Wall clock time and date at job start Wed Apr 1 2020 03:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.51404 * 2 1 4 4 C 1.53238 * 109.49166 * 120.06880 * 2 1 3 5 5 N 1.47085 * 108.52211 * 173.78912 * 4 2 1 6 6 C 1.34769 * 120.87979 * 128.83375 * 5 4 2 7 7 O 1.21587 * 120.00534 * 353.97314 * 6 5 4 8 8 N 1.34785 * 119.99932 * 173.96589 * 6 5 4 9 9 C 1.46496 * 119.99778 * 186.26027 * 8 6 5 10 10 C 1.53004 * 109.46869 * 183.90648 * 9 8 6 11 11 C 1.50699 * 115.54682 * 305.94978 * 10 9 8 12 12 H 1.08000 * 120.00338 * 144.08569 * 11 10 9 13 13 C 1.37871 * 120.00205 * 324.07976 * 11 10 9 14 14 N 1.31515 * 120.00348 * 351.50639 * 13 11 10 15 15 Si 1.86804 * 120.00164 * 171.50575 * 13 11 10 16 16 H 1.48498 * 109.47210 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47338 * 120.00260 * 15 13 11 18 18 H 1.48496 * 109.47089 * 239.99912 * 15 13 11 19 19 C 1.53000 * 117.50226 * 160.28102 * 10 9 8 20 20 C 1.52997 * 117.50249 * 91.61727 * 10 9 8 21 21 C 1.47085 * 118.23594 * 308.81658 * 5 4 2 22 22 C 1.53234 * 108.52194 * 51.18295 * 21 5 4 23 23 N 1.46898 * 109.34016 * 306.16900 * 22 21 5 24 24 C 1.39168 * 111.00010 * 187.25246 * 23 22 21 25 25 C 1.39480 * 120.86707 * 123.67297 * 24 23 22 26 26 C 1.37895 * 119.06877 * 179.72999 * 25 24 23 27 27 N 1.31994 * 120.84082 * 0.55707 * 26 25 24 28 28 C 1.31992 * 121.91046 * 359.71801 * 27 26 25 29 29 C 1.37887 * 120.84591 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47303 * 299.93484 * 1 2 3 31 31 H 1.09004 * 109.46677 * 59.93575 * 1 2 3 32 32 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.62794 * 54.08366 * 4 2 1 34 34 H 1.08994 * 109.62655 * 293.49899 * 4 2 1 35 35 H 0.96996 * 119.99465 * 6.26918 * 8 6 5 36 36 H 1.09003 * 109.47715 * 303.90394 * 9 8 6 37 37 H 1.08995 * 109.47727 * 63.90826 * 9 8 6 38 38 H 0.96995 * 120.00993 * 185.01803 * 14 13 11 39 39 H 1.09004 * 117.49548 * 359.97438 * 19 10 9 40 40 H 1.08997 * 117.50128 * 145.01571 * 19 10 9 41 41 H 1.08998 * 117.50452 * 214.97763 * 20 10 9 42 42 H 1.09002 * 117.49853 * 359.97438 * 20 10 9 43 43 H 1.09002 * 109.62418 * 170.89043 * 21 5 4 44 44 H 1.09000 * 109.62523 * 291.27575 * 21 5 4 45 45 H 1.09001 * 109.49442 * 66.12604 * 22 21 5 46 46 H 1.08998 * 109.49418 * 186.17910 * 22 21 5 47 47 H 1.08003 * 120.46084 * 359.97438 * 25 24 23 48 48 H 1.07994 * 119.57614 * 180.25333 * 26 25 24 49 49 H 1.08003 * 119.58016 * 180.02562 * 28 27 26 50 50 H 1.08002 * 120.47064 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7238 1.2502 5 7 3.5042 -0.8433 1.1554 6 6 4.2976 -0.4495 2.1711 7 8 3.8162 0.1116 3.1364 8 7 5.6249 -0.6779 2.1171 9 6 6.4679 -0.3756 3.2764 10 6 7.9339 -0.6323 2.9217 11 6 8.2406 -2.0045 2.3793 12 1 8.9897 -2.1264 1.6108 13 6 7.5651 -3.1042 2.8640 14 7 6.7774 -2.9837 3.9103 15 14 7.7685 -4.7657 2.0347 16 1 8.7031 -4.6355 0.8880 17 1 8.3159 -5.7422 3.0103 18 1 6.4487 -5.2403 1.5469 19 6 8.9992 0.0376 3.7919 20 6 8.7436 0.5427 2.3697 21 6 4.0782 -1.4042 -0.0772 22 6 3.4867 -0.6536 -1.2751 23 7 2.0203 -0.6938 -1.1985 24 6 1.4460 -0.1652 -2.3507 25 6 0.5491 -0.9147 -3.1118 26 6 -0.0023 -0.3522 -4.2437 27 7 0.3175 0.8735 -4.6147 28 6 1.1661 1.6124 -3.9247 29 6 1.7564 1.1259 -2.7774 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5149 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.5957 -1.7170 1.3062 34 1 1.7776 -0.1504 2.1388 35 1 6.0218 -1.0424 1.3106 36 1 6.3396 0.6701 3.5562 37 1 6.1792 -1.0132 4.1119 38 1 6.3594 -3.7694 4.2959 39 1 8.6556 0.6617 4.6169 40 1 9.9220 -0.5139 3.9718 41 1 9.4983 0.3233 1.6145 42 1 8.2317 1.4986 2.2588 43 1 5.1611 -1.2805 -0.0661 44 1 3.8313 -2.4636 -0.1469 45 1 3.8235 0.3829 -1.2573 46 1 3.8161 -1.1273 -2.1998 47 1 0.2870 -1.9200 -2.8165 48 1 -0.7008 -0.9237 -4.8368 49 1 1.4005 2.6111 -4.2625 50 1 2.4496 1.7359 -2.2172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883620262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:32 Heat of formation + Delta-G solvation = 60.831035 kcal Electronic energy + Delta-G solvation = -31024.257531 eV Core-core repulsion = 27053.078723 eV Total energy + Delta-G solvation = -3971.178808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.06457 -39.69631 -38.18423 -36.72528 -34.73727 -33.47351 -32.53634 -32.16353 -31.54651 -31.00749 -27.85828 -27.00361 -25.70557 -24.70168 -23.78555 -22.93148 -22.78271 -21.25321 -20.51377 -19.34063 -19.00497 -18.04373 -17.22461 -16.52224 -16.30654 -16.01240 -15.78297 -15.57024 -15.11688 -14.78532 -14.66073 -14.33034 -14.13987 -13.97289 -13.80224 -13.67420 -13.26575 -13.01434 -12.82313 -12.50922 -12.27316 -12.09405 -11.94887 -11.74435 -11.59389 -11.36756 -11.29540 -11.17574 -11.10908 -10.79488 -10.53778 -10.29883 -9.79605 -9.76304 -9.66516 -9.44446 -9.30990 -9.11890 -8.93769 -8.85815 -8.41047 -8.24088 -7.73282 -6.08568 -4.21594 0.85716 0.92491 3.05561 3.16453 3.27502 3.29214 3.43296 3.52724 3.90507 4.19253 4.25598 4.46004 4.58349 4.69209 4.73703 4.77740 4.89128 4.96604 4.99876 5.07227 5.11779 5.21393 5.27698 5.44876 5.46240 5.50265 5.51859 5.56425 5.65195 5.80699 5.86942 5.90327 5.96008 6.00912 6.10934 6.29337 6.32580 6.53712 6.58882 6.60421 6.71401 6.75360 6.89273 6.97330 7.05879 7.25640 7.47654 7.58967 7.67842 7.70748 7.91845 8.29696 8.70790 8.85317 9.36131 9.40304 10.86671 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.002914 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.507594 B = 9608.083237 C = 9939.277761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 H 0.052 0.948 4 C 0.144 3.856 5 N -0.640 5.640 6 C 0.704 3.296 7 O -0.606 6.606 8 N -0.706 5.706 9 C 0.179 3.821 10 C 0.038 3.962 11 C -0.501 4.501 12 H 0.062 0.938 13 C 0.077 3.923 14 N -0.865 5.865 15 Si 0.888 3.112 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.195 4.195 20 C -0.212 4.212 21 C 0.119 3.881 22 C 0.047 3.953 23 N -0.501 5.501 24 C 0.149 3.851 25 C -0.151 4.151 26 C 0.102 3.898 27 N -0.493 5.493 28 C 0.108 3.892 29 C -0.206 4.206 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.395 0.605 36 H 0.024 0.976 37 H 0.107 0.893 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.141 0.859 48 H 0.157 0.843 49 H 0.153 0.847 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.226 4.251 -13.242 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 H 0.070 0.930 4 C 0.020 3.980 5 N -0.379 5.379 6 C 0.406 3.594 7 O -0.486 6.486 8 N -0.358 5.358 9 C 0.055 3.945 10 C 0.038 3.962 11 C -0.538 4.538 12 H 0.080 0.920 13 C -0.128 4.128 14 N -0.500 5.500 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.234 4.234 20 C -0.250 4.250 21 C -0.006 4.006 22 C -0.080 4.080 23 N -0.223 5.223 24 C 0.046 3.954 25 C -0.172 4.172 26 C -0.055 4.055 27 N -0.202 5.202 28 C -0.049 4.049 29 C -0.228 4.228 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.231 0.769 36 H 0.042 0.958 37 H 0.124 0.876 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.158 0.842 48 H 0.174 0.826 49 H 0.170 0.830 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.195 4.387 -13.072 19.085 hybrid contribution 1.177 -0.660 -0.076 1.352 sum -12.018 3.727 -13.148 18.198 Atomic orbital electron populations 1.21836 0.93327 1.03004 1.02161 1.22156 0.95840 0.96037 0.89277 0.93024 1.21457 0.79225 1.00654 0.96683 1.47240 1.05951 1.68047 1.16619 1.15879 0.81947 0.79433 0.82153 1.90825 1.74673 1.49125 1.33978 1.45105 1.04547 1.67240 1.18945 1.20901 0.88047 0.96967 0.88550 1.19197 0.88387 0.91379 0.97272 1.20519 1.21678 0.89405 1.22185 0.92031 1.24973 0.94289 0.98860 0.94718 1.69849 1.30161 1.29367 1.20647 0.86589 0.78010 0.83999 0.79810 1.19652 1.20926 1.20760 1.22914 1.03212 1.05135 0.92099 1.22952 1.05783 0.99155 0.97069 1.21634 0.98242 0.97955 0.82729 1.22588 0.85380 1.00260 0.99776 1.59541 1.07290 1.55251 1.00255 1.19107 0.93769 0.91020 0.91470 1.22126 0.97807 1.01574 0.95700 1.22722 0.97304 0.91407 0.94047 1.67714 1.13864 1.06677 1.31963 1.22595 0.91997 0.99293 0.91057 1.22748 1.03143 0.97217 0.99689 0.91314 0.92637 0.91299 0.91314 0.88322 0.76893 0.95822 0.87556 0.92685 0.91491 0.90193 0.90685 0.91426 0.89147 0.90697 0.93563 0.89335 0.84164 0.82593 0.82954 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.88 37.16 0.33 -1.04 16 2 C 0.07 0.84 2.37 -67.59 -0.16 0.68 16 3 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 4 C 0.14 2.01 5.90 -3.60 -0.02 1.99 16 5 N -0.64 -10.45 3.01 -178.19 -0.54 -10.99 16 6 C 0.70 14.67 8.30 -86.92 -0.72 13.94 16 7 O -0.61 -14.62 15.79 5.29 0.08 -14.54 16 8 N -0.71 -14.97 5.23 -65.23 -0.34 -15.31 16 9 C 0.18 4.21 4.77 -4.04 -0.02 4.19 16 10 C 0.04 0.89 1.99 -155.66 -0.31 0.58 16 11 C -0.50 -12.43 8.28 -34.44 -0.29 -12.71 16 12 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 13 C 0.08 1.92 5.20 -17.82 -0.09 1.82 16 14 N -0.86 -22.77 10.70 55.43 0.59 -22.18 16 15 Si 0.89 19.52 29.55 -169.99 -5.02 14.50 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 19 C -0.19 -4.25 9.96 -26.69 -0.27 -4.52 16 20 C -0.21 -4.37 9.92 -26.69 -0.26 -4.64 16 21 C 0.12 1.60 6.53 -3.60 -0.02 1.58 16 22 C 0.05 0.53 5.20 -3.70 -0.02 0.51 16 23 N -0.50 -5.42 4.47 -163.09 -0.73 -6.15 16 24 C 0.15 1.49 3.04 -83.60 -0.25 1.23 16 25 C -0.15 -1.35 9.89 -39.24 -0.39 -1.74 16 26 C 0.10 0.89 11.17 -17.61 -0.20 0.70 16 27 N -0.49 -5.12 10.36 -13.36 -0.14 -5.26 16 28 C 0.11 1.01 11.17 -17.61 -0.20 0.81 16 29 C -0.21 -1.98 8.89 -39.25 -0.35 -2.33 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.53 6.97 -51.93 -0.36 0.17 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.52 7.04 -51.93 -0.37 1.15 16 35 H 0.39 7.92 5.48 -40.82 -0.22 7.69 16 36 H 0.02 0.56 8.06 -51.93 -0.42 0.14 16 37 H 0.11 2.86 5.99 -51.93 -0.31 2.55 16 38 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.25 5.75 -51.93 -0.30 0.95 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.53 7.29 -51.93 -0.38 0.15 16 46 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 47 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 48 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 49 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 50 H 0.13 1.20 7.35 -52.49 -0.39 0.82 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -29.55 397.32 -11.12 -40.66 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.77 Total: 12.20 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.24 Total: 1.08 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -1.15 Total: -59.89 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.55 -11.12 -40.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883620262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.494 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds