 0.92222 1.64782 1.29046 1.21438 1.07819 1.22837 1.01071 0.95981 0.89149 1.22407 1.00419 0.96910 0.97252 1.22490 0.99863 0.98280 0.95589 1.23334 0.92263 0.97830 0.96236 1.22800 0.98109 1.00158 0.94884 1.22225 0.95379 0.89529 0.95381 1.47693 1.56743 1.29672 1.03862 1.15554 0.80923 0.83349 0.78780 1.90996 1.41666 1.26059 1.81062 1.42574 1.51237 1.33724 1.03807 1.17983 0.95243 0.91893 0.81928 1.21689 1.10809 1.03306 0.91850 1.17581 0.86784 0.90194 0.92230 1.19635 1.38954 0.94060 0.95434 0.89992 1.25980 0.93528 0.98383 0.96433 1.69768 1.34659 1.13132 1.23926 0.86185 0.79497 0.79405 0.81211 1.18292 1.19654 1.19898 1.21632 1.09497 1.01460 0.98413 1.21462 0.96787 0.97542 0.87589 1.67204 1.20296 1.17451 1.22351 0.92222 0.90376 0.92894 0.90203 0.93717 0.91612 0.90993 0.91077 0.90627 0.93445 0.89564 0.89446 0.90259 0.90738 0.91640 0.76276 0.84691 0.90882 0.88121 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.00 37.16 0.33 -1.90 16 2 C 0.17 2.26 2.57 -66.96 -0.17 2.09 16 3 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 4 C 0.07 0.67 1.86 -65.88 -0.12 0.55 16 5 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 6 N -0.51 -4.76 5.07 -220.31 -1.12 -5.88 16 7 C 0.04 0.28 6.14 -2.75 -0.02 0.26 16 8 C -0.13 -0.83 6.93 -25.37 -0.18 -1.01 16 9 C -0.12 -0.85 7.06 -24.86 -0.18 -1.03 16 10 C 0.03 0.26 4.84 -1.89 -0.01 0.25 16 11 C -0.12 -1.13 6.15 -24.58 -0.15 -1.28 16 12 C 0.10 1.14 6.61 -2.53 -0.02 1.12 16 13 N -0.64 -9.93 3.07 -168.70 -0.52 -10.45 16 14 C 0.71 14.72 8.24 -86.91 -0.72 14.01 16 15 O -0.53 -12.97 13.65 5.30 0.07 -12.90 16 16 N -0.67 -13.96 5.35 -15.86 -0.08 -14.04 16 17 C 0.36 8.95 7.42 -154.67 -1.15 7.80 16 18 C -0.25 -6.50 8.67 -38.45 -0.33 -6.83 16 19 C 0.14 3.75 5.64 -106.55 -0.60 3.15 16 20 C -0.45 -11.64 9.14 -37.65 -0.34 -11.99 16 21 H 0.08 2.03 7.89 -52.49 -0.41 1.62 16 22 C 0.08 1.82 5.28 -17.35 -0.09 1.73 16 23 N -0.79 -19.41 10.60 55.55 0.59 -18.82 16 24 Si 0.91 17.94 29.58 -169.99 -5.03 12.91 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 26 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 C -0.29 -7.17 9.85 -39.07 -0.38 -7.55 16 29 C 0.12 2.97 11.10 -18.05 -0.20 2.77 16 30 N -0.55 -14.68 7.86 -12.76 -0.10 -14.78 16 31 H 0.06 0.65 6.25 -51.93 -0.32 0.32 16 32 H 0.08 1.32 6.90 -51.93 -0.36 0.96 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.04 0.32 7.70 -51.93 -0.40 -0.08 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.39 7.36 -51.93 -0.38 0.01 16 41 H 0.09 0.80 7.89 -51.93 -0.41 0.39 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.81 7.23 -51.93 -0.38 0.43 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.40 7.11 7.15 -40.82 -0.29 6.82 16 47 H 0.14 3.46 5.89 -52.49 -0.31 3.15 16 48 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 49 H 0.10 2.31 8.06 -52.48 -0.42 1.88 16 50 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 LS Contribution 390.61 15.07 5.89 5.89 Total: -1.00 -31.91 390.61 -12.49 -44.40 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -7.86 Total: 11.53 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -4.32 Total: 2.14 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -1.23 Total: -63.97 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.91 -12.49 -44.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.617 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds