Wall clock time and date at job start Wed Apr 1 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.99648 * 2 1 4 4 C 1.54343 * 109.77735 * 121.16359 * 2 1 3 5 5 C 1.55152 * 103.01764 * 97.49919 * 4 2 1 6 6 H 1.08998 * 111.00394 * 277.22577 * 5 4 2 7 7 N 1.46900 * 111.03469 * 153.39783 * 5 4 2 8 8 C 1.48529 * 111.00559 * 63.93189 * 7 5 4 9 9 C 1.54936 * 103.23010 * 159.72088 * 8 7 5 10 10 C 1.54593 * 102.92241 * 322.58645 * 9 8 7 11 11 C 1.47907 * 111.00011 * 181.32706 * 7 5 4 12 12 C 1.54905 * 101.58609 * 35.30430 * 5 4 2 13 13 N 1.47017 * 109.88182 * 238.90224 * 2 1 3 14 14 C 1.34776 * 125.65044 * 59.56329 * 13 2 1 15 15 O 1.21577 * 119.99891 * 359.71094 * 14 13 2 16 16 N 1.34774 * 120.00283 * 179.71745 * 14 13 2 17 17 C 1.39458 * 120.00091 * 185.95505 * 16 14 13 18 18 C 1.38642 * 119.65149 * 175.57343 * 17 16 14 19 19 C 1.40820 * 118.68013 * 179.97438 * 18 17 16 20 20 C 1.41540 * 121.00025 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00171 * 345.46496 * 20 19 18 22 22 C 1.40038 * 120.00089 * 165.46404 * 20 19 18 23 23 N 1.30745 * 119.99817 * 323.99478 * 22 20 19 24 24 Si 1.86798 * 119.99946 * 143.99525 * 22 20 19 25 25 H 1.48497 * 109.46926 * 94.99515 * 24 22 20 26 26 H 1.48501 * 109.46869 * 214.99289 * 24 22 20 27 27 H 1.48490 * 109.47021 * 334.99243 * 24 22 20 28 28 C 1.41164 * 117.99973 * 359.97438 * 19 18 17 29 29 C 1.36590 * 119.13051 * 0.02562 * 28 19 18 30 30 N 1.32070 * 121.25738 * 359.73913 * 29 28 19 31 31 H 1.09000 * 109.47531 * 179.64349 * 1 2 3 32 32 H 1.09005 * 109.47466 * 299.64328 * 1 2 3 33 33 H 1.08999 * 109.47047 * 59.64393 * 1 2 3 34 34 H 1.08992 * 110.84972 * 339.02664 * 4 2 1 35 35 H 1.09004 * 110.66251 * 215.87626 * 4 2 1 36 36 H 1.09004 * 110.66861 * 278.15893 * 8 7 5 37 37 H 1.09000 * 110.66347 * 41.28186 * 8 7 5 38 38 H 1.08997 * 110.72109 * 204.22683 * 9 8 7 39 39 H 1.09002 * 110.87506 * 81.01819 * 9 8 7 40 40 H 1.09004 * 110.30923 * 263.04294 * 10 9 8 41 41 H 1.08995 * 110.39376 * 140.91600 * 10 9 8 42 42 H 1.08997 * 109.91456 * 333.50700 * 11 7 5 43 43 H 1.09005 * 109.91307 * 94.60203 * 11 7 5 44 44 H 1.09005 * 110.36647 * 204.15023 * 12 5 4 45 45 H 1.09005 * 110.36480 * 81.82797 * 12 5 4 46 46 H 0.96997 * 119.99877 * 5.94695 * 16 14 13 47 47 H 1.08002 * 120.66266 * 359.95437 * 18 17 16 48 48 H 0.96996 * 119.99994 * 179.97438 * 23 22 20 49 49 H 1.08003 * 120.43114 * 180.02562 * 28 19 18 50 50 H 1.08003 * 119.36940 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7516 1.2428 5 6 2.3561 -2.1697 0.6915 6 1 1.4522 -2.7778 0.6580 7 7 3.4025 -2.8301 1.4833 8 6 2.9501 -3.0568 2.8798 9 6 3.8964 -4.1762 3.3817 10 6 4.0614 -5.0745 2.1344 11 6 3.7139 -4.1693 0.9381 12 6 2.8612 -1.8466 -0.7368 13 7 2.0299 -0.7141 -1.1839 14 6 1.7754 -0.3845 -2.4657 15 8 1.0729 0.5750 -2.7186 16 7 2.2993 -1.1187 -3.4671 17 6 2.1400 -0.7078 -4.7902 18 6 2.7592 -1.4169 -5.8080 19 6 2.5840 -0.9843 -7.1366 20 6 3.1931 -1.6719 -8.2134 21 1 3.9803 -2.3859 -8.0220 22 6 2.7747 -1.4264 -9.5271 23 7 1.5136 -1.1901 -9.7782 24 14 4.0186 -1.4365 -10.9207 25 1 4.0405 -2.7790 -11.5549 26 1 3.6376 -0.4176 -11.9316 27 1 5.3664 -1.1207 -10.3834 28 6 1.7819 0.1552 -7.3622 29 6 1.2121 0.7891 -6.2949 30 7 1.3940 0.3529 -5.0617 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3634 0.5083 0.8932 33 1 -0.3633 0.5193 -0.8868 34 1 1.2885 -0.7951 2.0192 35 1 2.9600 -0.2827 1.6225 36 1 3.0738 -2.1525 3.4758 37 1 1.9132 -3.3923 2.8986 38 1 3.4369 -4.7319 4.1991 39 1 4.8571 -3.7636 3.6898 40 1 3.3734 -5.9186 2.1824 41 1 5.0891 -5.4289 2.0548 42 1 2.8464 -4.5667 0.4113 43 1 4.5636 -4.1049 0.2582 44 1 2.7178 -2.7049 -1.3931 45 1 3.9123 -1.5588 -0.7114 46 1 2.7873 -1.9329 -3.2675 47 1 3.3640 -2.2838 -5.5863 48 1 1.2239 -1.0197 -10.6881 49 1 1.6209 0.5209 -8.3656 50 1 0.5973 1.6610 -6.4632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:39 Heat of formation + Delta-G solvation = 24.064995 kcal Electronic energy + Delta-G solvation = -30050.652125 eV Core-core repulsion = 26077.879022 eV Total energy + Delta-G solvation = -3972.773103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.50404 -39.28508 -38.19400 -36.83842 -34.48310 -33.66669 -32.58564 -31.57228 -30.70598 -29.28407 -28.79929 -28.12587 -25.99572 -25.82610 -23.31894 -22.30000 -21.68166 -21.39157 -20.75674 -20.30719 -19.05147 -18.03824 -17.64066 -16.75132 -16.22017 -15.82992 -15.31043 -15.16789 -15.00941 -14.37649 -14.29791 -14.19018 -13.99504 -13.71096 -13.44453 -13.37422 -12.99275 -12.92851 -12.77400 -12.52570 -12.50572 -12.24889 -11.94966 -11.87053 -11.67943 -11.50998 -11.49121 -11.28493 -11.16393 -11.01521 -10.92871 -10.89544 -10.72125 -10.45192 -10.06283 -9.69227 -9.46137 -9.14389 -8.80401 -8.42969 -8.11666 -7.61812 -7.07089 -6.93741 -4.56076 2.75046 2.78346 2.81822 3.00165 3.04574 3.30312 3.54903 3.80919 3.87000 4.08838 4.24889 4.34126 4.50079 4.54833 4.56930 4.61648 4.83568 4.91795 5.07111 5.14285 5.15999 5.29252 5.35104 5.41397 5.46721 5.47360 5.59459 5.62274 5.65590 5.68384 5.71210 5.76010 5.81678 5.86013 5.94330 6.10623 6.31808 6.49051 6.50131 6.65342 6.69254 6.74386 6.84020 6.87544 7.09345 7.34717 7.47573 7.56946 7.84910 8.08679 8.32718 8.49786 8.72434 8.77356 9.18645 9.82314 9.88335 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.002313 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.268419 B =12100.436105 C =13609.270623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.158 3.842 3 H 0.075 0.925 4 C -0.117 4.117 5 C 0.064 3.936 6 H 0.060 0.940 7 N -0.507 5.507 8 C 0.036 3.964 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.032 3.968 12 C 0.111 3.889 13 N -0.639 5.639 14 C 0.712 3.288 15 O -0.523 6.523 16 N -0.669 5.669 17 C 0.375 3.625 18 C -0.320 4.320 19 C 0.147 3.853 20 C -0.460 4.460 21 H 0.085 0.915 22 C 0.093 3.907 23 N -0.752 5.752 24 Si 0.899 3.101 25 H -0.268 1.268 26 H -0.272 1.272 27 H -0.256 1.256 28 C -0.249 4.249 29 C 0.114 3.886 30 N -0.563 5.563 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.400 0.600 47 H 0.098 0.902 48 H 0.286 0.714 49 H 0.115 0.885 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 -6.407 21.516 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.054 3.946 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.046 4.046 6 H 0.077 0.923 7 N -0.231 5.231 8 C -0.092 4.092 9 C -0.162 4.162 10 C -0.170 4.170 11 C -0.096 4.096 12 C -0.014 4.014 13 N -0.381 5.381 14 C 0.413 3.587 15 O -0.393 6.393 16 N -0.317 5.317 17 C 0.147 3.853 18 C -0.347 4.347 19 C 0.139 3.861 20 C -0.489 4.489 21 H 0.103 0.897 22 C -0.132 4.132 23 N -0.374 5.374 24 Si 0.721 3.279 25 H -0.193 1.193 26 H -0.197 1.197 27 H -0.179 1.179 28 C -0.272 4.272 29 C -0.036 4.036 30 N -0.283 5.283 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.235 0.765 47 H 0.116 0.884 48 H 0.097 0.903 49 H 0.132 0.868 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.835 -4.774 21.759 22.456 hybrid contribution 0.398 -1.594 -1.371 2.140 sum 3.233 -6.367 20.387 21.602 Atomic orbital electron populations 1.22185 0.94952 1.01990 1.03081 1.21272 0.94451 0.96011 0.82905 0.90730 1.22757 1.01955 0.94150 0.96696 1.22930 0.92854 0.95569 0.93249 0.92264 1.64769 1.37666 1.18817 1.01884 1.23212 0.97167 0.99025 0.89758 1.22474 1.00206 0.96239 0.97263 1.22396 1.02255 0.97916 0.94396 1.22906 1.01110 0.88193 0.97382 1.22145 0.95863 0.89479 0.93876 1.47738 1.54377 1.31951 1.04018 1.15564 0.81078 0.83261 0.78754 1.91009 1.39188 1.28129 1.80944 1.42626 1.57753 1.27182 1.04103 1.17756 0.93812 0.92320 0.81419 1.20957 1.14985 1.06022 0.92704 1.17447 0.87747 0.89905 0.90955 1.19497 1.17805 1.21758 0.89871 0.89734 1.26028 0.94924 0.91428 1.00858 1.69927 1.15877 1.28340 1.23248 0.86465 0.82534 0.79046 0.79812 1.19321 1.19700 1.17917 1.21713 1.06817 0.99721 0.98994 1.21520 0.96932 0.97575 0.87577 1.67226 1.22537 1.15899 1.22619 0.93021 0.92178 0.90407 0.90206 0.89583 0.89816 0.93677 0.91129 0.90644 0.91560 0.90877 0.93540 0.89910 0.91491 0.90534 0.76516 0.88355 0.90255 0.86752 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.05 37.16 0.34 -1.73 16 2 C 0.16 1.98 3.51 -66.95 -0.23 1.74 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.12 -1.06 5.46 -24.89 -0.14 -1.19 16 5 C 0.06 0.59 2.37 -65.57 -0.16 0.43 16 6 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 7 N -0.51 -4.21 5.15 -219.95 -1.13 -5.34 16 8 C 0.04 0.24 5.96 -1.90 -0.01 0.23 16 9 C -0.12 -0.72 7.06 -24.87 -0.18 -0.90 16 10 C -0.13 -0.81 6.93 -25.38 -0.18 -0.98 16 11 C 0.03 0.24 6.15 -2.75 -0.02 0.22 16 12 C 0.11 1.25 5.72 -2.53 -0.01 1.23 16 13 N -0.64 -9.49 3.08 -168.68 -0.52 -10.01 16 14 C 0.71 14.23 8.23 -86.92 -0.72 13.52 16 15 O -0.52 -12.63 13.49 5.30 0.07 -12.56 16 16 N -0.67 -13.40 5.34 -15.87 -0.08 -13.49 16 17 C 0.38 9.22 7.42 -154.68 -1.15 8.07 16 18 C -0.32 -7.95 9.74 -38.46 -0.37 -8.32 16 19 C 0.15 3.95 5.66 -106.55 -0.60 3.34 16 20 C -0.46 -11.89 9.01 -37.65 -0.34 -12.23 16 21 H 0.08 2.08 8.04 -52.49 -0.42 1.66 16 22 C 0.09 2.24 4.82 -17.34 -0.08 2.15 16 23 N -0.75 -18.69 11.61 55.55 0.65 -18.05 16 24 Si 0.90 17.68 29.68 -169.99 -5.04 12.64 16 25 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 28 C -0.25 -6.60 8.90 -39.07 -0.35 -6.95 16 29 C 0.11 2.95 11.10 -18.04 -0.20 2.75 16 30 N -0.56 -15.01 7.86 -12.76 -0.10 -15.11 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.27 6.73 -51.93 -0.35 0.92 16 34 H 0.08 0.60 7.83 -51.93 -0.41 0.19 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.04 0.30 8.02 -51.93 -0.42 -0.11 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.36 7.72 -51.93 -0.40 -0.04 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.71 7.21 -51.93 -0.37 0.34 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.40 6.52 7.15 -40.82 -0.29 6.23 16 47 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 48 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 49 H 0.11 3.02 6.30 -52.48 -0.33 2.69 16 50 H 0.12 2.78 8.06 -52.48 -0.42 2.36 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -32.02 395.59 -12.64 -44.66 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.04 Total: 9.90 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -4.40 Total: 1.40 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -1.19 Total: -62.00 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.56 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.04 Total: 12.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.02 -12.64 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.722 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds