Wall clock time and date at job start Wed Apr 1 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.60773 * 2 1 4 4 C 1.53374 * 109.60931 * 239.48739 * 2 1 3 5 5 N 1.46969 * 108.63206 * 190.83005 * 4 2 1 6 6 C 1.34775 * 120.59141 * 235.20134 * 5 4 2 7 7 O 1.21581 * 120.00166 * 185.21894 * 6 5 4 8 8 N 1.34782 * 119.99991 * 5.22348 * 6 5 4 9 9 C 1.39396 * 119.99840 * 185.10833 * 8 6 5 10 10 C 1.39043 * 119.69780 * 174.79472 * 9 8 6 11 11 C 1.38343 * 119.10043 * 179.73393 * 10 9 8 12 12 C 1.50709 * 120.75011 * 180.24088 * 11 10 9 13 13 C 1.53001 * 117.49694 * 189.04104 * 12 11 10 14 14 C 1.53005 * 117.49877 * 120.38072 * 12 11 10 15 15 C 1.38846 * 118.49752 * 0.52632 * 11 10 9 16 16 C 1.38057 * 119.31099 * 359.73161 * 15 11 10 17 17 N 1.31939 * 120.84962 * 0.02562 * 16 15 11 18 18 C 1.46966 * 118.81352 * 55.22368 * 5 4 2 19 19 C 1.53369 * 108.63489 * 304.77186 * 18 5 4 20 20 H 1.09005 * 109.75286 * 169.25134 * 19 18 5 21 21 C 1.53001 * 109.61167 * 289.68102 * 19 18 5 22 22 N 1.46966 * 109.61149 * 120.33763 * 2 1 3 23 23 C 1.36933 * 120.59391 * 354.94819 * 22 2 1 24 24 H 1.08007 * 120.00090 * 31.95998 * 23 22 2 25 25 C 1.38808 * 120.00241 * 211.95477 * 23 22 2 26 26 N 1.31621 * 119.99877 * 9.98467 * 25 23 22 27 27 Si 1.86806 * 120.00164 * 189.98727 * 25 23 22 28 28 H 1.48500 * 109.46798 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.46914 * 119.99921 * 27 25 23 30 30 H 1.48502 * 109.46860 * 239.99666 * 27 25 23 31 31 H 1.09000 * 109.46733 * 299.65577 * 1 2 3 32 32 H 1.08996 * 109.46981 * 59.66205 * 1 2 3 33 33 H 1.08996 * 109.46710 * 179.66217 * 1 2 3 34 34 H 1.08996 * 109.60720 * 310.56698 * 4 2 1 35 35 H 1.08998 * 109.60853 * 71.08722 * 4 2 1 36 36 H 0.96998 * 120.00121 * 5.10095 * 8 6 5 37 37 H 1.08003 * 120.44421 * 359.97438 * 10 9 8 38 38 H 1.08995 * 115.54963 * 334.70868 * 12 11 10 39 39 H 1.09004 * 117.50023 * 359.97438 * 13 12 11 40 40 H 1.08994 * 117.49571 * 145.02011 * 13 12 11 41 41 H 1.08997 * 117.49980 * 214.97727 * 14 12 11 42 42 H 1.09003 * 117.49552 * 359.97438 * 14 12 11 43 43 H 1.08001 * 120.34643 * 179.71554 * 15 11 10 44 44 H 1.08009 * 119.57627 * 179.97438 * 16 15 11 45 45 H 1.09000 * 109.60594 * 185.03064 * 18 5 4 46 46 H 1.09003 * 109.60876 * 64.51772 * 18 5 4 47 47 H 1.09001 * 109.47017 * 179.14664 * 21 19 18 48 48 H 1.09002 * 109.47137 * 299.14418 * 21 19 18 49 49 H 1.08999 * 109.46983 * 59.14337 * 21 19 18 50 50 H 0.97006 * 120.00144 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7336 -1.2447 5 7 3.4909 -0.9505 -1.0974 6 6 4.3492 -0.5163 -2.0414 7 8 5.5322 -0.7838 -1.9567 8 7 3.8962 0.2144 -3.0794 9 6 4.7632 0.5731 -4.1103 10 6 4.2672 1.2326 -5.2294 11 6 5.1396 1.5877 -6.2427 12 6 4.6431 2.3083 -7.4697 13 6 5.6214 2.4779 -8.6337 14 6 5.2409 3.6840 -7.7714 15 6 6.4819 1.2598 -6.1064 16 6 6.9043 0.5992 -4.9701 17 7 6.0499 0.2775 -4.0176 18 6 3.9841 -1.6498 0.0974 19 6 3.4694 -0.9161 1.3420 20 1 3.6604 -1.5187 2.2301 21 6 4.1801 0.4324 1.4739 22 7 2.0233 -0.6993 1.1948 23 6 1.1512 -1.1403 2.1540 24 1 0.1579 -1.4598 1.8749 25 6 1.5437 -1.1770 3.4849 26 7 2.6723 -0.6093 3.8540 27 14 0.4700 -2.0319 4.7522 28 1 -0.7365 -2.5852 4.0863 29 1 1.2357 -3.1349 5.3864 30 1 0.0571 -1.0547 5.7913 31 1 -0.3633 0.5085 0.8931 32 1 -0.3633 0.5191 -0.8869 33 1 -0.3632 -1.0276 -0.0061 34 1 1.5385 -1.6942 -1.3386 35 1 1.8540 -0.1284 -2.1310 36 1 2.9668 0.4907 -3.1091 37 1 3.2158 1.4679 -5.3047 38 1 3.5925 2.1516 -7.7140 39 1 6.6243 2.0686 -8.5120 40 1 5.2144 2.4330 -9.6438 41 1 4.5837 4.4322 -8.2146 42 1 5.9930 4.0680 -7.0822 43 1 7.1882 1.5186 -6.8814 44 1 7.9474 0.3417 -4.8599 45 1 5.0741 -1.6496 0.0973 46 1 3.6159 -2.6757 0.0990 47 1 3.8018 0.9583 2.3505 48 1 5.2523 0.2689 1.5830 49 1 3.9927 1.0306 0.5822 50 1 2.9468 -0.6352 4.7841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879612125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:32 Heat of formation + Delta-G solvation = 72.935000 kcal Electronic energy + Delta-G solvation = -30763.786845 eV Core-core repulsion = 26793.132904 eV Total energy + Delta-G solvation = -3970.653940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.04677 -40.89416 -39.14012 -38.05182 -36.01478 -35.57552 -34.25677 -33.11327 -32.86206 -30.87886 -29.71206 -27.82170 -27.16442 -25.74219 -25.25282 -24.42474 -23.12913 -22.82279 -22.14086 -21.01610 -20.39212 -19.58685 -18.37987 -17.83693 -17.29633 -17.10221 -16.87295 -16.67873 -16.33148 -15.90300 -15.74074 -15.44715 -15.27871 -15.04666 -15.00415 -14.70508 -14.60824 -14.27319 -13.62506 -13.50050 -13.25741 -13.05889 -12.86885 -12.83978 -12.61552 -12.46289 -12.38990 -12.29875 -12.27146 -12.07115 -11.96387 -11.76668 -11.64266 -11.51658 -11.48712 -11.28547 -11.18048 -10.46869 -10.14337 -10.04380 -9.76653 -9.19619 -8.45480 -7.76540 -5.28788 0.19086 0.34710 1.42618 1.49049 1.52692 1.60373 2.11151 2.54395 2.68176 2.81829 3.19063 3.38854 3.44871 3.52787 3.70457 3.91748 4.03897 4.07902 4.13860 4.17902 4.20877 4.21451 4.29844 4.44226 4.49399 4.62775 4.65596 4.70888 4.79221 4.80828 4.83222 4.87867 4.89980 4.96747 5.07763 5.10509 5.13343 5.18135 5.27451 5.32406 5.33857 5.40655 5.48564 5.59054 5.69660 5.74428 5.78530 5.89668 5.93161 6.50159 6.72065 7.22119 7.23895 7.57782 7.91342 8.45536 9.27265 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.002407 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.135003 B =11631.131883 C =12244.467781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.147 3.853 3 H 0.017 0.983 4 C 0.105 3.895 5 N -0.611 5.611 6 C 0.693 3.307 7 O -0.579 6.579 8 N -0.661 5.661 9 C 0.359 3.641 10 C -0.201 4.201 11 C 0.017 3.983 12 C -0.133 4.133 13 C -0.165 4.165 14 C -0.163 4.163 15 C -0.204 4.204 16 C 0.117 3.883 17 N -0.527 5.527 18 C 0.125 3.875 19 C 0.182 3.818 20 H 0.077 0.923 21 C -0.117 4.117 22 N -0.594 5.594 23 C -0.245 4.245 24 H 0.078 0.922 25 C -0.049 4.049 26 N -0.927 5.927 27 Si 0.960 3.040 28 H -0.265 1.265 29 H -0.298 1.298 30 H -0.299 1.299 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.425 0.575 37 H 0.162 0.838 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.159 0.841 44 H 0.167 0.833 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.028 0.972 49 H 0.020 0.980 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 6.627 -25.821 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.041 3.959 3 H 0.035 0.965 4 C -0.019 4.019 5 N -0.348 5.348 6 C 0.394 3.606 7 O -0.454 6.454 8 N -0.313 5.313 9 C 0.128 3.872 10 C -0.225 4.225 11 C 0.009 3.991 12 C -0.151 4.151 13 C -0.202 4.202 14 C -0.200 4.200 15 C -0.225 4.225 16 C -0.040 4.040 17 N -0.242 5.242 18 C 0.000 4.000 19 C 0.074 3.926 20 H 0.095 0.905 21 C -0.176 4.176 22 N -0.317 5.317 23 C -0.376 4.376 24 H 0.096 0.904 25 C -0.244 4.244 26 N -0.573 5.573 27 Si 0.790 3.210 28 H -0.189 1.189 29 H -0.226 1.226 30 H -0.227 1.227 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.267 0.733 37 H 0.179 0.821 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.177 0.823 44 H 0.185 0.815 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.047 0.953 49 H 0.039 0.961 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.621 5.929 -24.754 25.506 hybrid contribution -0.839 0.075 1.011 1.316 sum 0.782 6.004 -23.743 24.503 Atomic orbital electron populations 1.21693 0.93166 1.01960 1.01658 1.21011 0.94938 0.93149 0.86847 0.96498 1.22384 0.79038 1.01505 0.98997 1.47258 1.06990 1.59661 1.20860 1.16088 0.84926 0.79439 0.80138 1.90959 1.15731 1.61787 1.76918 1.42769 1.13720 1.54452 1.20379 1.18492 0.88059 0.93318 0.87360 1.21404 1.02719 1.05106 0.93250 1.19549 0.92661 0.93112 0.93796 1.21085 1.00127 1.00247 0.93676 1.23207 0.99957 1.01411 0.95624 1.23115 1.03366 0.90557 1.02925 1.22145 0.96844 1.03308 1.00237 1.22957 0.99370 0.93152 0.88547 1.67596 1.02585 1.22534 1.31515 1.22047 0.98725 0.94983 0.84272 1.20585 0.83419 0.94338 0.94212 0.90542 1.21734 0.97524 0.99322 0.98998 1.44296 1.01622 1.65201 1.20610 1.19480 0.97034 1.34875 0.86182 0.90449 1.25840 0.98842 1.00710 0.99010 1.70115 1.24304 1.47230 1.15698 0.85313 0.78852 0.77414 0.79447 1.18939 1.22555 1.22681 0.93813 0.89855 0.92564 0.90561 0.88163 0.73327 0.82078 0.85194 0.87886 0.86733 0.86799 0.89068 0.82305 0.81544 0.91210 0.92154 0.93634 0.95278 0.96054 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 7.97 71.98 0.57 -3.33 16 2 C 0.15 5.36 3.23 45.03 0.15 5.51 16 3 H 0.02 0.68 7.41 -2.38 -0.02 0.66 16 4 C 0.10 3.12 5.90 86.42 0.51 3.63 16 5 N -0.61 -22.27 2.59 -836.00 -2.17 -24.44 16 6 C 0.69 26.13 8.26 179.05 1.48 27.61 16 7 O -0.58 -26.63 14.03 -3.97 -0.06 -26.69 16 8 N -0.66 -19.15 5.28 -322.19 -1.70 -20.85 16 9 C 0.36 10.37 7.42 132.92 0.99 11.35 16 10 C -0.20 -4.07 9.67 22.49 0.22 -3.85 16 11 C 0.02 0.30 5.64 -19.69 -0.11 0.19 16 12 C -0.13 -1.50 6.07 -11.53 -0.07 -1.57 16 13 C -0.17 -1.34 9.89 30.62 0.30 -1.04 16 14 C -0.16 -1.49 10.18 30.62 0.31 -1.18 16 15 C -0.20 -3.73 9.38 22.37 0.21 -3.52 16 16 C 0.12 2.92 11.17 84.63 0.95 3.86 16 17 N -0.53 -17.71 7.88 -193.05 -1.52 -19.23 16 18 C 0.12 5.20 5.96 86.41 0.51 5.71 16 19 C 0.18 8.59 2.34 45.03 0.11 8.70 16 20 H 0.08 4.16 6.02 -2.38 -0.01 4.15 16 21 C -0.12 -5.57 8.92 71.98 0.64 -4.93 16 22 N -0.59 -27.37 2.68 -650.67 -1.74 -29.12 16 23 C -0.25 -12.32 8.52 84.03 0.72 -11.61 16 24 H 0.08 3.72 6.29 -2.91 -0.02 3.70 16 25 C -0.05 -2.57 5.06 84.86 0.43 -2.14 16 26 N -0.93 -52.49 9.88 21.65 0.21 -52.27 16 27 Si 0.96 43.54 29.57 68.60 2.03 45.57 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 30 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 31 H 0.04 1.54 7.69 -2.39 -0.02 1.53 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.73 7.36 -2.39 -0.02 1.72 16 34 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 35 H 0.10 2.11 5.58 -2.39 -0.01 2.10 16 36 H 0.42 9.00 6.19 -92.71 -0.57 8.42 16 37 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 0.79 6.26 -2.38 -0.01 0.77 16 40 H 0.11 0.61 8.14 -2.39 -0.02 0.60 16 41 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.16 1.90 6.16 -2.91 -0.02 1.88 16 44 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 45 H 0.07 3.07 6.99 -2.39 -0.02 3.05 16 46 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.04 2.41 7.13 -2.39 -0.02 2.39 16 48 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.02 0.96 7.02 -2.39 -0.02 0.94 16 50 H 0.25 13.73 8.31 -92.70 -0.77 12.95 16 Total: -1.00 -72.82 388.44 3.35 -69.47 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.39 Total: 24.16 kcal Atomic # 6 Polarization: 25.49 SS G_CDS: 7.91 Total: 33.40 kcal Atomic # 7 Polarization: -138.99 SS G_CDS: -6.92 Total: -145.91 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -72.82 3.35 -69.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879612125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.409 kcal (2) G-P(sol) polarization free energy of solvation -72.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds