Wall clock time and date at job start Wed Apr 1 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.99648 * 2 1 4 4 C 1.54343 * 109.77735 * 121.16359 * 2 1 3 5 5 C 1.55152 * 103.01764 * 97.49919 * 4 2 1 6 6 H 1.08998 * 111.00394 * 277.22577 * 5 4 2 7 7 N 1.46900 * 111.03469 * 153.39783 * 5 4 2 8 8 C 1.48529 * 111.00559 * 63.93189 * 7 5 4 9 9 C 1.54936 * 103.23010 * 159.72088 * 8 7 5 10 10 C 1.54593 * 102.92241 * 322.58645 * 9 8 7 11 11 C 1.47907 * 111.00011 * 181.32706 * 7 5 4 12 12 C 1.54905 * 101.58609 * 35.30430 * 5 4 2 13 13 N 1.47017 * 109.88182 * 238.90224 * 2 1 3 14 14 C 1.34776 * 125.65044 * 59.56329 * 13 2 1 15 15 O 1.21577 * 119.99891 * 359.71094 * 14 13 2 16 16 N 1.34774 * 120.00283 * 179.71745 * 14 13 2 17 17 C 1.39458 * 120.00091 * 185.95505 * 16 14 13 18 18 C 1.38642 * 119.65149 * 175.57343 * 17 16 14 19 19 C 1.40820 * 118.68013 * 179.97438 * 18 17 16 20 20 C 1.41540 * 121.00025 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00171 * 345.46496 * 20 19 18 22 22 C 1.40038 * 120.00089 * 165.46404 * 20 19 18 23 23 N 1.30745 * 119.99817 * 323.99478 * 22 20 19 24 24 Si 1.86798 * 119.99946 * 143.99525 * 22 20 19 25 25 H 1.48497 * 109.46926 * 94.99515 * 24 22 20 26 26 H 1.48501 * 109.46869 * 214.99289 * 24 22 20 27 27 H 1.48490 * 109.47021 * 334.99243 * 24 22 20 28 28 C 1.41164 * 117.99973 * 359.97438 * 19 18 17 29 29 C 1.36590 * 119.13051 * 0.02562 * 28 19 18 30 30 N 1.32070 * 121.25738 * 359.73913 * 29 28 19 31 31 H 1.09000 * 109.47531 * 179.64349 * 1 2 3 32 32 H 1.09005 * 109.47466 * 299.64328 * 1 2 3 33 33 H 1.08999 * 109.47047 * 59.64393 * 1 2 3 34 34 H 1.08992 * 110.84972 * 339.02664 * 4 2 1 35 35 H 1.09004 * 110.66251 * 215.87626 * 4 2 1 36 36 H 1.09004 * 110.66861 * 278.15893 * 8 7 5 37 37 H 1.09000 * 110.66347 * 41.28186 * 8 7 5 38 38 H 1.08997 * 110.72109 * 204.22683 * 9 8 7 39 39 H 1.09002 * 110.87506 * 81.01819 * 9 8 7 40 40 H 1.09004 * 110.30923 * 263.04294 * 10 9 8 41 41 H 1.08995 * 110.39376 * 140.91600 * 10 9 8 42 42 H 1.08997 * 109.91456 * 333.50700 * 11 7 5 43 43 H 1.09005 * 109.91307 * 94.60203 * 11 7 5 44 44 H 1.09005 * 110.36647 * 204.15023 * 12 5 4 45 45 H 1.09005 * 110.36480 * 81.82797 * 12 5 4 46 46 H 0.96997 * 119.99877 * 5.94695 * 16 14 13 47 47 H 1.08002 * 120.66266 * 359.95437 * 18 17 16 48 48 H 0.96996 * 119.99994 * 179.97438 * 23 22 20 49 49 H 1.08003 * 120.43114 * 180.02562 * 28 19 18 50 50 H 1.08003 * 119.36940 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7516 1.2428 5 6 2.3561 -2.1697 0.6915 6 1 1.4522 -2.7778 0.6580 7 7 3.4025 -2.8301 1.4833 8 6 2.9501 -3.0568 2.8798 9 6 3.8964 -4.1762 3.3817 10 6 4.0614 -5.0745 2.1344 11 6 3.7139 -4.1693 0.9381 12 6 2.8612 -1.8466 -0.7368 13 7 2.0299 -0.7141 -1.1839 14 6 1.7754 -0.3845 -2.4657 15 8 1.0729 0.5750 -2.7186 16 7 2.2993 -1.1187 -3.4671 17 6 2.1400 -0.7078 -4.7902 18 6 2.7592 -1.4169 -5.8080 19 6 2.5840 -0.9843 -7.1366 20 6 3.1931 -1.6719 -8.2134 21 1 3.9803 -2.3859 -8.0220 22 6 2.7747 -1.4264 -9.5271 23 7 1.5136 -1.1901 -9.7782 24 14 4.0186 -1.4365 -10.9207 25 1 4.0405 -2.7790 -11.5549 26 1 3.6376 -0.4176 -11.9316 27 1 5.3664 -1.1207 -10.3834 28 6 1.7819 0.1552 -7.3622 29 6 1.2121 0.7891 -6.2949 30 7 1.3940 0.3529 -5.0617 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3634 0.5083 0.8932 33 1 -0.3633 0.5193 -0.8868 34 1 1.2885 -0.7951 2.0192 35 1 2.9600 -0.2827 1.6225 36 1 3.0738 -2.1525 3.4758 37 1 1.9132 -3.3923 2.8986 38 1 3.4369 -4.7319 4.1991 39 1 4.8571 -3.7636 3.6898 40 1 3.3734 -5.9186 2.1824 41 1 5.0891 -5.4289 2.0548 42 1 2.8464 -4.5667 0.4113 43 1 4.5636 -4.1049 0.2582 44 1 2.7178 -2.7049 -1.3931 45 1 3.9123 -1.5588 -0.7114 46 1 2.7873 -1.9329 -3.2675 47 1 3.3640 -2.2838 -5.5863 48 1 1.2239 -1.0197 -10.6881 49 1 1.6209 0.5209 -8.3656 50 1 0.5973 1.6610 -6.4632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871732275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:38 Heat of formation + Delta-G solvation = 4.892613 kcal Electronic energy + Delta-G solvation = -30051.483502 eV Core-core repulsion = 26077.879022 eV Total energy + Delta-G solvation = -3973.604480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.76932 -40.52253 -39.60166 -38.06679 -36.29348 -35.44470 -33.41426 -32.74642 -32.65532 -30.21980 -29.77615 -29.37137 -27.94033 -26.78001 -24.62309 -23.61478 -23.31214 -22.41896 -21.62266 -21.16443 -20.43023 -19.73732 -19.04261 -17.81053 -17.41865 -17.06258 -16.80292 -16.42180 -16.25661 -16.10911 -15.87495 -15.38294 -15.03569 -14.81125 -14.74267 -14.46444 -14.42340 -14.31730 -14.02266 -13.66213 -13.43235 -13.29552 -13.19569 -13.10500 -13.01057 -12.74651 -12.65249 -12.16930 -12.06310 -12.01368 -11.99278 -11.97695 -11.80318 -11.63412 -11.47643 -11.37162 -11.12639 -11.01801 -10.10715 -9.72034 -9.56492 -9.41776 -8.92525 -8.81173 -6.54040 0.84793 0.99073 1.38158 1.45554 1.50958 1.62802 2.15292 2.23650 2.68966 2.70226 3.12405 3.31963 3.58024 3.75566 3.78389 3.98637 4.00708 4.09589 4.11298 4.16926 4.33055 4.36760 4.42415 4.53188 4.63323 4.67715 4.70213 4.73475 4.82518 4.84971 4.88810 4.91487 4.95131 4.98908 5.02921 5.04419 5.08701 5.13810 5.17341 5.24802 5.30016 5.36071 5.46161 5.51190 5.62214 5.87332 5.89039 5.96752 6.06369 6.21026 6.49648 6.76186 6.79430 6.87868 7.57652 7.92548 8.07769 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.002313 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.268419 B =12100.436105 C =13609.270623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 H 0.063 0.937 4 C -0.101 4.101 5 C 0.074 3.926 6 H 0.060 0.940 7 N -0.513 5.513 8 C 0.034 3.966 9 C -0.121 4.121 10 C -0.130 4.130 11 C 0.028 3.972 12 C 0.106 3.894 13 N -0.632 5.632 14 C 0.707 3.293 15 O -0.571 6.571 16 N -0.660 5.660 17 C 0.374 3.626 18 C -0.332 4.332 19 C 0.119 3.881 20 C -0.483 4.483 21 H 0.090 0.910 22 C 0.053 3.947 23 N -0.780 5.780 24 Si 0.979 3.021 25 H -0.254 1.254 26 H -0.263 1.263 27 H -0.257 1.257 28 C -0.268 4.268 29 C 0.107 3.893 30 N -0.591 5.591 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.034 0.966 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.417 0.583 47 H 0.118 0.882 48 H 0.299 0.701 49 H 0.108 0.892 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -7.860 22.869 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 H 0.081 0.919 4 C -0.139 4.139 5 C -0.035 4.035 6 H 0.078 0.922 7 N -0.238 5.238 8 C -0.093 4.093 9 C -0.159 4.159 10 C -0.168 4.168 11 C -0.100 4.100 12 C -0.017 4.017 13 N -0.372 5.372 14 C 0.408 3.592 15 O -0.445 6.445 16 N -0.309 5.309 17 C 0.145 3.855 18 C -0.359 4.359 19 C 0.111 3.889 20 C -0.511 4.511 21 H 0.108 0.892 22 C -0.170 4.170 23 N -0.402 5.402 24 Si 0.798 3.202 25 H -0.179 1.179 26 H -0.187 1.187 27 H -0.181 1.181 28 C -0.291 4.291 29 C -0.043 4.043 30 N -0.312 5.312 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.255 0.745 47 H 0.136 0.864 48 H 0.110 0.890 49 H 0.126 0.874 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.107 -6.279 23.192 24.376 hybrid contribution -0.015 -1.192 -1.736 2.106 sum 4.092 -7.471 21.456 23.085 Atomic orbital electron populations 1.22104 0.94962 1.01929 1.02447 1.21544 0.94540 0.95994 0.83388 0.91877 1.22689 1.02847 0.93167 0.95179 1.22781 0.93028 0.95860 0.91876 0.92247 1.64773 1.37185 1.19247 1.02583 1.23299 0.97556 0.99781 0.88698 1.22476 1.00082 0.95927 0.97391 1.22397 1.02643 0.97859 0.93922 1.22955 1.00835 0.88213 0.98007 1.22361 0.95446 0.88327 0.95581 1.47696 1.53882 1.32802 1.02797 1.15734 0.80669 0.82717 0.80059 1.90973 1.41251 1.30112 1.82146 1.42478 1.57800 1.27856 1.02813 1.17993 0.92834 0.91565 0.83156 1.21128 1.15615 1.06807 0.92308 1.17848 0.88313 0.90489 0.92269 1.19826 1.18073 1.22316 0.90921 0.89185 1.26966 0.96697 0.90328 1.03013 1.69921 1.17711 1.27787 1.24795 0.85252 0.79085 0.79746 0.76094 1.17862 1.18750 1.18053 1.21688 1.08192 1.00510 0.98754 1.21798 0.96946 0.98034 0.87539 1.67324 1.23879 1.17198 1.22811 0.92659 0.89157 0.94678 0.87713 0.88843 0.89055 0.93330 0.89816 0.90736 0.91014 0.90508 0.93874 0.90301 0.90856 0.90209 0.74548 0.86418 0.88962 0.87430 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.05 71.98 0.65 -3.22 16 2 C 0.15 3.61 3.51 45.35 0.16 3.77 16 3 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.10 -1.55 5.46 31.79 0.17 -1.38 16 5 C 0.07 1.21 2.37 46.30 0.11 1.32 16 6 H 0.06 1.00 8.06 -2.39 -0.02 0.99 16 7 N -0.51 -7.26 5.15 -849.78 -4.37 -11.64 16 8 C 0.03 0.36 5.96 86.65 0.52 0.87 16 9 C -0.12 -1.08 7.06 31.80 0.22 -0.85 16 10 C -0.13 -1.31 6.93 31.47 0.22 -1.09 16 11 C 0.03 0.37 6.15 86.44 0.53 0.90 16 12 C 0.11 2.26 5.72 86.85 0.50 2.75 16 13 N -0.63 -18.63 3.08 -805.86 -2.48 -21.12 16 14 C 0.71 28.90 8.23 179.06 1.47 30.37 16 15 O -0.57 -28.74 13.49 -3.96 -0.05 -28.79 16 16 N -0.66 -26.86 5.34 -322.38 -1.72 -28.58 16 17 C 0.37 18.83 7.42 132.76 0.99 19.82 16 18 C -0.33 -16.82 9.74 23.00 0.22 -16.59 16 19 C 0.12 6.51 5.66 -21.12 -0.12 6.39 16 20 C -0.48 -25.16 9.01 23.52 0.21 -24.94 16 21 H 0.09 4.44 8.04 -2.91 -0.02 4.42 16 22 C 0.05 2.55 4.82 85.29 0.41 2.96 16 23 N -0.78 -38.90 11.61 21.84 0.25 -38.65 16 24 Si 0.98 35.53 29.68 68.60 2.04 37.57 16 25 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 26 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 27 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 28 C -0.27 -14.69 8.90 22.60 0.20 -14.49 16 29 C 0.11 5.73 11.10 84.27 0.94 6.66 16 30 N -0.59 -32.67 7.86 -194.27 -1.53 -34.19 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.03 1.18 6.73 -2.39 -0.02 1.16 16 34 H 0.10 1.16 7.83 -2.39 -0.02 1.14 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 37 H 0.05 0.50 8.02 -2.39 -0.02 0.48 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.04 0.60 7.72 -2.39 -0.02 0.58 16 43 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.07 1.47 7.21 -2.38 -0.02 1.46 16 45 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.42 13.52 7.15 -92.71 -0.66 12.86 16 47 H 0.12 5.30 8.06 -2.91 -0.02 5.27 16 48 H 0.30 13.13 8.29 -92.71 -0.77 12.36 16 49 H 0.11 5.90 6.30 -2.91 -0.02 5.88 16 50 H 0.14 6.53 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -71.80 395.59 -0.19 -71.98 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: 0.28 Total: 40.16 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 7.40 Total: 13.26 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -9.85 Total: -134.18 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.04 Total: 37.57 kcal Total: -71.80 -0.19 -71.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.877 kcal (2) G-P(sol) polarization free energy of solvation -71.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds