Wall clock time and date at job start Wed Apr 1 2020 03:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.32791 * 2 1 4 4 C 1.54906 * 110.46089 * 237.69899 * 2 1 3 5 5 H 1.09004 * 111.00763 * 322.21838 * 4 2 1 6 6 N 1.46900 * 111.00228 * 86.03084 * 4 2 1 7 7 C 1.48536 * 111.00273 * 172.53769 * 6 4 2 8 8 C 1.54939 * 103.22930 * 159.72110 * 7 6 4 9 9 C 1.54591 * 102.91818 * 322.58766 * 8 7 6 10 10 C 1.47905 * 111.00014 * 289.93324 * 6 4 2 11 11 C 1.55158 * 101.58248 * 204.10298 * 4 2 1 12 12 C 1.54320 * 102.94245 * 35.50640 * 11 4 2 13 13 N 1.47020 * 107.26994 * 337.80534 * 12 11 4 14 14 C 1.34776 * 125.65135 * 178.90853 * 13 12 11 15 15 O 1.21577 * 120.00418 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99740 * 0.02562 * 14 13 12 17 17 C 1.39244 * 120.00216 * 183.74522 * 16 14 13 18 18 C 1.39686 * 119.57352 * 339.03490 * 17 16 14 19 19 C 1.38646 * 119.49473 * 180.02562 * 18 17 16 20 20 C 1.38349 * 118.67099 * 359.97438 * 19 18 17 21 21 C 1.40577 * 119.13578 * 0.02562 * 20 19 18 22 22 C 1.41326 * 119.78989 * 179.97438 * 21 20 19 23 23 H 1.08000 * 120.00445 * 354.88118 * 22 21 20 24 24 C 1.40031 * 119.99695 * 174.87860 * 22 21 20 25 25 N 1.30741 * 119.99929 * 5.14027 * 24 22 21 26 26 Si 1.86799 * 119.99906 * 185.12878 * 24 22 21 27 27 H 1.48503 * 109.46952 * 95.00157 * 26 24 22 28 28 H 1.48495 * 109.47483 * 215.00266 * 26 24 22 29 29 H 1.48498 * 109.47230 * 335.00887 * 26 24 22 30 30 N 1.31904 * 119.57808 * 158.76445 * 17 16 14 31 31 H 1.08997 * 109.47015 * 299.21186 * 1 2 3 32 32 H 1.08993 * 109.47307 * 59.21618 * 1 2 3 33 33 H 1.09004 * 109.47011 * 179.21928 * 1 2 3 34 34 H 1.08999 * 110.66525 * 278.15772 * 7 6 4 35 35 H 1.09000 * 110.66634 * 41.28168 * 7 6 4 36 36 H 1.09000 * 110.72226 * 204.22940 * 8 7 6 37 37 H 1.09002 * 110.72275 * 80.94451 * 8 7 6 38 38 H 1.09005 * 110.30824 * 263.03827 * 9 8 7 39 39 H 1.08998 * 110.30972 * 140.87788 * 9 8 7 40 40 H 1.08994 * 109.91740 * 333.50944 * 10 6 4 41 41 H 1.08996 * 109.91489 * 94.80300 * 10 6 4 42 42 H 1.08996 * 110.72360 * 277.13642 * 11 4 2 43 43 H 1.09002 * 110.71572 * 153.86966 * 11 4 2 44 44 H 1.08996 * 109.88379 * 218.38979 * 12 11 4 45 45 H 1.09005 * 109.88218 * 97.22159 * 12 11 4 46 46 H 0.97002 * 120.00360 * 3.74860 * 16 14 13 47 47 H 1.08000 * 120.25279 * 359.97438 * 18 17 16 48 48 H 1.07996 * 120.66494 * 179.97438 * 19 18 17 49 49 H 1.08006 * 120.43444 * 179.97438 * 20 19 18 50 50 H 0.97007 * 119.99647 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7755 -1.2267 5 1 1.4546 -1.6484 -1.4407 6 7 2.1666 0.0995 -2.4028 7 6 2.8501 -0.5910 -3.5263 8 6 2.4007 0.2206 -4.7673 9 6 0.9304 0.5677 -4.4394 10 6 0.8231 0.4576 -2.9071 11 6 3.4803 -1.1970 -0.7318 12 6 3.2509 -1.4739 0.7689 13 7 2.0431 -0.7373 1.1690 14 6 1.4953 -0.7366 2.4004 15 8 0.4904 -0.0878 2.6184 16 7 2.0614 -1.4552 3.3902 17 6 1.4529 -1.5174 4.6411 18 6 0.5392 -0.5285 5.0133 19 6 -0.0653 -0.5918 6.2594 20 6 0.2578 -1.6409 7.1014 21 6 1.1851 -2.6050 6.6690 22 6 1.5256 -3.6821 7.5181 23 1 1.1384 -3.7189 8.5256 24 6 2.3651 -4.7019 7.0530 25 7 2.9144 -4.6079 5.8703 26 14 2.7003 -6.1962 8.1226 27 1 1.7616 -7.2873 7.7569 28 1 4.0972 -6.6533 7.9107 29 1 2.5085 -5.8361 9.5504 30 7 1.7427 -2.5122 5.4574 31 1 -0.3633 0.5015 0.8970 32 1 -0.3633 0.5259 -0.8828 33 1 -0.3633 -1.0276 -0.0140 34 1 3.9323 -0.5426 -3.4063 35 1 2.5163 -1.6259 -3.6019 36 1 2.4613 -0.3886 -5.6692 37 1 2.9969 1.1270 -4.8719 38 1 0.2578 -0.1443 -4.9178 39 1 0.7001 1.5828 -4.7628 40 1 0.1069 -0.3194 -2.6399 41 1 0.5115 1.4138 -2.4871 42 1 4.1959 -0.3865 -0.8694 43 1 3.8149 -2.0993 -1.2437 44 1 4.1069 -1.1236 1.3456 45 1 3.1043 -2.5419 0.9306 46 1 2.8927 -1.9290 3.2312 47 1 0.3059 0.2796 4.3358 48 1 -0.7742 0.1628 6.5667 49 1 -0.1958 -1.7178 8.0786 50 1 3.4962 -5.3142 5.5483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881145254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:28 Heat of formation + Delta-G solvation = 37.044953 kcal Electronic energy + Delta-G solvation = -30484.804596 eV Core-core repulsion = 26512.594347 eV Total energy + Delta-G solvation = -3972.210250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63983 -39.39325 -38.02877 -36.81942 -34.31438 -33.35455 -32.51535 -31.60116 -30.33964 -29.77407 -28.99593 -28.48652 -25.44562 -25.40020 -23.31346 -22.22289 -21.55550 -21.25484 -20.89553 -20.42475 -19.22971 -17.74919 -17.41884 -16.94408 -16.35841 -16.03401 -15.24552 -15.08410 -14.81712 -14.48076 -14.34655 -14.23117 -14.01058 -13.80364 -13.56150 -13.21233 -12.87481 -12.79080 -12.65876 -12.56903 -12.30951 -11.98697 -11.96214 -11.75358 -11.61411 -11.38090 -11.28327 -11.22404 -11.06172 -11.01595 -10.90419 -10.84964 -10.61136 -10.53987 -10.05437 -9.82002 -9.19219 -8.83375 -8.75409 -8.48663 -7.98189 -7.62901 -7.02564 -6.38462 -4.46560 2.67824 2.78571 2.98361 3.09891 3.13629 3.28253 3.66377 3.72946 3.96994 4.06845 4.31273 4.36916 4.46469 4.62242 4.63600 4.81691 4.86613 4.95833 5.09297 5.16577 5.17680 5.33485 5.39891 5.46485 5.48694 5.50368 5.59026 5.64148 5.65456 5.73707 5.77737 5.86739 5.91786 5.94904 6.13699 6.17203 6.27295 6.44929 6.54079 6.61693 6.77205 6.85042 6.86323 7.01288 7.14904 7.31641 7.56363 7.66414 7.95680 8.10573 8.21921 8.46447 8.74144 8.94171 9.10354 10.09575 10.34519 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002422 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.547202 B =11559.383393 C =12707.123228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.169 3.831 3 H 0.081 0.919 4 C 0.062 3.938 5 H 0.061 0.939 6 N -0.505 5.505 7 C 0.036 3.964 8 C -0.124 4.124 9 C -0.133 4.133 10 C 0.032 3.968 11 C -0.120 4.120 12 C 0.098 3.902 13 N -0.635 5.635 14 C 0.728 3.272 15 O -0.563 6.563 16 N -0.656 5.656 17 C 0.372 3.628 18 C -0.312 4.312 19 C -0.051 4.051 20 C -0.290 4.290 21 C 0.280 3.720 22 C -0.437 4.437 23 H 0.085 0.915 24 C 0.072 3.928 25 N -0.724 5.724 26 Si 0.906 3.094 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.262 1.262 30 N -0.509 5.509 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.402 0.598 47 H 0.140 0.860 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 5.467 -20.621 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.065 3.935 3 H 0.099 0.901 4 C -0.047 4.047 5 H 0.079 0.921 6 N -0.230 5.230 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.171 4.171 10 C -0.096 4.096 11 C -0.158 4.158 12 C -0.026 4.026 13 N -0.375 5.375 14 C 0.430 3.570 15 O -0.440 6.440 16 N -0.303 5.303 17 C 0.137 3.863 18 C -0.337 4.337 19 C -0.076 4.076 20 C -0.313 4.313 21 C 0.153 3.847 22 C -0.469 4.469 23 H 0.103 0.897 24 C -0.153 4.153 25 N -0.346 5.346 26 Si 0.731 3.269 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.185 1.185 30 N -0.227 5.227 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.237 0.763 47 H 0.157 0.843 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.891 5.642 -20.621 21.573 hybrid contribution -0.382 -1.285 0.398 1.398 sum 2.510 4.357 -20.223 20.838 Atomic orbital electron populations 1.22367 0.94008 1.02592 1.03967 1.21504 0.94811 0.95165 0.82000 0.90115 1.23065 0.96800 0.94150 0.90721 0.92148 1.64716 1.15830 1.38326 1.04082 1.23220 0.99897 0.96066 0.90028 1.22477 0.96073 1.00422 0.97201 1.22428 0.96999 1.02199 0.95466 1.23018 0.90514 1.01609 0.94435 1.22642 0.96777 1.02293 0.94103 1.21998 0.88148 0.97018 0.95415 1.47564 1.29360 1.52187 1.08425 1.15238 0.82454 0.80486 0.78801 1.90731 1.26080 1.47059 1.80137 1.42262 1.26882 1.51285 1.09836 1.18238 0.91857 0.91577 0.84663 1.21848 1.07891 1.04521 0.99449 1.20833 0.96910 0.96324 0.93509 1.21710 1.07720 1.00751 1.01151 1.18168 0.87629 0.91232 0.87664 1.19544 1.24843 1.03295 0.99244 0.89718 1.26029 0.94597 0.99486 0.95149 1.70131 1.18961 1.29854 1.15662 0.86339 0.78159 0.81263 0.81164 1.19610 1.20244 1.18541 1.68008 1.29690 1.19987 1.05057 0.88730 0.92118 0.93026 0.89803 0.93685 0.91128 0.90662 0.91587 0.90950 0.93177 0.89911 0.89429 0.90231 0.91173 0.91302 0.76276 0.84296 0.88403 0.88320 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 8.18 37.16 0.30 -2.02 16 2 C 0.17 2.18 3.23 -66.42 -0.21 1.96 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.06 0.63 1.97 -65.56 -0.13 0.50 16 5 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 6 N -0.51 -4.51 5.15 -219.94 -1.13 -5.64 16 7 C 0.04 0.26 5.86 -1.90 -0.01 0.24 16 8 C -0.12 -0.76 7.06 -24.87 -0.18 -0.94 16 9 C -0.13 -0.86 6.93 -25.38 -0.18 -1.04 16 10 C 0.03 0.26 4.95 -2.75 -0.01 0.25 16 11 C -0.12 -1.08 5.76 -24.90 -0.14 -1.23 16 12 C 0.10 1.14 6.15 -3.07 -0.02 1.12 16 13 N -0.64 -9.56 3.24 -168.73 -0.55 -10.11 16 14 C 0.73 14.30 8.17 -86.92 -0.71 13.59 16 15 O -0.56 -12.45 10.65 5.30 0.06 -12.40 16 16 N -0.66 -13.95 5.37 -15.79 -0.08 -14.04 16 17 C 0.37 9.50 7.51 -155.00 -1.16 8.33 16 18 C -0.31 -7.86 8.89 -38.89 -0.35 -8.21 16 19 C -0.05 -1.24 10.15 -39.39 -0.40 -1.64 16 20 C -0.29 -7.46 9.83 -38.66 -0.38 -7.84 16 21 C 0.28 7.85 6.55 -85.00 -0.56 7.29 16 22 C -0.44 -11.83 9.13 -37.74 -0.34 -12.18 16 23 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 24 C 0.07 1.83 5.49 -17.34 -0.10 1.73 16 25 N -0.72 -19.02 11.48 55.55 0.64 -18.38 16 26 Si 0.91 18.68 29.56 -169.99 -5.03 13.65 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 29 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 30 N -0.51 -14.16 7.91 -10.26 -0.08 -14.24 16 31 H 0.09 1.57 5.88 -51.93 -0.31 1.26 16 32 H 0.06 0.66 5.41 -51.93 -0.28 0.38 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.04 0.33 8.02 -51.93 -0.42 -0.09 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.44 6.75 -51.93 -0.35 0.09 16 41 H 0.08 0.70 7.54 -51.93 -0.39 0.31 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.40 7.81 7.82 -40.82 -0.32 7.49 16 47 H 0.14 3.47 5.17 -52.92 -0.27 3.20 16 48 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 49 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 50 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -31.35 386.69 -12.71 -44.06 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.78 Total: 11.32 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -4.57 Total: -0.06 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -1.21 Total: -62.41 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.06 Total: -12.40 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.35 -12.71 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.107 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds