Wall clock time and date at job start Wed Apr 1 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.60773 * 2 1 4 4 C 1.53374 * 109.60931 * 239.48739 * 2 1 3 5 5 N 1.46969 * 108.63206 * 190.83005 * 4 2 1 6 6 C 1.34775 * 120.59141 * 235.20134 * 5 4 2 7 7 O 1.21581 * 120.00166 * 185.21894 * 6 5 4 8 8 N 1.34782 * 119.99991 * 5.22348 * 6 5 4 9 9 C 1.39396 * 119.99840 * 185.10833 * 8 6 5 10 10 C 1.39043 * 119.69780 * 174.79472 * 9 8 6 11 11 C 1.38343 * 119.10043 * 179.73393 * 10 9 8 12 12 C 1.50709 * 120.75011 * 180.24088 * 11 10 9 13 13 C 1.53001 * 117.49694 * 189.04104 * 12 11 10 14 14 C 1.53005 * 117.49877 * 120.38072 * 12 11 10 15 15 C 1.38846 * 118.49752 * 0.52632 * 11 10 9 16 16 C 1.38057 * 119.31099 * 359.73161 * 15 11 10 17 17 N 1.31939 * 120.84962 * 0.02562 * 16 15 11 18 18 C 1.46966 * 118.81352 * 55.22368 * 5 4 2 19 19 C 1.53369 * 108.63489 * 304.77186 * 18 5 4 20 20 H 1.09005 * 109.75286 * 169.25134 * 19 18 5 21 21 C 1.53001 * 109.61167 * 289.68102 * 19 18 5 22 22 N 1.46966 * 109.61149 * 120.33763 * 2 1 3 23 23 C 1.36933 * 120.59391 * 354.94819 * 22 2 1 24 24 H 1.08007 * 120.00090 * 31.95998 * 23 22 2 25 25 C 1.38808 * 120.00241 * 211.95477 * 23 22 2 26 26 N 1.31621 * 119.99877 * 9.98467 * 25 23 22 27 27 Si 1.86806 * 120.00164 * 189.98727 * 25 23 22 28 28 H 1.48500 * 109.46798 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.46914 * 119.99921 * 27 25 23 30 30 H 1.48502 * 109.46860 * 239.99666 * 27 25 23 31 31 H 1.09000 * 109.46733 * 299.65577 * 1 2 3 32 32 H 1.08996 * 109.46981 * 59.66205 * 1 2 3 33 33 H 1.08996 * 109.46710 * 179.66217 * 1 2 3 34 34 H 1.08996 * 109.60720 * 310.56698 * 4 2 1 35 35 H 1.08998 * 109.60853 * 71.08722 * 4 2 1 36 36 H 0.96998 * 120.00121 * 5.10095 * 8 6 5 37 37 H 1.08003 * 120.44421 * 359.97438 * 10 9 8 38 38 H 1.08995 * 115.54963 * 334.70868 * 12 11 10 39 39 H 1.09004 * 117.50023 * 359.97438 * 13 12 11 40 40 H 1.08994 * 117.49571 * 145.02011 * 13 12 11 41 41 H 1.08997 * 117.49980 * 214.97727 * 14 12 11 42 42 H 1.09003 * 117.49552 * 359.97438 * 14 12 11 43 43 H 1.08001 * 120.34643 * 179.71554 * 15 11 10 44 44 H 1.08009 * 119.57627 * 179.97438 * 16 15 11 45 45 H 1.09000 * 109.60594 * 185.03064 * 18 5 4 46 46 H 1.09003 * 109.60876 * 64.51772 * 18 5 4 47 47 H 1.09001 * 109.47017 * 179.14664 * 21 19 18 48 48 H 1.09002 * 109.47137 * 299.14418 * 21 19 18 49 49 H 1.08999 * 109.46983 * 59.14337 * 21 19 18 50 50 H 0.97006 * 120.00144 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7336 -1.2447 5 7 3.4909 -0.9505 -1.0974 6 6 4.3492 -0.5163 -2.0414 7 8 5.5322 -0.7838 -1.9567 8 7 3.8962 0.2144 -3.0794 9 6 4.7632 0.5731 -4.1103 10 6 4.2672 1.2326 -5.2294 11 6 5.1396 1.5877 -6.2427 12 6 4.6431 2.3083 -7.4697 13 6 5.6214 2.4779 -8.6337 14 6 5.2409 3.6840 -7.7714 15 6 6.4819 1.2598 -6.1064 16 6 6.9043 0.5992 -4.9701 17 7 6.0499 0.2775 -4.0176 18 6 3.9841 -1.6498 0.0974 19 6 3.4694 -0.9161 1.3420 20 1 3.6604 -1.5187 2.2301 21 6 4.1801 0.4324 1.4739 22 7 2.0233 -0.6993 1.1948 23 6 1.1512 -1.1403 2.1540 24 1 0.1579 -1.4598 1.8749 25 6 1.5437 -1.1770 3.4849 26 7 2.6723 -0.6093 3.8540 27 14 0.4700 -2.0319 4.7522 28 1 -0.7365 -2.5852 4.0863 29 1 1.2357 -3.1349 5.3864 30 1 0.0571 -1.0547 5.7913 31 1 -0.3633 0.5085 0.8931 32 1 -0.3633 0.5191 -0.8869 33 1 -0.3632 -1.0276 -0.0061 34 1 1.5385 -1.6942 -1.3386 35 1 1.8540 -0.1284 -2.1310 36 1 2.9668 0.4907 -3.1091 37 1 3.2158 1.4679 -5.3047 38 1 3.5925 2.1516 -7.7140 39 1 6.6243 2.0686 -8.5120 40 1 5.2144 2.4330 -9.6438 41 1 4.5837 4.4322 -8.2146 42 1 5.9930 4.0680 -7.0822 43 1 7.1882 1.5186 -6.8814 44 1 7.9474 0.3417 -4.8599 45 1 5.0741 -1.6496 0.0973 46 1 3.6159 -2.6757 0.0990 47 1 3.8018 0.9583 2.3505 48 1 5.2523 0.2689 1.5830 49 1 3.9927 1.0306 0.5822 50 1 2.9468 -0.6352 4.7841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879612125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:33 Heat of formation + Delta-G solvation = 89.678954 kcal Electronic energy + Delta-G solvation = -30763.060772 eV Core-core repulsion = 26793.132904 eV Total energy + Delta-G solvation = -3969.927868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.90251 -39.69206 -37.84605 -37.11197 -34.71885 -33.96654 -32.65831 -32.00883 -31.31799 -29.79522 -27.92083 -26.34539 -25.65989 -24.61778 -23.66460 -23.48928 -22.65476 -21.54690 -20.73689 -19.82065 -18.81811 -18.22992 -17.36110 -16.45668 -16.11141 -15.96643 -15.47201 -15.37222 -15.10651 -14.62128 -14.36585 -14.10070 -14.02201 -13.86877 -13.69295 -13.39770 -13.08309 -12.78491 -12.54036 -11.98727 -11.98129 -11.82283 -11.74922 -11.55069 -11.38626 -11.24513 -10.99294 -10.81867 -10.81097 -10.64290 -10.62239 -10.52910 -10.12710 -10.05358 -9.97129 -9.71779 -9.52706 -9.37597 -8.92246 -8.50986 -8.34481 -8.00071 -6.60015 -5.81026 -3.31899 1.12318 1.21280 2.69175 3.33312 3.35007 3.42045 3.43122 3.57944 3.93075 4.04817 4.13657 4.43049 4.46081 4.57374 4.64710 4.70623 4.96011 5.01723 5.08130 5.20314 5.30316 5.35057 5.42801 5.55990 5.60932 5.61748 5.65979 5.70852 5.74610 5.84109 6.01456 6.12500 6.16749 6.22820 6.27794 6.33431 6.37428 6.46133 6.62814 6.75540 6.82268 6.89186 6.94981 7.01732 7.06099 7.16180 7.64678 7.69484 7.81528 7.98016 8.33373 8.43394 8.94258 9.18007 9.77740 10.35949 11.25039 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.002407 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.135003 B =11631.131883 C =12244.467781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.154 3.846 3 H 0.031 0.969 4 C 0.098 3.902 5 N -0.609 5.609 6 C 0.693 3.307 7 O -0.537 6.537 8 N -0.673 5.673 9 C 0.393 3.607 10 C -0.212 4.212 11 C 0.019 3.981 12 C -0.122 4.122 13 C -0.173 4.173 14 C -0.165 4.165 15 C -0.220 4.220 16 C 0.139 3.861 17 N -0.475 5.475 18 C 0.111 3.889 19 C 0.178 3.822 20 H 0.111 0.889 21 C -0.136 4.136 22 N -0.580 5.580 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.006 3.994 26 N -0.898 5.898 27 Si 0.902 3.098 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.411 0.589 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.156 0.844 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.028 0.972 49 H 0.019 0.981 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 5.748 -21.976 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.048 0.952 4 C -0.027 4.027 5 N -0.346 5.346 6 C 0.394 3.606 7 O -0.409 6.409 8 N -0.323 5.323 9 C 0.160 3.840 10 C -0.236 4.236 11 C 0.011 3.989 12 C -0.140 4.140 13 C -0.210 4.210 14 C -0.202 4.202 15 C -0.242 4.242 16 C -0.020 4.020 17 N -0.189 5.189 18 C -0.013 4.013 19 C 0.071 3.929 20 H 0.128 0.872 21 C -0.195 4.195 22 N -0.303 5.303 23 C -0.381 4.381 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.542 5.542 27 Si 0.733 3.267 28 H -0.204 1.204 29 H -0.216 1.216 30 H -0.218 1.218 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.149 0.851 44 H 0.173 0.827 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.047 0.953 49 H 0.038 0.962 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.353 5.024 -20.834 21.692 hybrid contribution -1.420 0.256 -0.012 1.443 sum 1.933 5.280 -20.846 21.591 Atomic orbital electron populations 1.21772 0.95260 1.01681 1.00646 1.20779 0.93186 0.93966 0.87470 0.95175 1.22346 0.80791 1.00690 0.98880 1.47308 1.05929 1.59772 1.21555 1.15949 0.85531 0.79474 0.79604 1.90991 1.13901 1.60217 1.75779 1.43061 1.12937 1.55097 1.21190 1.18205 0.88216 0.91271 0.86310 1.21136 1.01093 1.06803 0.94612 1.19154 0.92874 0.93789 0.93128 1.21017 0.99045 0.99613 0.94288 1.23087 1.00239 1.02277 0.95370 1.23046 1.03498 0.90603 1.03075 1.21849 0.95996 1.05443 1.00865 1.22658 0.99080 0.92177 0.88049 1.67767 1.01088 1.20772 1.29298 1.22444 0.99539 0.95060 0.84260 1.20824 0.82758 0.95016 0.94324 0.87176 1.21952 0.97691 0.99351 1.00489 1.44100 1.01983 1.64559 1.19647 1.19181 0.96776 1.36335 0.85855 0.91241 1.25186 0.97640 0.99306 0.97182 1.69948 1.22729 1.45388 1.16151 0.86227 0.79938 0.78908 0.81663 1.20358 1.21646 1.21790 0.91488 0.94214 0.92517 0.91358 0.92502 0.75003 0.84942 0.86568 0.88110 0.88277 0.88233 0.88357 0.85131 0.82650 0.89999 0.92406 0.90770 0.95272 0.96236 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.97 37.16 0.30 -1.96 16 2 C 0.15 2.91 3.23 -67.48 -0.22 2.69 16 3 H 0.03 0.62 7.41 -51.93 -0.38 0.23 16 4 C 0.10 1.58 5.90 -3.59 -0.02 1.56 16 5 N -0.61 -11.28 2.59 -178.21 -0.46 -11.74 16 6 C 0.69 13.16 8.26 -86.91 -0.72 12.44 16 7 O -0.54 -12.05 14.03 5.29 0.07 -11.97 16 8 N -0.67 -10.22 5.28 -15.81 -0.08 -10.30 16 9 C 0.39 5.88 7.42 -154.71 -1.15 4.73 16 10 C -0.21 -2.42 9.67 -39.24 -0.38 -2.80 16 11 C 0.02 0.19 5.64 -104.35 -0.59 -0.40 16 12 C -0.12 -0.91 6.07 -91.76 -0.56 -1.47 16 13 C -0.17 -1.04 9.89 -26.69 -0.26 -1.30 16 14 C -0.17 -1.05 10.18 -26.69 -0.27 -1.32 16 15 C -0.22 -2.24 9.38 -39.42 -0.37 -2.61 16 16 C 0.14 1.77 11.17 -17.57 -0.20 1.57 16 17 N -0.47 -7.94 7.88 -12.37 -0.10 -8.04 16 18 C 0.11 2.26 5.96 -3.60 -0.02 2.24 16 19 C 0.18 4.07 2.34 -67.48 -0.16 3.91 16 20 H 0.11 2.85 6.02 -51.93 -0.31 2.54 16 21 C -0.14 -3.12 8.92 37.16 0.33 -2.78 16 22 N -0.58 -13.30 2.68 -157.01 -0.42 -13.72 16 23 C -0.25 -6.31 8.52 -15.06 -0.13 -6.43 16 24 H 0.07 1.70 6.29 -52.48 -0.33 1.37 16 25 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 26 N -0.90 -24.43 9.88 55.49 0.55 -23.88 16 27 Si 0.90 20.78 29.57 -169.99 -5.03 15.76 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.95 7.36 -51.93 -0.38 0.57 16 34 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 35 H 0.06 0.71 5.58 -51.93 -0.29 0.42 16 36 H 0.41 4.94 6.19 -40.82 -0.25 4.68 16 37 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.58 6.26 -51.93 -0.32 0.25 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.13 0.99 6.16 -52.49 -0.32 0.66 16 44 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 45 H 0.08 1.73 6.99 -51.93 -0.36 1.36 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.07 1.89 7.13 -51.93 -0.37 1.51 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.02 0.43 7.02 -51.93 -0.36 0.06 16 50 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -31.73 388.44 -11.57 -43.30 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.46 Total: 6.61 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -4.50 Total: 8.12 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -0.52 Total: -67.68 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.73 -11.57 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879612125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.984 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds