Wall clock time and date at job start Wed Apr 1 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.32791 * 2 1 4 4 C 1.54906 * 110.46089 * 237.69899 * 2 1 3 5 5 H 1.09004 * 111.00763 * 322.21838 * 4 2 1 6 6 N 1.46900 * 111.00228 * 86.03084 * 4 2 1 7 7 C 1.48536 * 111.00273 * 172.53769 * 6 4 2 8 8 C 1.54939 * 103.22930 * 159.72110 * 7 6 4 9 9 C 1.54591 * 102.91818 * 322.58766 * 8 7 6 10 10 C 1.47905 * 111.00014 * 289.93324 * 6 4 2 11 11 C 1.55158 * 101.58248 * 204.10298 * 4 2 1 12 12 C 1.54320 * 102.94245 * 35.50640 * 11 4 2 13 13 N 1.47020 * 107.26994 * 337.80534 * 12 11 4 14 14 C 1.34776 * 125.65135 * 178.90853 * 13 12 11 15 15 O 1.21577 * 120.00418 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99740 * 0.02562 * 14 13 12 17 17 C 1.39244 * 120.00216 * 183.74522 * 16 14 13 18 18 C 1.39686 * 119.57352 * 339.03490 * 17 16 14 19 19 C 1.38646 * 119.49473 * 180.02562 * 18 17 16 20 20 C 1.38349 * 118.67099 * 359.97438 * 19 18 17 21 21 C 1.40577 * 119.13578 * 0.02562 * 20 19 18 22 22 C 1.41326 * 119.78989 * 179.97438 * 21 20 19 23 23 H 1.08000 * 120.00445 * 354.88118 * 22 21 20 24 24 C 1.40031 * 119.99695 * 174.87860 * 22 21 20 25 25 N 1.30741 * 119.99929 * 5.14027 * 24 22 21 26 26 Si 1.86799 * 119.99906 * 185.12878 * 24 22 21 27 27 H 1.48503 * 109.46952 * 95.00157 * 26 24 22 28 28 H 1.48495 * 109.47483 * 215.00266 * 26 24 22 29 29 H 1.48498 * 109.47230 * 335.00887 * 26 24 22 30 30 N 1.31904 * 119.57808 * 158.76445 * 17 16 14 31 31 H 1.08997 * 109.47015 * 299.21186 * 1 2 3 32 32 H 1.08993 * 109.47307 * 59.21618 * 1 2 3 33 33 H 1.09004 * 109.47011 * 179.21928 * 1 2 3 34 34 H 1.08999 * 110.66525 * 278.15772 * 7 6 4 35 35 H 1.09000 * 110.66634 * 41.28168 * 7 6 4 36 36 H 1.09000 * 110.72226 * 204.22940 * 8 7 6 37 37 H 1.09002 * 110.72275 * 80.94451 * 8 7 6 38 38 H 1.09005 * 110.30824 * 263.03827 * 9 8 7 39 39 H 1.08998 * 110.30972 * 140.87788 * 9 8 7 40 40 H 1.08994 * 109.91740 * 333.50944 * 10 6 4 41 41 H 1.08996 * 109.91489 * 94.80300 * 10 6 4 42 42 H 1.08996 * 110.72360 * 277.13642 * 11 4 2 43 43 H 1.09002 * 110.71572 * 153.86966 * 11 4 2 44 44 H 1.08996 * 109.88379 * 218.38979 * 12 11 4 45 45 H 1.09005 * 109.88218 * 97.22159 * 12 11 4 46 46 H 0.97002 * 120.00360 * 3.74860 * 16 14 13 47 47 H 1.08000 * 120.25279 * 359.97438 * 18 17 16 48 48 H 1.07996 * 120.66494 * 179.97438 * 19 18 17 49 49 H 1.08006 * 120.43444 * 179.97438 * 20 19 18 50 50 H 0.97007 * 119.99647 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7755 -1.2267 5 1 1.4546 -1.6484 -1.4407 6 7 2.1666 0.0995 -2.4028 7 6 2.8501 -0.5910 -3.5263 8 6 2.4007 0.2206 -4.7673 9 6 0.9304 0.5677 -4.4394 10 6 0.8231 0.4576 -2.9071 11 6 3.4803 -1.1970 -0.7318 12 6 3.2509 -1.4739 0.7689 13 7 2.0431 -0.7373 1.1690 14 6 1.4953 -0.7366 2.4004 15 8 0.4904 -0.0878 2.6184 16 7 2.0614 -1.4552 3.3902 17 6 1.4529 -1.5174 4.6411 18 6 0.5392 -0.5285 5.0133 19 6 -0.0653 -0.5918 6.2594 20 6 0.2578 -1.6409 7.1014 21 6 1.1851 -2.6050 6.6690 22 6 1.5256 -3.6821 7.5181 23 1 1.1384 -3.7189 8.5256 24 6 2.3651 -4.7019 7.0530 25 7 2.9144 -4.6079 5.8703 26 14 2.7003 -6.1962 8.1226 27 1 1.7616 -7.2873 7.7569 28 1 4.0972 -6.6533 7.9107 29 1 2.5085 -5.8361 9.5504 30 7 1.7427 -2.5122 5.4574 31 1 -0.3633 0.5015 0.8970 32 1 -0.3633 0.5259 -0.8828 33 1 -0.3633 -1.0276 -0.0140 34 1 3.9323 -0.5426 -3.4063 35 1 2.5163 -1.6259 -3.6019 36 1 2.4613 -0.3886 -5.6692 37 1 2.9969 1.1270 -4.8719 38 1 0.2578 -0.1443 -4.9178 39 1 0.7001 1.5828 -4.7628 40 1 0.1069 -0.3194 -2.6399 41 1 0.5115 1.4138 -2.4871 42 1 4.1959 -0.3865 -0.8694 43 1 3.8149 -2.0993 -1.2437 44 1 4.1069 -1.1236 1.3456 45 1 3.1043 -2.5419 0.9306 46 1 2.8927 -1.9290 3.2312 47 1 0.3059 0.2796 4.3358 48 1 -0.7742 0.1628 6.5667 49 1 -0.1958 -1.7178 8.0786 50 1 3.4962 -5.3142 5.5483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881145254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:27 Heat of formation + Delta-G solvation = 18.089396 kcal Electronic energy + Delta-G solvation = -30485.626571 eV Core-core repulsion = 26512.594347 eV Total energy + Delta-G solvation = -3973.032224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.95423 -40.58425 -39.56561 -38.01785 -36.06763 -35.17464 -33.54209 -32.65731 -32.26585 -31.20153 -29.92110 -29.56494 -27.37972 -26.35772 -24.68886 -23.48992 -23.24224 -22.47511 -21.61851 -21.31564 -20.73438 -19.28753 -19.07296 -18.09366 -17.83773 -16.87757 -16.72059 -16.47742 -16.39869 -16.07578 -15.70947 -15.29993 -15.01298 -14.97489 -14.67324 -14.63285 -14.38753 -14.15190 -13.81244 -13.61130 -13.43755 -13.27097 -13.13692 -12.89108 -12.86685 -12.73132 -12.60085 -12.55138 -12.25865 -12.06856 -11.93430 -11.82886 -11.78017 -11.63124 -11.58387 -11.38298 -11.04349 -10.49984 -9.98423 -9.78465 -9.61634 -9.44379 -8.93249 -8.30410 -6.49904 0.82035 1.12475 1.36757 1.42431 1.54776 1.56658 2.09087 2.24515 2.77702 2.88476 2.99463 3.35520 3.55051 3.76464 3.92337 3.95267 3.98696 4.11630 4.15492 4.26543 4.33813 4.36984 4.40802 4.50142 4.59708 4.63378 4.67214 4.69586 4.75386 4.86327 4.90542 4.93437 4.95826 4.98107 5.01345 5.05634 5.10459 5.12515 5.20464 5.24888 5.27547 5.35123 5.43627 5.63498 5.70260 5.84844 5.92986 6.00817 6.05489 6.19755 6.29765 6.72584 6.85283 6.99070 7.47767 8.10776 8.45664 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.002422 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.547202 B =11559.383393 C =12707.123228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.078 0.922 4 C 0.074 3.926 5 H 0.056 0.944 6 N -0.511 5.511 7 C 0.034 3.966 8 C -0.120 4.120 9 C -0.130 4.130 10 C 0.027 3.973 11 C -0.106 4.106 12 C 0.089 3.911 13 N -0.629 5.629 14 C 0.723 3.277 15 O -0.592 6.592 16 N -0.654 5.654 17 C 0.363 3.637 18 C -0.327 4.327 19 C -0.049 4.049 20 C -0.308 4.308 21 C 0.245 3.755 22 C -0.466 4.466 23 H 0.092 0.908 24 C 0.025 3.975 25 N -0.754 5.754 26 Si 0.989 3.011 27 H -0.267 1.267 28 H -0.266 1.266 29 H -0.255 1.255 30 N -0.534 5.534 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.409 0.591 47 H 0.140 0.860 48 H 0.130 0.870 49 H 0.114 0.886 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 4.641 -22.200 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 H 0.096 0.904 4 C -0.036 4.036 5 H 0.074 0.926 6 N -0.236 5.236 7 C -0.094 4.094 8 C -0.158 4.158 9 C -0.168 4.168 10 C -0.101 4.101 11 C -0.144 4.144 12 C -0.033 4.033 13 N -0.368 5.368 14 C 0.425 3.575 15 O -0.472 6.472 16 N -0.301 5.301 17 C 0.127 3.873 18 C -0.352 4.352 19 C -0.074 4.074 20 C -0.331 4.331 21 C 0.118 3.882 22 C -0.498 4.498 23 H 0.110 0.890 24 C -0.196 4.196 25 N -0.376 5.376 26 Si 0.809 3.191 27 H -0.192 1.192 28 H -0.191 1.191 29 H -0.179 1.179 30 N -0.254 5.254 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.245 0.755 47 H 0.157 0.843 48 H 0.148 0.852 49 H 0.132 0.868 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.069 4.839 -22.267 23.148 hybrid contribution -0.753 -0.949 0.778 1.439 sum 3.317 3.891 -21.489 22.089 Atomic orbital electron populations 1.22245 0.94700 1.01602 1.03479 1.21684 0.94338 0.95375 0.82472 0.90371 1.22880 0.97137 0.93510 0.90047 0.92611 1.64724 1.16304 1.38239 1.04313 1.23314 1.00241 0.96185 0.89618 1.22482 0.95507 1.00531 0.97281 1.22423 0.97603 1.02825 0.93997 1.23052 0.90126 1.01038 0.95844 1.22631 0.96175 1.03774 0.91821 1.22286 0.86803 0.96637 0.97594 1.47596 1.30046 1.51863 1.07253 1.15390 0.82330 0.80069 0.79739 1.90700 1.27367 1.48115 1.80993 1.42175 1.27077 1.51813 1.09079 1.18556 0.91886 0.91148 0.85693 1.22039 1.08396 1.04727 1.00002 1.21188 0.96804 0.96506 0.92875 1.21893 1.08020 1.01015 1.02168 1.18704 0.88652 0.92426 0.88391 1.19930 1.25990 1.04156 0.99714 0.89021 1.26972 0.93760 1.02319 0.96580 1.70206 1.19018 1.31179 1.17180 0.85101 0.78335 0.76577 0.79086 1.19157 1.19071 1.17895 1.68036 1.30719 1.21016 1.05582 0.92014 0.89610 0.94254 0.88868 0.93438 0.89702 0.90607 0.90967 0.90375 0.93828 0.90489 0.88457 0.87739 0.90364 0.91291 0.75502 0.84257 0.85221 0.86831 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 8.18 71.98 0.59 -3.90 16 2 C 0.16 4.18 3.23 45.46 0.15 4.33 16 3 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.07 1.38 1.97 46.31 0.09 1.47 16 5 H 0.06 1.12 7.89 -2.38 -0.02 1.10 16 6 N -0.51 -8.09 5.15 -849.77 -4.37 -12.46 16 7 C 0.03 0.39 5.86 86.65 0.51 0.90 16 8 C -0.12 -1.15 7.06 31.80 0.22 -0.92 16 9 C -0.13 -1.42 6.93 31.47 0.22 -1.20 16 10 C 0.03 0.41 4.95 86.44 0.43 0.83 16 11 C -0.11 -1.65 5.76 31.78 0.18 -1.47 16 12 C 0.09 1.98 6.15 86.73 0.53 2.51 16 13 N -0.63 -18.98 3.24 -806.00 -2.61 -21.59 16 14 C 0.72 29.18 8.17 179.05 1.46 30.64 16 15 O -0.59 -27.22 10.65 -3.96 -0.04 -27.26 16 16 N -0.65 -28.64 5.37 -322.12 -1.73 -30.37 16 17 C 0.36 19.14 7.51 133.26 1.00 20.14 16 18 C -0.33 -16.89 8.89 22.72 0.20 -16.69 16 19 C -0.05 -2.42 10.15 22.39 0.23 -2.19 16 20 C -0.31 -16.13 9.83 22.87 0.22 -15.91 16 21 C 0.24 14.11 6.55 40.19 0.26 14.37 16 22 C -0.47 -25.65 9.13 23.46 0.21 -25.44 16 23 H 0.09 4.71 7.85 -2.91 -0.02 4.68 16 24 C 0.03 1.29 5.49 85.29 0.47 1.76 16 25 N -0.75 -39.97 11.48 21.84 0.25 -39.72 16 26 Si 0.99 37.98 29.56 68.60 2.03 40.01 16 27 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 28 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 29 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 30 N -0.53 -30.62 7.91 -186.37 -1.47 -32.10 16 31 H 0.06 2.14 5.88 -2.39 -0.01 2.13 16 32 H 0.09 1.87 5.41 -2.39 -0.01 1.85 16 33 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.09 0.92 8.05 -2.39 -0.02 0.91 16 35 H 0.05 0.55 8.02 -2.39 -0.02 0.53 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.04 0.71 6.75 -2.39 -0.02 0.69 16 41 H 0.08 1.22 7.54 -2.39 -0.02 1.21 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.41 16.30 7.82 -92.71 -0.72 15.57 16 47 H 0.14 7.18 5.17 -9.80 -0.05 7.13 16 48 H 0.13 5.38 8.06 -2.91 -0.02 5.35 16 49 H 0.11 5.41 8.06 -2.91 -0.02 5.38 16 50 H 0.28 13.21 8.29 -92.70 -0.77 12.44 16 Total: -1.00 -69.91 386.69 -0.78 -70.69 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: 0.19 Total: 43.57 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.98 Total: 9.24 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -9.94 Total: -136.25 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.04 Total: -27.26 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -69.91 -0.78 -70.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881145254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.780 kcal (2) G-P(sol) polarization free energy of solvation -69.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds