Wall clock time and date at job start Wed Apr 1 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.99508 * 2 1 4 4 C 1.54323 * 109.88315 * 121.09219 * 2 1 3 5 5 H 1.09001 * 110.87225 * 23.17998 * 4 2 1 6 6 N 1.46900 * 110.72187 * 259.97710 * 4 2 1 7 7 C 1.47901 * 111.00179 * 180.02562 * 6 4 2 8 8 C 1.53994 * 107.06227 * 214.15535 * 7 6 4 9 9 C 1.54602 * 105.13545 * 1.22673 * 8 7 6 10 10 C 1.48536 * 110.99823 * 62.62657 * 6 4 2 11 11 C 1.55159 * 102.94316 * 141.61386 * 4 2 1 12 12 C 1.54912 * 101.57987 * 324.49917 * 11 4 2 13 13 N 1.47017 * 109.88477 * 238.90347 * 2 1 3 14 14 C 1.34782 * 125.64768 * 61.59128 * 13 2 1 15 15 O 1.21577 * 119.99903 * 0.03565 * 14 13 2 16 16 N 1.34775 * 119.99698 * 180.02562 * 14 13 2 17 17 C 1.39462 * 119.99678 * 175.63162 * 16 14 13 18 18 C 1.38643 * 119.64462 * 186.17457 * 17 16 14 19 19 C 1.40828 * 118.67140 * 179.76376 * 18 17 16 20 20 C 1.41549 * 120.99531 * 180.23948 * 19 18 17 21 21 H 1.07997 * 119.99240 * 201.08377 * 20 19 18 22 22 C 1.40021 * 120.00100 * 21.07994 * 20 19 18 23 23 N 1.30742 * 120.00428 * 14.12426 * 22 20 19 24 24 Si 1.86800 * 119.99805 * 194.11910 * 22 20 19 25 25 H 1.48500 * 109.47272 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47196 * 120.00345 * 24 22 20 27 27 H 1.48504 * 109.47381 * 240.00103 * 24 22 20 28 28 C 1.41165 * 118.00384 * 0.49604 * 19 18 17 29 29 C 1.36590 * 119.12649 * 359.73864 * 28 19 18 30 30 N 1.32062 * 121.26208 * 0.02562 * 29 28 19 31 31 H 1.08997 * 109.47445 * 298.90467 * 1 2 3 32 32 H 1.09003 * 109.47422 * 58.90687 * 1 2 3 33 33 H 1.09004 * 109.47100 * 178.90393 * 1 2 3 34 34 H 1.09003 * 109.91413 * 94.80273 * 7 6 4 35 35 H 1.09001 * 109.91456 * 333.51243 * 7 6 4 36 36 H 1.08997 * 110.30476 * 120.13771 * 8 7 6 37 37 H 1.08995 * 110.30852 * 242.31276 * 8 7 6 38 38 H 1.09000 * 110.72109 * 140.31421 * 9 8 7 39 39 H 1.08999 * 110.72203 * 263.59512 * 9 8 7 40 40 H 1.09004 * 110.66726 * 41.28710 * 10 6 4 41 41 H 1.08998 * 110.81205 * 278.22171 * 10 6 4 42 42 H 1.08992 * 111.00238 * 82.57395 * 11 4 2 43 43 H 1.08997 * 111.00407 * 206.39236 * 11 4 2 44 44 H 1.08991 * 110.36657 * 155.84786 * 12 11 4 45 45 H 1.09001 * 110.37028 * 278.06250 * 12 11 4 46 46 H 0.96998 * 120.00476 * 355.62718 * 16 14 13 47 47 H 1.08000 * 120.66531 * 359.97438 * 18 17 16 48 48 H 0.96993 * 120.00287 * 179.97438 * 23 22 20 49 49 H 1.08003 * 120.43177 * 179.72041 * 28 19 18 50 50 H 1.08003 * 119.36721 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 1.2428 5 1 1.3065 -1.4458 1.6211 6 7 2.4565 0.1988 2.2904 7 6 2.9613 -0.5132 3.4845 8 6 2.5474 0.3167 4.7139 9 6 1.7557 1.5159 4.1435 10 6 1.2958 0.9996 2.7569 11 6 3.2877 -1.5141 0.6925 12 6 2.8146 -1.8794 -0.7367 13 7 2.0301 -0.7140 -1.1838 14 6 1.8072 -0.3622 -2.4657 15 8 1.1417 0.6233 -2.7186 16 7 2.3223 -1.1027 -3.4670 17 6 2.0171 -0.7925 -4.7920 18 6 2.4442 -1.6325 -5.8089 19 6 2.1202 -1.3022 -7.1390 20 6 2.5269 -2.1274 -8.2148 21 1 2.5832 -1.7226 -9.2144 22 6 2.8561 -3.4685 -7.9828 23 7 2.5316 -4.0348 -6.8500 24 14 3.7589 -4.4484 -9.2920 25 1 4.0092 -3.5837 -10.4730 26 1 5.0543 -4.9275 -8.7465 27 1 2.9315 -5.6131 -9.6972 28 6 1.3825 -0.1206 -7.3677 29 6 1.0097 0.6473 -6.3013 30 7 1.3268 0.3047 -5.0659 31 1 -0.3634 0.4967 0.8996 32 1 -0.3634 0.5307 -0.8800 33 1 -0.3633 -1.0275 -0.0197 34 1 4.0475 -0.5919 3.4382 35 1 2.5163 -1.5066 3.5401 36 1 1.9136 -0.2754 5.3740 37 1 3.4302 0.6663 5.2490 38 1 0.8967 1.7459 4.7738 39 1 2.4009 2.3878 4.0358 40 1 0.4098 0.3722 2.8545 41 1 1.1031 1.8325 2.0807 42 1 4.1654 -0.8687 0.6605 43 1 3.4856 -2.4106 1.2801 44 1 3.6717 -2.0337 -1.3921 45 1 2.1903 -2.7726 -0.7130 46 1 2.9054 -1.8514 -3.2662 47 1 3.0111 -2.5241 -5.5852 48 1 2.7594 -4.9639 -6.6895 49 1 1.1167 0.1725 -8.3726 50 1 0.4456 1.5524 -6.4718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871732168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:08 Heat of formation + Delta-G solvation = 6.981275 kcal Electronic energy + Delta-G solvation = -30325.253293 eV Core-core repulsion = 26351.739384 eV Total energy + Delta-G solvation = -3973.513909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.77661 -40.60480 -39.59800 -37.93903 -36.13729 -35.57057 -33.50097 -32.53467 -32.40121 -30.84103 -29.66252 -29.54455 -27.92592 -26.31028 -24.55167 -23.78058 -23.10741 -22.46968 -21.76748 -21.15780 -20.59565 -19.48837 -19.07221 -17.89231 -17.56835 -16.98936 -16.78086 -16.52483 -16.06873 -16.01753 -15.84504 -15.36495 -14.97817 -14.75139 -14.67430 -14.54542 -14.36132 -14.24142 -14.13689 -13.73887 -13.57637 -13.22760 -13.15028 -13.02771 -12.87210 -12.67997 -12.56985 -12.22333 -12.16427 -12.05489 -11.96868 -11.88235 -11.83332 -11.62258 -11.51276 -11.37438 -11.18110 -11.16166 -9.94670 -9.69288 -9.61327 -9.40009 -8.82513 -8.60453 -6.57270 0.84216 1.00755 1.41730 1.45889 1.56046 1.58274 2.20334 2.25117 2.82920 2.84762 3.01007 3.33973 3.55173 3.75969 3.78461 3.96046 4.01237 4.12490 4.13539 4.22416 4.30218 4.36344 4.38228 4.50989 4.57896 4.61863 4.69403 4.70642 4.77505 4.85093 4.90789 4.93679 4.96970 4.99765 5.01792 5.09551 5.11052 5.14933 5.18773 5.25594 5.26799 5.35377 5.40855 5.51699 5.66191 5.87194 5.93782 5.99754 6.09284 6.24471 6.56126 6.79806 6.82770 6.89516 7.58224 7.91203 8.26356 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002305 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.708320 B =12147.180450 C =13185.039244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 H 0.058 0.942 4 C 0.079 3.921 5 H 0.073 0.927 6 N -0.521 5.521 7 C 0.036 3.964 8 C -0.128 4.128 9 C -0.122 4.122 10 C 0.027 3.973 11 C -0.108 4.108 12 C 0.089 3.911 13 N -0.633 5.633 14 C 0.707 3.293 15 O -0.575 6.575 16 N -0.659 5.659 17 C 0.352 3.648 18 C -0.267 4.267 19 C 0.111 3.889 20 C -0.477 4.477 21 H 0.084 0.916 22 C 0.036 3.964 23 N -0.810 5.810 24 Si 0.991 3.009 25 H -0.259 1.259 26 H -0.261 1.261 27 H -0.265 1.265 28 C -0.299 4.299 29 C 0.113 3.887 30 N -0.582 5.582 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.416 0.584 47 H 0.134 0.866 48 H 0.292 0.708 49 H 0.116 0.884 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -1.490 22.632 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.076 0.924 4 C -0.031 4.031 5 H 0.091 0.909 6 N -0.246 5.246 7 C -0.091 4.091 8 C -0.166 4.166 9 C -0.160 4.160 10 C -0.101 4.101 11 C -0.147 4.147 12 C -0.033 4.033 13 N -0.373 5.373 14 C 0.408 3.592 15 O -0.449 6.449 16 N -0.308 5.308 17 C 0.125 3.875 18 C -0.293 4.293 19 C 0.103 3.897 20 C -0.507 4.507 21 H 0.102 0.898 22 C -0.181 4.181 23 N -0.435 5.435 24 Si 0.811 3.189 25 H -0.182 1.182 26 H -0.185 1.185 27 H -0.190 1.190 28 C -0.323 4.323 29 C -0.040 4.040 30 N -0.302 5.302 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.253 0.747 47 H 0.151 0.849 48 H 0.104 0.896 49 H 0.134 0.866 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.779 -0.091 23.058 23.225 hybrid contribution -0.055 -1.593 -1.239 2.019 sum 2.724 -1.685 21.819 22.053 Atomic orbital electron populations 1.22162 0.95173 1.01991 1.02269 1.21284 0.93765 0.95751 0.83236 0.92369 1.22789 0.97085 0.92740 0.90451 0.90940 1.64760 1.29470 1.21722 1.08654 1.22906 1.01259 0.96399 0.88538 1.22410 1.00797 0.96468 0.96947 1.22480 1.00359 0.98352 0.94779 1.23350 0.92370 0.97444 0.96896 1.22781 0.97215 1.01240 0.93419 1.22577 0.95418 0.88380 0.96940 1.47679 1.56294 1.30762 1.02546 1.15725 0.80550 0.82807 0.80088 1.90954 1.43631 1.28037 1.82279 1.42451 1.51415 1.34211 1.02723 1.18197 0.94506 0.91372 0.83453 1.21670 1.11882 1.03678 0.92073 1.18028 0.87451 0.91190 0.93064 1.19925 1.40152 0.95249 0.95409 0.89751 1.26876 0.93579 0.98762 0.98847 1.69791 1.34217 1.14132 1.25410 0.85027 0.78281 0.77619 0.78002 1.18203 1.18520 1.19007 1.21813 1.09772 1.01406 0.99267 1.21896 0.96555 0.98278 0.87267 1.67320 1.21429 1.18348 1.23127 0.89711 0.94455 0.92447 0.89867 0.92733 0.90447 0.90303 0.89799 0.91269 0.92931 0.91150 0.90025 0.86925 0.90077 0.90094 0.74666 0.84887 0.89643 0.86609 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 9.00 71.98 0.65 -3.65 16 2 C 0.16 4.42 2.57 45.34 0.12 4.54 16 3 H 0.06 1.85 7.90 -2.39 -0.02 1.83 16 4 C 0.08 1.44 1.86 46.10 0.09 1.53 16 5 H 0.07 1.18 7.75 -2.39 -0.02 1.17 16 6 N -0.52 -8.87 5.07 -850.91 -4.31 -13.18 16 7 C 0.04 0.44 6.14 86.45 0.53 0.97 16 8 C -0.13 -1.26 6.93 31.48 0.22 -1.05 16 9 C -0.12 -1.45 7.06 31.80 0.22 -1.23 16 10 C 0.03 0.42 4.84 86.65 0.42 0.84 16 11 C -0.11 -1.73 6.15 31.99 0.20 -1.53 16 12 C 0.09 1.90 6.61 86.86 0.57 2.48 16 13 N -0.63 -19.79 3.07 -805.90 -2.47 -22.26 16 14 C 0.71 30.15 8.24 179.05 1.48 31.62 16 15 O -0.57 -29.67 13.65 -3.96 -0.05 -29.72 16 16 N -0.66 -28.34 5.35 -322.37 -1.72 -30.07 16 17 C 0.35 18.28 7.42 132.76 0.98 19.27 16 18 C -0.27 -14.23 8.67 23.00 0.20 -14.03 16 19 C 0.11 6.08 5.64 -21.11 -0.12 5.96 16 20 C -0.48 -24.95 9.14 23.52 0.22 -24.74 16 21 H 0.08 4.22 7.89 -2.91 -0.02 4.20 16 22 C 0.04 1.73 5.28 85.29 0.45 2.18 16 23 N -0.81 -39.61 10.60 21.84 0.23 -39.38 16 24 Si 0.99 35.84 29.58 68.60 2.03 37.87 16 25 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 26 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 27 H -0.27 -9.21 7.11 99.48 0.71 -8.51 16 28 C -0.30 -15.34 9.85 22.60 0.22 -15.12 16 29 C 0.11 5.76 11.10 84.27 0.94 6.69 16 30 N -0.58 -31.92 7.86 -194.27 -1.53 -33.45 16 31 H 0.08 1.82 6.25 -2.39 -0.01 1.80 16 32 H 0.04 1.32 6.90 -2.39 -0.02 1.31 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.56 7.70 -2.39 -0.02 0.55 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 0.77 7.36 -2.39 -0.02 0.75 16 41 H 0.07 1.31 7.89 -2.39 -0.02 1.30 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.63 7.23 -2.39 -0.02 1.62 16 45 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.42 14.86 7.15 -92.71 -0.66 14.20 16 47 H 0.13 6.99 5.89 -2.91 -0.02 6.97 16 48 H 0.29 12.64 8.29 -92.71 -0.77 11.87 16 49 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 50 H 0.15 6.43 8.06 -2.91 -0.02 6.40 16 Total: -1.00 -71.88 390.61 -0.16 -72.05 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: 0.29 Total: 43.40 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 7.38 Total: 14.74 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -9.80 Total: -138.32 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -71.88 -0.16 -72.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.027 kcal (2) G-P(sol) polarization free energy of solvation -71.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds