Wall clock time and date at job start Wed Apr 1 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.51245 * 2 1 4 4 C 1.53237 * 109.49502 * 239.93394 * 2 1 3 5 5 N 1.47076 * 108.68425 * 186.11075 * 4 2 1 6 6 C 1.34779 * 120.88596 * 231.28257 * 5 4 2 7 7 O 1.21588 * 119.99804 * 5.45854 * 6 5 4 8 8 N 1.34773 * 120.00473 * 185.45651 * 6 5 4 9 9 C 1.46496 * 120.00190 * 175.10931 * 8 6 5 10 10 C 1.52998 * 109.47315 * 184.99061 * 9 8 6 11 11 C 1.50703 * 115.55188 * 282.51988 * 10 9 8 12 12 H 1.07996 * 120.00289 * 143.67696 * 11 10 9 13 13 C 1.37879 * 119.99454 * 323.67197 * 11 10 9 14 14 N 1.31508 * 120.00289 * 338.91713 * 13 11 10 15 15 Si 1.86802 * 119.99659 * 158.91667 * 13 11 10 16 16 H 1.48497 * 109.47161 * 59.99987 * 15 13 11 17 17 H 1.48503 * 109.47245 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47063 * 299.99789 * 15 13 11 19 19 C 1.52998 * 117.50187 * 136.80555 * 10 9 8 20 20 C 1.52997 * 60.00222 * 252.51181 * 19 10 9 21 21 C 1.47480 * 117.98336 * 51.10282 * 5 4 2 22 22 C 1.53236 * 108.62326 * 308.92302 * 21 5 4 23 23 N 1.46897 * 109.34132 * 53.84937 * 22 21 5 24 24 C 1.39173 * 111.00224 * 172.74675 * 23 22 21 25 25 C 1.39473 * 120.86449 * 70.55502 * 24 23 22 26 26 C 1.37902 * 119.06839 * 179.73101 * 25 24 23 27 27 N 1.31995 * 120.83964 * 0.56144 * 26 25 24 28 28 C 1.31998 * 121.91139 * 359.70958 * 27 26 25 29 29 C 1.37903 * 120.84143 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.46683 * 177.49812 * 1 2 3 31 31 H 1.08998 * 109.47008 * 297.49580 * 1 2 3 32 32 H 1.08994 * 109.47069 * 57.49833 * 1 2 3 33 33 H 1.08998 * 109.62776 * 305.91622 * 4 2 1 34 34 H 1.08998 * 109.62415 * 66.30499 * 4 2 1 35 35 H 0.97010 * 119.99807 * 355.11639 * 8 6 5 36 36 H 1.08999 * 109.47041 * 304.99005 * 9 8 6 37 37 H 1.09001 * 109.46956 * 64.99050 * 9 8 6 38 38 H 0.97001 * 120.00213 * 185.01038 * 14 13 11 39 39 H 1.09004 * 117.49816 * 0.02562 * 19 10 9 40 40 H 1.09000 * 117.50038 * 145.01755 * 19 10 9 41 41 H 1.09003 * 117.49493 * 252.50886 * 20 19 10 42 42 H 1.08996 * 117.49609 * 107.48636 * 20 19 10 43 43 H 1.08999 * 109.55770 * 189.19172 * 21 5 4 44 44 H 1.08996 * 109.75490 * 68.76611 * 21 5 4 45 45 H 1.09001 * 109.49425 * 293.89132 * 22 21 5 46 46 H 1.08997 * 109.51585 * 173.82510 * 22 21 5 47 47 H 1.08001 * 120.47007 * 359.97438 * 25 24 23 48 48 H 1.07996 * 119.58054 * 180.25406 * 26 25 24 49 49 H 1.07996 * 119.58077 * 179.97438 * 28 27 26 50 50 H 1.07993 * 120.46545 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2502 5 7 3.5045 -0.8430 -1.1601 6 6 4.2948 -0.4472 -2.1776 7 8 3.8089 0.1062 -3.1451 8 7 5.6237 -0.6649 -2.1228 9 6 6.4685 -0.3327 -3.2727 10 6 7.9033 -0.7888 -3.0002 11 6 8.7028 0.0963 -2.0791 12 1 9.4054 -0.3410 -1.3852 13 6 8.5375 1.4645 -2.1225 14 7 8.0297 2.0318 -3.1948 15 14 9.0348 2.5122 -0.6582 16 1 10.4848 2.3344 -0.3919 17 1 8.7569 3.9406 -0.9543 18 1 8.2572 2.0946 0.5362 19 6 8.6521 -1.4835 -4.1392 20 6 8.1658 -2.2948 -2.9366 21 6 4.0783 -1.4041 0.0772 22 6 3.4867 -0.6536 1.2751 23 7 2.0203 -0.6938 1.1985 24 6 1.4459 -0.1652 2.3507 25 6 1.5101 1.2017 2.6199 26 6 0.9234 1.6864 3.7699 27 7 0.3173 0.8734 4.6148 28 6 0.2400 -0.4265 4.3985 29 6 0.7964 -0.9896 3.2693 30 1 -0.3633 -1.0267 -0.0449 31 1 -0.3633 0.4744 0.9116 32 1 -0.3633 0.5522 -0.8667 33 1 1.5959 -1.7169 -1.3062 34 1 1.7746 -0.1519 -2.1390 35 1 6.0209 -1.0417 -1.3220 36 1 6.0889 -0.8385 -4.1605 37 1 6.4544 0.7451 -3.4345 38 1 7.9804 2.9987 -3.2548 39 1 8.1227 -1.6153 -5.0829 40 1 9.7233 -1.3003 -4.2228 41 1 8.9172 -2.6452 -2.2290 42 1 7.3164 -2.9606 -3.0890 43 1 5.1611 -1.2804 0.0661 44 1 3.8314 -2.4632 0.1505 45 1 3.8235 0.3829 1.2574 46 1 3.8157 -1.1271 2.2001 47 1 2.0089 1.8719 1.9354 48 1 0.9647 2.7441 3.9845 49 1 -0.2647 -1.0571 5.1154 50 1 0.7293 -2.0538 3.0983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883620263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:36 Heat of formation + Delta-G solvation = 61.598589 kcal Electronic energy + Delta-G solvation = -30890.213701 eV Core-core repulsion = 26919.068177 eV Total energy + Delta-G solvation = -3971.145524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10217 -39.77973 -38.26130 -36.76434 -34.82373 -33.53423 -32.54433 -32.28621 -31.53036 -31.08782 -27.92207 -27.07895 -25.76268 -24.69097 -23.82083 -23.04721 -22.80074 -21.29181 -20.54976 -19.37212 -19.13316 -18.13827 -17.30301 -16.54906 -16.31669 -15.97891 -15.85197 -15.63561 -15.23264 -14.77123 -14.69372 -14.35503 -14.17849 -13.96816 -13.84674 -13.74732 -13.49997 -13.09794 -12.77591 -12.60154 -12.32136 -12.12502 -12.00278 -11.76988 -11.61769 -11.49268 -11.37483 -11.23089 -10.98547 -10.88141 -10.53748 -10.34249 -9.81130 -9.79904 -9.67184 -9.45309 -9.34271 -9.28515 -8.97031 -8.82854 -8.51208 -8.24955 -7.81831 -6.17853 -4.16673 0.85005 0.91271 2.93665 3.19356 3.27941 3.28511 3.36624 3.51706 3.76295 4.18933 4.27060 4.35756 4.53361 4.65053 4.68127 4.75518 4.87445 4.90216 4.93452 5.01957 5.07991 5.14855 5.22877 5.42575 5.43565 5.48219 5.50391 5.53232 5.60451 5.70905 5.78263 5.83356 5.91366 5.97345 6.05735 6.28511 6.30976 6.49334 6.51999 6.59503 6.65009 6.66210 6.87667 6.93909 7.00474 7.26168 7.36794 7.49979 7.60299 7.70306 7.92728 8.31588 8.58509 8.78539 9.20411 9.40326 10.84148 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.003066 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.924933 B = 9129.984844 C =10150.481654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.053 0.947 4 C 0.144 3.856 5 N -0.640 5.640 6 C 0.702 3.298 7 O -0.598 6.598 8 N -0.720 5.720 9 C 0.162 3.838 10 C 0.041 3.959 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.079 3.921 14 N -0.861 5.861 15 Si 0.886 3.114 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.192 4.192 20 C -0.210 4.210 21 C 0.119 3.881 22 C 0.048 3.952 23 N -0.500 5.500 24 C 0.148 3.852 25 C -0.205 4.205 26 C 0.108 3.892 27 N -0.493 5.493 28 C 0.103 3.897 29 C -0.153 4.153 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.392 0.608 36 H 0.031 0.969 37 H 0.114 0.886 38 H 0.266 0.734 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.131 0.869 48 H 0.154 0.846 49 H 0.157 0.843 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.781 -5.975 11.999 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.071 0.929 4 C 0.020 3.980 5 N -0.380 5.380 6 C 0.404 3.596 7 O -0.477 6.477 8 N -0.374 5.374 9 C 0.039 3.961 10 C 0.040 3.960 11 C -0.541 4.541 12 H 0.081 0.919 13 C -0.127 4.127 14 N -0.497 5.497 15 Si 0.714 3.286 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.231 4.231 20 C -0.247 4.247 21 C -0.006 4.006 22 C -0.079 4.079 23 N -0.222 5.222 24 C 0.046 3.954 25 C -0.227 4.227 26 C -0.049 4.049 27 N -0.202 5.202 28 C -0.054 4.054 29 C -0.174 4.174 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.227 0.773 36 H 0.050 0.950 37 H 0.131 0.869 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.149 0.851 48 H 0.171 0.829 49 H 0.174 0.826 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.681 -5.523 11.845 20.413 hybrid contribution 1.279 0.843 0.423 1.589 sum -14.402 -4.679 12.268 19.489 Atomic orbital electron populations 1.21838 0.93228 1.02984 1.02271 1.22169 0.95887 0.96347 0.89396 0.92860 1.21456 0.79036 1.00633 0.96909 1.47386 1.06087 1.68127 1.16372 1.15912 0.81903 0.79359 0.82459 1.90864 1.74387 1.48558 1.33873 1.45390 1.04665 1.67290 1.20046 1.21135 0.86828 1.04302 0.83798 1.19137 0.92091 0.88269 0.96517 1.20407 1.23600 0.90377 1.19755 0.91917 1.24949 0.94453 0.97899 0.95356 1.69858 1.43360 1.10794 1.25638 0.86750 0.79025 0.79277 0.83594 1.20127 1.21213 1.20160 1.22933 1.00248 1.07608 0.92297 1.22874 1.02396 0.96800 1.02673 1.21716 0.98276 0.97787 0.82775 1.22567 0.85119 1.00599 0.99654 1.59551 1.07137 1.55308 1.00218 1.19088 0.94074 0.91072 0.91203 1.22760 1.02939 0.96991 1.00022 1.22611 0.92716 0.99800 0.89734 1.67721 1.16319 1.05024 1.31133 1.22727 0.95998 0.91253 0.95464 1.22092 0.98953 1.01579 0.94776 0.91393 0.92485 0.91312 0.91271 0.88313 0.77279 0.95036 0.86868 0.92373 0.91557 0.90136 0.90590 0.91404 0.89183 0.90588 0.93372 0.89207 0.85108 0.82912 0.82580 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.97 37.16 0.33 -1.00 16 2 C 0.07 0.77 2.19 -67.59 -0.15 0.63 16 3 H 0.05 0.67 7.20 -51.93 -0.37 0.30 16 4 C 0.14 1.86 5.88 -3.61 -0.02 1.84 16 5 N -0.64 -9.69 3.03 -177.87 -0.54 -10.23 16 6 C 0.70 13.98 8.31 -86.92 -0.72 13.26 16 7 O -0.60 -14.15 15.80 5.29 0.08 -14.07 16 8 N -0.72 -14.59 5.46 -65.23 -0.36 -14.95 16 9 C 0.16 3.82 5.30 -4.05 -0.02 3.80 16 10 C 0.04 0.95 1.71 -155.66 -0.27 0.69 16 11 C -0.50 -12.85 8.98 -34.44 -0.31 -13.16 16 12 H 0.06 1.59 7.90 -52.49 -0.41 1.17 16 13 C 0.08 2.04 5.07 -17.82 -0.09 1.95 16 14 N -0.86 -23.48 11.11 55.43 0.62 -22.87 16 15 Si 0.89 20.07 29.59 -169.99 -5.03 15.04 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 19 C -0.19 -4.23 9.88 -26.73 -0.26 -4.50 16 20 C -0.21 -4.26 9.94 -26.73 -0.27 -4.52 16 21 C 0.12 1.42 6.55 -3.38 -0.02 1.40 16 22 C 0.05 0.52 5.39 -3.70 -0.02 0.50 16 23 N -0.50 -5.18 4.47 -163.10 -0.73 -5.91 16 24 C 0.15 1.47 3.17 -83.61 -0.26 1.20 16 25 C -0.21 -2.04 8.42 -39.24 -0.33 -2.37 16 26 C 0.11 1.05 11.17 -17.60 -0.20 0.86 16 27 N -0.49 -5.19 10.36 -13.35 -0.14 -5.33 16 28 C 0.10 0.89 11.17 -17.60 -0.20 0.69 16 29 C -0.15 -1.33 10.06 -39.24 -0.39 -1.72 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.54 6.55 -51.93 -0.34 0.20 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.44 7.04 -51.93 -0.37 1.08 16 35 H 0.39 7.19 6.05 -40.82 -0.25 6.95 16 36 H 0.03 0.75 7.98 -51.93 -0.41 0.34 16 37 H 0.11 3.08 5.47 -51.93 -0.28 2.80 16 38 H 0.27 7.00 8.32 -40.82 -0.34 6.67 16 39 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.11 5.78 -51.93 -0.30 0.81 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.59 8.01 -51.93 -0.42 0.18 16 46 H 0.09 0.85 8.09 -51.93 -0.42 0.42 16 47 H 0.13 1.31 7.26 -52.49 -0.38 0.93 16 48 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 50 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -30.40 398.21 -11.03 -41.43 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -7.74 Total: 11.35 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.20 Total: -0.47 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -1.15 Total: -59.28 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.40 -11.03 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883620263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.029 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds