Wall clock time and date at job start Wed Apr 1 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.51404 * 2 1 4 4 C 1.53238 * 109.49166 * 120.06880 * 2 1 3 5 5 N 1.47085 * 108.52211 * 173.78912 * 4 2 1 6 6 C 1.34769 * 120.87979 * 128.83375 * 5 4 2 7 7 O 1.21587 * 120.00534 * 353.97314 * 6 5 4 8 8 N 1.34785 * 119.99932 * 173.96589 * 6 5 4 9 9 C 1.46496 * 119.99778 * 186.26027 * 8 6 5 10 10 C 1.53004 * 109.46869 * 183.90648 * 9 8 6 11 11 C 1.50699 * 115.54682 * 305.94978 * 10 9 8 12 12 H 1.08000 * 120.00338 * 144.08569 * 11 10 9 13 13 C 1.37871 * 120.00205 * 324.07976 * 11 10 9 14 14 N 1.31515 * 120.00348 * 351.50639 * 13 11 10 15 15 Si 1.86804 * 120.00164 * 171.50575 * 13 11 10 16 16 H 1.48498 * 109.47210 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47338 * 120.00260 * 15 13 11 18 18 H 1.48496 * 109.47089 * 239.99912 * 15 13 11 19 19 C 1.53000 * 117.50226 * 160.28102 * 10 9 8 20 20 C 1.52997 * 117.50249 * 91.61727 * 10 9 8 21 21 C 1.47085 * 118.23594 * 308.81658 * 5 4 2 22 22 C 1.53234 * 108.52194 * 51.18295 * 21 5 4 23 23 N 1.46898 * 109.34016 * 306.16900 * 22 21 5 24 24 C 1.39168 * 111.00010 * 187.25246 * 23 22 21 25 25 C 1.39480 * 120.86707 * 123.67297 * 24 23 22 26 26 C 1.37895 * 119.06877 * 179.72999 * 25 24 23 27 27 N 1.31994 * 120.84082 * 0.55707 * 26 25 24 28 28 C 1.31992 * 121.91046 * 359.71801 * 27 26 25 29 29 C 1.37887 * 120.84591 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47303 * 299.93484 * 1 2 3 31 31 H 1.09004 * 109.46677 * 59.93575 * 1 2 3 32 32 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.62794 * 54.08366 * 4 2 1 34 34 H 1.08994 * 109.62655 * 293.49899 * 4 2 1 35 35 H 0.96996 * 119.99465 * 6.26918 * 8 6 5 36 36 H 1.09003 * 109.47715 * 303.90394 * 9 8 6 37 37 H 1.08995 * 109.47727 * 63.90826 * 9 8 6 38 38 H 0.96995 * 120.00993 * 185.01803 * 14 13 11 39 39 H 1.09004 * 117.49548 * 359.97438 * 19 10 9 40 40 H 1.08997 * 117.50128 * 145.01571 * 19 10 9 41 41 H 1.08998 * 117.50452 * 214.97763 * 20 10 9 42 42 H 1.09002 * 117.49853 * 359.97438 * 20 10 9 43 43 H 1.09002 * 109.62418 * 170.89043 * 21 5 4 44 44 H 1.09000 * 109.62523 * 291.27575 * 21 5 4 45 45 H 1.09001 * 109.49442 * 66.12604 * 22 21 5 46 46 H 1.08998 * 109.49418 * 186.17910 * 22 21 5 47 47 H 1.08003 * 120.46084 * 359.97438 * 25 24 23 48 48 H 1.07994 * 119.57614 * 180.25333 * 26 25 24 49 49 H 1.08003 * 119.58016 * 180.02562 * 28 27 26 50 50 H 1.08002 * 120.47064 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7238 1.2502 5 7 3.5042 -0.8433 1.1554 6 6 4.2976 -0.4495 2.1711 7 8 3.8162 0.1116 3.1364 8 7 5.6249 -0.6779 2.1171 9 6 6.4679 -0.3756 3.2764 10 6 7.9339 -0.6323 2.9217 11 6 8.2406 -2.0045 2.3793 12 1 8.9897 -2.1264 1.6108 13 6 7.5651 -3.1042 2.8640 14 7 6.7774 -2.9837 3.9103 15 14 7.7685 -4.7657 2.0347 16 1 8.7031 -4.6355 0.8880 17 1 8.3159 -5.7422 3.0103 18 1 6.4487 -5.2403 1.5469 19 6 8.9992 0.0376 3.7919 20 6 8.7436 0.5427 2.3697 21 6 4.0782 -1.4042 -0.0772 22 6 3.4867 -0.6536 -1.2751 23 7 2.0203 -0.6938 -1.1985 24 6 1.4460 -0.1652 -2.3507 25 6 0.5491 -0.9147 -3.1118 26 6 -0.0023 -0.3522 -4.2437 27 7 0.3175 0.8735 -4.6147 28 6 1.1661 1.6124 -3.9247 29 6 1.7564 1.1259 -2.7774 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5149 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.5957 -1.7170 1.3062 34 1 1.7776 -0.1504 2.1388 35 1 6.0218 -1.0424 1.3106 36 1 6.3396 0.6701 3.5562 37 1 6.1792 -1.0132 4.1119 38 1 6.3594 -3.7694 4.2959 39 1 8.6556 0.6617 4.6169 40 1 9.9220 -0.5139 3.9718 41 1 9.4983 0.3233 1.6145 42 1 8.2317 1.4986 2.2588 43 1 5.1611 -1.2805 -0.0661 44 1 3.8313 -2.4636 -0.1469 45 1 3.8235 0.3829 -1.2573 46 1 3.8161 -1.1273 -2.1998 47 1 0.2870 -1.9200 -2.8165 48 1 -0.7008 -0.9237 -4.8368 49 1 1.4005 2.6111 -4.2625 50 1 2.4496 1.7359 -2.2172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883620262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:31 Heat of formation + Delta-G solvation = 43.652320 kcal Electronic energy + Delta-G solvation = -31025.002456 eV Core-core repulsion = 27053.078723 eV Total energy + Delta-G solvation = -3971.923733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96703 -40.97081 -39.35610 -38.42665 -36.02326 -34.93265 -34.14804 -33.62862 -32.24891 -31.88993 -28.81181 -28.43647 -27.52721 -26.17797 -24.55744 -23.93892 -23.63799 -22.95471 -21.58691 -21.16023 -20.39067 -19.39093 -18.28005 -17.92906 -17.26660 -17.26118 -16.77556 -16.73189 -16.51858 -16.39723 -15.74300 -15.59170 -15.29187 -15.24193 -14.87569 -14.64765 -14.58399 -14.36103 -14.26804 -13.62896 -13.52454 -13.36363 -13.09893 -13.01825 -12.89384 -12.76270 -12.62145 -12.44741 -12.36418 -12.25667 -12.15010 -12.04382 -11.48304 -11.08816 -10.98436 -10.64828 -10.50184 -10.46837 -10.17597 -10.11261 -10.01207 -9.70400 -9.29986 -7.99046 -6.17988 0.15252 0.22559 1.41519 1.47894 1.56540 1.70736 2.27539 2.42775 2.52198 2.83290 2.96675 3.21378 3.58245 3.62975 3.68615 3.74057 3.96222 4.01290 4.05114 4.07277 4.12485 4.22548 4.27771 4.29755 4.49325 4.53564 4.54813 4.63124 4.72453 4.75066 4.77934 4.80929 4.82786 4.85323 4.90794 4.95334 4.96253 5.10698 5.18850 5.27131 5.29581 5.50682 5.53116 5.60524 5.64655 5.72458 5.87765 5.94960 6.03723 6.21364 6.39621 6.82616 7.02969 7.19371 7.46173 7.71978 8.94148 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.002914 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.507594 B = 9608.083237 C = 9939.277761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.084 3.916 3 H 0.040 0.960 4 C 0.142 3.858 5 N -0.634 5.634 6 C 0.699 3.301 7 O -0.646 6.646 8 N -0.703 5.703 9 C 0.193 3.807 10 C 0.012 3.988 11 C -0.506 4.506 12 H 0.060 0.940 13 C 0.039 3.961 14 N -0.892 5.892 15 Si 0.946 3.054 16 H -0.263 1.263 17 H -0.290 1.290 18 H -0.280 1.280 19 C -0.198 4.198 20 C -0.186 4.186 21 C 0.116 3.884 22 C 0.055 3.945 23 N -0.498 5.498 24 C 0.137 3.863 25 C -0.148 4.148 26 C 0.102 3.898 27 N -0.513 5.513 28 C 0.102 3.898 29 C -0.210 4.210 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.016 0.984 37 H 0.070 0.930 38 H 0.258 0.742 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.107 0.893 47 H 0.154 0.846 48 H 0.182 0.818 49 H 0.170 0.830 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 3.886 -15.717 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.058 0.942 4 C 0.018 3.982 5 N -0.372 5.372 6 C 0.400 3.600 7 O -0.529 6.529 8 N -0.356 5.356 9 C 0.068 3.932 10 C 0.012 3.988 11 C -0.543 4.543 12 H 0.078 0.922 13 C -0.163 4.163 14 N -0.529 5.529 15 Si 0.772 3.228 16 H -0.187 1.187 17 H -0.217 1.217 18 H -0.206 1.206 19 C -0.237 4.237 20 C -0.223 4.223 21 C -0.007 4.007 22 C -0.072 4.072 23 N -0.220 5.220 24 C 0.035 3.965 25 C -0.169 4.169 26 C -0.055 4.055 27 N -0.223 5.223 28 C -0.054 4.054 29 C -0.232 4.232 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.238 0.762 36 H 0.034 0.966 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.125 0.875 47 H 0.171 0.829 48 H 0.199 0.801 49 H 0.187 0.813 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.729 4.015 -15.609 21.172 hybrid contribution 1.327 -0.526 0.677 1.580 sum -12.402 3.489 -14.932 19.722 Atomic orbital electron populations 1.21768 0.91538 1.03597 1.02540 1.21998 0.97070 0.94858 0.88413 0.94218 1.21593 0.77812 1.01226 0.97529 1.47292 1.06607 1.66904 1.16391 1.16069 0.81995 0.79277 0.82618 1.90787 1.75303 1.50908 1.35899 1.44940 1.04729 1.67464 1.18502 1.20522 0.88806 0.95478 0.88354 1.19233 0.88370 0.92003 0.99237 1.20696 1.21471 0.90255 1.21917 0.92174 1.25561 0.94097 1.01676 0.94998 1.70022 1.31215 1.29680 1.21959 0.85697 0.77948 0.80260 0.78908 1.18683 1.21652 1.20585 1.22935 1.02453 1.05125 0.93190 1.22937 1.04611 0.98432 0.96293 1.21801 0.98173 0.98458 0.82276 1.22500 0.85708 0.99857 0.99128 1.59512 1.06969 1.55157 1.00404 1.19167 0.94543 0.91492 0.91337 1.22269 0.97174 1.02012 0.95442 1.23155 0.97231 0.91057 0.94074 1.67765 1.14426 1.07531 1.32585 1.22885 0.91649 1.00028 0.90845 1.22771 1.03327 0.97198 0.99902 0.90808 0.92352 0.90562 0.90402 0.90159 0.76227 0.96577 0.91168 0.93263 0.90876 0.90439 0.89602 0.90046 0.89550 0.90171 0.93844 0.87474 0.82860 0.80083 0.81279 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.88 71.98 0.64 -1.71 16 2 C 0.08 1.83 2.37 44.99 0.11 1.93 16 3 H 0.04 0.97 7.94 -2.39 -0.02 0.95 16 4 C 0.14 3.93 5.90 86.35 0.51 4.44 16 5 N -0.63 -20.72 3.01 -835.93 -2.52 -23.24 16 6 C 0.70 29.74 8.30 179.05 1.49 31.23 16 7 O -0.65 -32.28 15.79 -3.99 -0.06 -32.34 16 8 N -0.70 -30.30 5.23 -478.53 -2.50 -32.80 16 9 C 0.19 9.30 4.77 86.38 0.41 9.72 16 10 C 0.01 0.57 1.99 -52.93 -0.11 0.46 16 11 C -0.51 -24.91 8.28 25.60 0.21 -24.70 16 12 H 0.06 2.93 7.83 -2.91 -0.02 2.91 16 13 C 0.04 1.93 5.20 84.65 0.44 2.37 16 14 N -0.89 -47.88 10.70 21.45 0.23 -47.65 16 15 Si 0.95 39.82 29.55 68.60 2.03 41.85 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 17 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 19 C -0.20 -8.54 9.96 30.62 0.30 -8.23 16 20 C -0.19 -7.35 9.92 30.62 0.30 -7.05 16 21 C 0.12 3.02 6.53 86.35 0.56 3.58 16 22 C 0.06 1.14 5.20 86.38 0.45 1.59 16 23 N -0.50 -9.86 4.47 -669.89 -3.00 -12.86 16 24 C 0.14 2.44 3.04 38.58 0.12 2.56 16 25 C -0.15 -2.25 9.89 22.49 0.22 -2.03 16 26 C 0.10 1.51 11.17 84.59 0.94 2.45 16 27 N -0.51 -9.57 10.36 -196.17 -2.03 -11.61 16 28 C 0.10 1.73 11.17 84.59 0.94 2.68 16 29 C -0.21 -3.68 8.89 22.49 0.20 -3.48 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.06 0.99 6.97 -2.38 -0.02 0.98 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.54 7.04 -2.39 -0.02 2.52 16 35 H 0.40 16.08 5.48 -92.71 -0.51 15.57 16 36 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 37 H 0.07 3.94 5.99 -2.39 -0.01 3.92 16 38 H 0.26 13.55 8.32 -92.71 -0.77 12.78 16 39 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 40 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.09 2.32 5.75 -2.39 -0.01 2.30 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 0.93 7.29 -2.39 -0.02 0.92 16 46 H 0.11 1.85 8.09 -2.39 -0.02 1.83 16 47 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 50 H 0.13 2.24 7.35 -2.91 -0.02 2.22 16 Total: -1.00 -63.62 397.32 0.33 -63.29 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: 0.43 Total: 39.52 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 7.75 Total: 15.83 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -9.82 Total: -128.14 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.06 Total: -32.34 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -63.62 0.33 -63.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883620262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.940 kcal (2) G-P(sol) polarization free energy of solvation -63.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds