Wall clock time and date at job start Wed Apr 1 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.74539 * 2 1 4 4 C 1.53801 * 109.69562 * 120.66779 * 2 1 3 5 5 N 1.46970 * 108.58053 * 169.29010 * 4 2 1 6 6 C 1.34779 * 120.59209 * 124.62263 * 5 4 2 7 7 O 1.21576 * 119.99923 * 184.30707 * 6 5 4 8 8 N 1.34773 * 120.00072 * 4.31133 * 6 5 4 9 9 C 1.39402 * 119.99940 * 175.85718 * 8 6 5 10 10 C 1.39041 * 119.69250 * 21.10849 * 9 8 6 11 11 C 1.38354 * 119.09518 * 179.75354 * 10 9 8 12 12 C 1.50704 * 120.74895 * 180.21940 * 11 10 9 13 13 C 1.53001 * 117.49802 * 188.92180 * 12 11 10 14 14 C 1.52995 * 117.50048 * 120.29624 * 12 11 10 15 15 C 1.38846 * 118.49923 * 0.50747 * 11 10 9 16 16 C 1.38054 * 119.30848 * 359.73080 * 15 11 10 17 17 N 1.31946 * 120.85242 * 0.02562 * 16 15 11 18 18 C 1.46962 * 118.80975 * 304.65057 * 5 4 2 19 19 C 1.53361 * 108.63796 * 55.22220 * 18 5 4 20 20 H 1.09000 * 109.75550 * 190.74487 * 19 18 5 21 21 C 1.52999 * 109.61003 * 70.32214 * 19 18 5 22 22 N 1.46962 * 109.60741 * 239.57873 * 2 1 3 23 23 C 1.36938 * 120.60126 * 5.04778 * 22 2 1 24 24 H 1.07992 * 120.00274 * 233.47863 * 23 22 2 25 25 C 1.38813 * 119.99372 * 53.19722 * 23 22 2 26 26 N 1.31619 * 119.99965 * 206.48646 * 25 23 22 27 27 Si 1.86795 * 120.00150 * 26.48692 * 25 23 22 28 28 H 1.48501 * 109.47048 * 95.22838 * 27 25 23 29 29 H 1.48504 * 109.47027 * 215.22939 * 27 25 23 30 30 H 1.48497 * 109.47375 * 335.22745 * 27 25 23 31 31 H 1.09001 * 109.46951 * 171.58372 * 1 2 3 32 32 H 1.08998 * 109.47054 * 291.58235 * 1 2 3 33 33 H 1.09004 * 109.47009 * 51.58795 * 1 2 3 34 34 H 1.09000 * 109.74677 * 49.50361 * 4 2 1 35 35 H 1.09000 * 109.67868 * 289.04225 * 4 2 1 36 36 H 0.97005 * 120.00030 * 355.85618 * 8 6 5 37 37 H 1.08001 * 120.45483 * 359.97438 * 10 9 8 38 38 H 1.09001 * 115.54849 * 334.62295 * 12 11 10 39 39 H 1.09005 * 117.49497 * 359.97438 * 13 12 11 40 40 H 1.08999 * 117.50294 * 145.02222 * 13 12 11 41 41 H 1.08998 * 117.50410 * 214.97162 * 14 12 11 42 42 H 1.09000 * 117.49769 * 0.02562 * 14 12 11 43 43 H 1.07998 * 120.34680 * 179.70760 * 15 11 10 44 44 H 1.08008 * 119.57791 * 179.97438 * 16 15 11 45 45 H 1.09004 * 109.61017 * 295.47577 * 18 5 4 46 46 H 1.09002 * 109.74918 * 175.05730 * 18 5 4 47 47 H 1.09004 * 109.47174 * 300.85422 * 21 19 18 48 48 H 1.08995 * 109.47394 * 60.85579 * 21 19 18 49 49 H 1.09006 * 109.47400 * 180.85700 * 21 19 18 50 50 H 0.96995 * 120.00608 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0484 -0.7386 1.2455 5 7 3.4949 -0.9508 1.0959 6 6 4.3534 -0.5145 2.0389 7 8 5.5519 -0.6256 1.8680 8 7 3.8832 0.0450 3.1712 9 6 4.7663 0.4174 4.1835 10 6 6.1073 0.6297 3.8839 11 6 6.9719 1.0040 4.8971 12 6 8.4316 1.2486 4.6133 13 6 9.3598 1.4533 5.8122 14 6 8.9877 2.6402 4.9213 15 6 6.4656 1.1433 6.1824 16 6 5.1236 0.9115 6.4089 17 7 4.3216 0.5604 5.4218 18 6 3.9886 -1.6469 -0.1006 19 6 3.4698 -0.9133 -1.3434 20 1 3.6613 -1.5139 -2.2326 21 6 4.1761 0.4376 -1.4746 22 7 2.0232 -0.7010 -1.1938 23 6 1.1511 -1.1436 -2.1523 24 1 1.1715 -2.1770 -2.4652 25 6 0.2369 -0.2651 -2.7176 26 7 -0.8961 -0.7204 -3.2088 27 14 0.6147 1.5631 -2.7810 28 1 1.2099 1.9001 -4.0991 29 1 -0.6401 2.3347 -2.5926 30 1 1.5745 1.9080 -1.7017 31 1 -0.3633 -1.0166 -0.1504 32 1 -0.3633 0.3780 0.9556 33 1 -0.3633 0.6385 -0.8053 34 1 1.5452 -1.7010 1.3390 35 1 1.8568 -0.1379 2.1347 36 1 2.9302 0.1885 3.2819 37 1 6.4685 0.5077 2.8734 38 1 8.8361 0.7254 3.7468 39 1 8.9145 1.4115 6.8063 40 1 10.3753 1.0648 5.7348 41 1 9.7584 3.0325 4.2578 42 1 8.2979 3.3788 5.3297 43 1 7.1148 1.4296 6.9966 44 1 4.7252 1.0182 7.4071 45 1 3.6236 -2.6740 -0.1031 46 1 5.0786 -1.6462 -0.1037 47 1 3.9881 1.0341 -0.5818 48 1 5.2485 0.2776 -1.5854 49 1 3.7948 0.9636 -2.3499 50 1 -1.5348 -0.1068 -3.6041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879612127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:36 Heat of formation + Delta-G solvation = 75.079748 kcal Electronic energy + Delta-G solvation = -31127.805033 eV Core-core repulsion = 27157.244095 eV Total energy + Delta-G solvation = -3970.560937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.28269 -40.97439 -39.37591 -38.20165 -36.04235 -35.91697 -34.33213 -33.54325 -32.86593 -31.01203 -30.06270 -27.93843 -27.35037 -25.45877 -25.25940 -24.64019 -23.21588 -23.00181 -22.07513 -21.23767 -20.36650 -19.75145 -18.63901 -18.17317 -17.60202 -17.21234 -17.13665 -16.73053 -16.51243 -16.09784 -15.83293 -15.48541 -15.39439 -15.09847 -14.96660 -14.81156 -14.68750 -14.36121 -14.21591 -13.81967 -13.56815 -13.38194 -13.14613 -12.86889 -12.69055 -12.55100 -12.47752 -12.41100 -12.35211 -12.16887 -11.88648 -11.81945 -11.68644 -11.65239 -11.42977 -11.35036 -11.00111 -10.53557 -10.51404 -10.12784 -9.90003 -9.26488 -8.35974 -8.20992 -5.71909 0.14115 0.28370 1.26150 1.32194 1.42205 1.50926 1.86637 2.41660 2.53282 2.73092 3.00631 3.11623 3.30522 3.45701 3.71481 3.87098 3.96209 4.00009 4.03579 4.09392 4.15394 4.19092 4.29805 4.34391 4.40056 4.45230 4.51724 4.62311 4.69823 4.76546 4.78174 4.82728 4.84147 4.89931 4.95094 5.02137 5.07153 5.10782 5.13313 5.21817 5.23239 5.27840 5.29610 5.44745 5.53092 5.63289 5.74312 5.87563 5.98423 6.36190 6.56055 7.04093 7.09235 7.26486 7.60745 8.20083 8.94687 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.002764 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.463071 B =10127.280347 C =10517.920285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.151 3.849 3 H 0.030 0.970 4 C 0.105 3.895 5 N -0.605 5.605 6 C 0.711 3.289 7 O -0.596 6.596 8 N -0.663 5.663 9 C 0.356 3.644 10 C -0.206 4.206 11 C 0.006 3.994 12 C -0.146 4.146 13 C -0.155 4.155 14 C -0.160 4.160 15 C -0.198 4.198 16 C 0.125 3.875 17 N -0.539 5.539 18 C 0.129 3.871 19 C 0.145 3.855 20 H 0.080 0.920 21 C -0.147 4.147 22 N -0.599 5.599 23 C -0.267 4.267 24 H 0.036 0.964 25 C 0.031 3.969 26 N -0.924 5.924 27 Si 0.909 3.091 28 H -0.304 1.304 29 H -0.300 1.300 30 H -0.245 1.245 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.418 0.582 37 H 0.154 0.846 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.165 0.835 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.035 0.965 48 H 0.066 0.934 49 H 0.034 0.966 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.006 5.443 20.858 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.045 3.955 3 H 0.048 0.952 4 C -0.019 4.019 5 N -0.339 5.339 6 C 0.413 3.587 7 O -0.476 6.476 8 N -0.313 5.313 9 C 0.126 3.874 10 C -0.229 4.229 11 C -0.002 4.002 12 C -0.165 4.165 13 C -0.192 4.192 14 C -0.197 4.197 15 C -0.219 4.219 16 C -0.032 4.032 17 N -0.255 5.255 18 C 0.005 3.995 19 C 0.038 3.962 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.324 5.324 23 C -0.396 4.396 24 H 0.053 0.947 25 C -0.169 4.169 26 N -0.565 5.565 27 Si 0.737 3.263 28 H -0.233 1.233 29 H -0.227 1.227 30 H -0.169 1.169 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.258 0.742 37 H 0.171 0.829 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.183 0.817 44 H 0.210 0.790 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.053 0.947 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.733 5.161 20.724 26.526 hybrid contribution -0.227 0.980 -1.186 1.556 sum 15.506 6.142 19.538 25.688 Atomic orbital electron populations 1.21793 0.94381 1.02252 1.00281 1.21222 0.93972 0.93867 0.86449 0.95190 1.22403 0.79192 1.01751 0.98580 1.47180 1.06637 1.59278 1.20843 1.15681 0.84931 0.78109 0.79964 1.90724 1.14014 1.63435 1.79448 1.42428 1.11193 1.62786 1.14918 1.18141 0.88024 0.94568 0.86665 1.22478 0.92967 1.04223 1.03200 1.19724 0.94600 0.92968 0.92932 1.21035 0.89910 1.03120 1.02398 1.23205 0.99952 1.01079 0.94936 1.23103 1.03074 0.90190 1.03316 1.22207 0.97211 1.05008 0.97440 1.23005 0.89953 0.92593 0.97634 1.67039 1.41262 1.18429 0.98750 1.21992 0.99933 0.94901 0.82717 1.21241 0.83891 0.94870 0.96182 0.90168 1.22058 1.00014 0.98659 0.99829 1.44370 1.00894 1.68009 1.19115 1.18213 1.12604 0.92567 1.16245 0.94691 1.26210 0.95399 1.00246 0.95086 1.70031 1.07692 1.36677 1.42069 0.86462 0.77481 0.84258 0.78080 1.23288 1.22696 1.16868 0.92598 0.90484 0.94839 0.90241 0.88744 0.74169 0.82921 0.87441 0.86881 0.87003 0.87345 0.88280 0.81731 0.78973 0.91137 0.88772 0.94594 0.91475 0.94679 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 7.75 71.98 0.56 -4.45 16 2 C 0.15 5.67 2.06 45.17 0.09 5.76 16 3 H 0.03 1.20 6.07 -2.39 -0.01 1.18 16 4 C 0.11 3.14 5.89 86.56 0.51 3.65 16 5 N -0.61 -19.05 2.59 -835.18 -2.17 -21.22 16 6 C 0.71 22.85 8.20 179.05 1.47 24.32 16 7 O -0.60 -21.59 12.44 -3.96 -0.05 -21.64 16 8 N -0.66 -18.72 5.33 -322.21 -1.72 -20.44 16 9 C 0.36 10.17 7.51 132.92 1.00 11.16 16 10 C -0.21 -5.87 8.61 22.49 0.19 -5.67 16 11 C 0.01 0.13 5.64 -19.69 -0.11 0.02 16 12 C -0.15 -2.57 6.07 -11.54 -0.07 -2.64 16 13 C -0.16 -1.70 9.88 30.60 0.30 -1.40 16 14 C -0.16 -2.05 10.18 30.59 0.31 -1.74 16 15 C -0.20 -3.34 9.38 22.37 0.21 -3.13 16 16 C 0.13 2.30 11.17 84.63 0.95 3.25 16 17 N -0.54 -13.65 10.39 -193.05 -2.01 -15.66 16 18 C 0.13 4.18 5.96 86.41 0.52 4.69 16 19 C 0.14 5.38 3.31 45.02 0.15 5.53 16 20 H 0.08 3.04 7.93 -2.39 -0.02 3.02 16 21 C -0.15 -5.24 9.13 71.98 0.66 -4.59 16 22 N -0.60 -25.65 1.90 -649.91 -1.23 -26.89 16 23 C -0.27 -13.83 8.58 84.03 0.72 -13.11 16 24 H 0.04 2.06 8.06 -2.91 -0.02 2.03 16 25 C 0.03 1.67 3.74 84.86 0.32 1.98 16 26 N -0.92 -53.45 13.97 21.65 0.30 -53.15 16 27 Si 0.91 43.69 25.14 68.60 1.72 45.41 16 28 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 30 H -0.24 -11.13 5.46 99.48 0.54 -10.58 16 31 H 0.05 2.40 7.51 -2.39 -0.02 2.39 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.03 1.47 3.73 -2.38 -0.01 1.46 16 34 H 0.08 2.38 8.12 -2.39 -0.02 2.36 16 35 H 0.09 2.23 5.60 -2.39 -0.01 2.21 16 36 H 0.42 10.17 6.29 -92.70 -0.58 9.59 16 37 H 0.15 5.05 5.18 -8.47 -0.04 5.01 16 38 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.11 0.92 6.25 -2.38 -0.01 0.90 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.17 1.61 6.16 -2.91 -0.02 1.59 16 44 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.07 2.25 8.14 -2.38 -0.02 2.24 16 46 H 0.09 2.97 6.97 -2.39 -0.02 2.95 16 47 H 0.03 1.32 7.00 -2.38 -0.02 1.30 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.03 1.34 7.97 -2.38 -0.02 1.32 16 50 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -66.36 380.72 2.82 -63.54 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.20 Total: 26.39 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 7.77 Total: 23.65 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -6.82 Total: -137.35 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.72 Total: 45.41 kcal Total: -66.36 2.82 -63.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879612127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.620 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds