Wall clock time and date at job start Wed Apr 1 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47300 * 2 1 4 4 C 1.50700 * 109.47015 * 120.00419 * 2 1 3 5 5 O 1.21277 * 120.00800 * 93.81275 * 4 2 1 6 6 N 1.34781 * 119.99639 * 273.82018 * 4 2 1 7 7 C 1.43507 * 122.54697 * 4.89110 * 6 4 2 8 8 C 1.52192 * 113.97247 * 122.91549 * 7 6 4 9 9 C 1.51160 * 111.76939 * 82.86417 * 8 7 6 10 10 H 1.08995 * 110.22994 * 33.57230 * 9 8 7 11 11 C 1.53396 * 110.93177 * 156.63868 * 9 8 7 12 12 N 1.46616 * 108.10902 * 102.74734 * 11 9 8 13 13 C 1.36935 * 125.32682 * 178.61344 * 12 11 9 14 14 H 1.08003 * 119.99974 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00614 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99199 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00531 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46846 * 90.00039 * 17 15 13 19 19 H 1.48501 * 109.47388 * 210.00047 * 17 15 13 20 20 H 1.48502 * 109.47143 * 330.00423 * 17 15 13 21 21 C 1.46669 * 109.35461 * 358.63786 * 12 11 9 22 22 C 1.54046 * 106.93900 * 18.30351 * 21 12 11 23 23 H 1.08999 * 111.48128 * 91.53856 * 22 21 12 24 24 C 1.51851 * 109.44330 * 214.13560 * 22 21 12 25 25 C 1.49552 * 122.54511 * 185.18743 * 6 4 2 26 26 C 1.50700 * 109.47158 * 240.00026 * 2 1 3 27 27 C 1.38594 * 120.79942 * 120.00247 * 26 2 1 28 28 N 1.32338 * 119.10723 * 179.97438 * 27 26 2 29 29 C 1.31802 * 120.81409 * 0.02562 * 28 27 26 30 30 N 1.31797 * 121.75278 * 359.97438 * 29 28 27 31 31 C 1.32329 * 120.82409 * 359.97438 * 30 29 28 32 32 H 1.09002 * 109.47292 * 183.41047 * 1 2 3 33 33 H 1.08990 * 109.47225 * 303.41492 * 1 2 3 34 34 H 1.09003 * 109.46580 * 63.41641 * 1 2 3 35 35 H 1.09007 * 108.52781 * 244.19541 * 7 6 4 36 36 H 1.09003 * 108.52606 * 1.71582 * 7 6 4 37 37 H 1.09000 * 109.13240 * 322.23100 * 8 7 6 38 38 H 1.08994 * 108.91314 * 203.35349 * 8 7 6 39 39 H 1.09009 * 109.74554 * 222.41011 * 11 9 8 40 40 H 1.08997 * 109.74769 * 343.07529 * 11 9 8 41 41 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 42 42 H 1.09007 * 109.96232 * 258.93512 * 21 12 11 43 43 H 1.08994 * 109.96883 * 137.67872 * 21 12 11 44 44 H 1.08999 * 109.00994 * 54.29907 * 24 22 21 45 45 H 1.08995 * 108.94647 * 295.45995 * 24 22 21 46 46 H 1.08999 * 110.26736 * 9.13245 * 25 6 4 47 47 H 1.08998 * 110.27073 * 131.09422 * 25 6 4 48 48 H 1.07999 * 120.44839 * 359.70356 * 27 26 2 49 49 H 1.07996 * 119.11956 * 180.02562 * 29 28 27 50 50 H 1.07991 * 120.45223 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3003 -1.8923 1.1815 6 7 2.1836 -0.0326 2.3854 7 6 1.7874 1.3388 2.5333 8 6 0.7882 1.5761 3.6564 9 6 1.4723 1.7007 4.9985 10 1 2.4467 2.1751 4.8823 11 6 0.6002 2.4843 5.9876 12 7 -0.0258 1.5249 6.9026 13 6 -0.8550 1.8483 7.9433 14 1 -1.0942 2.8827 8.1418 15 6 -1.3890 0.8468 8.7426 16 7 -1.0978 -0.4137 8.5003 17 14 -2.5206 1.2880 10.1617 18 1 -3.9265 1.3135 9.6841 19 1 -2.3819 0.2752 11.2388 20 1 -2.1531 2.6263 10.6903 21 6 0.3754 0.1644 6.5294 22 6 1.6313 0.2930 5.6467 23 1 2.5436 0.2455 6.2413 24 6 1.6238 -0.8015 4.5942 25 6 2.7830 -0.6504 3.6084 26 6 2.0324 -0.7104 -1.2305 27 6 2.8301 -0.0529 -2.1535 28 7 3.2531 -0.7092 -3.2220 29 6 2.9241 -1.9710 -3.4134 30 7 2.1675 -2.6281 -2.5573 31 6 1.7085 -2.0374 -1.4658 32 1 -0.3634 -1.0259 0.0611 33 1 -0.3633 0.5659 0.8577 34 1 -0.3632 0.4599 -0.9191 35 1 2.6778 1.9378 2.7251 36 1 1.3441 1.6743 1.5957 37 1 0.0862 0.7430 3.6920 38 1 0.2383 2.4947 3.4518 39 1 1.2194 3.1815 6.5524 40 1 -0.1701 3.0324 5.4452 41 1 -1.4706 -1.1136 9.0590 42 1 -0.4251 -0.3192 5.9694 43 1 0.6066 -0.4141 7.4237 44 1 0.6831 -0.7596 4.0452 45 1 1.7028 -1.7692 5.0895 46 1 3.2054 -1.6265 3.3700 47 1 3.5515 0.0019 4.0230 48 1 3.0994 0.9824 -2.0051 49 1 3.2848 -2.4803 -4.2948 50 1 1.0893 -2.5816 -0.7681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946734822.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:50 Heat of formation + Delta-G solvation = 45.211888 kcal Electronic energy + Delta-G solvation = -30930.173512 eV Core-core repulsion = 26958.317407 eV Total energy + Delta-G solvation = -3971.856105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53056 -40.42297 -38.71334 -36.03467 -35.14031 -33.93582 -33.17522 -32.32654 -30.79199 -30.36099 -27.69849 -27.41685 -25.62009 -24.78542 -24.46553 -23.39384 -23.08243 -21.98914 -20.15501 -19.29852 -18.36736 -18.18747 -17.86966 -17.02725 -16.88791 -16.38581 -15.61365 -15.21288 -14.97762 -14.71588 -14.40807 -14.20130 -14.00617 -13.88245 -13.78969 -13.66040 -13.22785 -13.01592 -12.80627 -12.61636 -12.48589 -12.30604 -12.00344 -11.74361 -11.50832 -11.24664 -11.17404 -11.06341 -11.05856 -10.92094 -10.80812 -10.72413 -10.15759 -10.05614 -9.92525 -9.78615 -9.68994 -9.62612 -9.48656 -9.43052 -8.72231 -8.58987 -6.83572 -5.69256 -3.08197 0.57546 0.84642 2.41471 2.81093 3.37667 3.42804 3.44838 3.53787 3.85196 3.95910 4.16399 4.24497 4.32884 4.47191 4.53553 4.68157 4.80120 4.95418 4.99569 5.03021 5.16058 5.24616 5.27909 5.33889 5.36597 5.37460 5.46757 5.53482 5.60961 5.61999 5.70766 5.78510 5.83069 5.94218 6.02368 6.11340 6.12952 6.28861 6.32741 6.39457 6.53963 6.59687 6.64758 6.68008 6.75005 6.99327 7.38103 7.53262 7.63541 7.80611 7.84684 7.97994 8.33227 9.21914 9.82875 10.46527 11.36502 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.002279 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.969889 B =12284.879281 C =12435.765084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 H 0.106 0.894 4 C 0.527 3.473 5 O -0.538 6.538 6 N -0.604 5.604 7 C 0.104 3.896 8 C -0.127 4.127 9 C -0.092 4.092 10 H 0.066 0.934 11 C 0.143 3.857 12 N -0.602 5.602 13 C -0.225 4.225 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.921 5.921 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.170 3.830 22 C -0.109 4.109 23 H 0.067 0.933 24 C -0.125 4.125 25 C 0.115 3.885 26 C -0.179 4.179 27 C 0.153 3.847 28 N -0.524 5.524 29 C 0.288 3.712 30 N -0.521 5.521 31 C 0.186 3.814 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.252 0.748 42 H 0.014 0.986 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.166 0.834 49 H 0.195 0.805 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.782 2.581 -20.145 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 H 0.124 0.876 4 C 0.314 3.686 5 O -0.415 6.415 6 N -0.337 5.337 7 C -0.020 4.020 8 C -0.165 4.165 9 C -0.111 4.111 10 H 0.084 0.916 11 C 0.017 3.983 12 N -0.328 5.328 13 C -0.354 4.354 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.045 3.955 22 C -0.129 4.129 23 H 0.085 0.915 24 C -0.163 4.163 25 C -0.006 4.006 26 C -0.183 4.183 27 C -0.013 4.013 28 N -0.237 5.237 29 C 0.001 3.999 30 N -0.235 5.235 31 C 0.021 3.979 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.184 0.816 49 H 0.211 0.789 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.138 1.361 -20.849 22.423 hybrid contribution -0.918 0.791 1.619 2.023 sum 7.220 2.152 -19.230 20.653 Atomic orbital electron populations 1.21816 0.90914 1.03763 1.03529 1.20138 0.98463 0.99998 0.89854 0.87583 1.20195 0.77636 0.87072 0.83654 1.90701 1.50991 1.15199 1.84575 1.48006 1.60565 1.13423 1.11680 1.20971 0.99009 0.82161 0.99870 1.21570 0.98214 1.03027 0.93732 1.21788 0.98140 0.97022 0.94142 0.91583 1.21107 0.93750 0.92571 0.90892 1.44206 1.54879 1.01312 1.32436 1.19056 1.19624 0.92758 1.03922 0.90539 1.24801 1.00764 0.95333 0.99723 1.69897 1.47963 0.98407 1.40701 0.86101 0.80506 0.77230 0.81827 1.21650 1.21664 1.20707 1.21414 0.89806 0.87358 0.96925 1.22448 1.01329 0.92645 0.96458 0.91481 1.21845 0.98359 0.99574 0.96538 1.22328 0.95971 0.99074 0.83246 1.21197 1.01719 0.97300 0.98123 1.23118 0.89970 1.00036 0.88169 1.68444 1.23131 1.10539 1.21597 1.25008 0.90162 0.87525 0.97235 1.68509 1.11581 1.39385 1.03998 1.23205 0.92293 0.90825 0.91598 0.91409 0.90659 0.91031 0.91859 0.90711 0.90400 0.90905 0.96277 0.96202 0.93771 0.96807 0.89333 0.90778 0.91447 0.89553 0.90344 0.81645 0.78863 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.81 37.16 0.33 -0.73 16 2 C -0.06 -0.51 2.08 -92.92 -0.19 -0.70 16 3 H 0.11 0.61 6.48 -51.93 -0.34 0.28 16 4 C 0.53 6.13 6.83 -10.98 -0.08 6.06 16 5 O -0.54 -8.09 14.33 5.56 0.08 -8.01 16 6 N -0.60 -6.73 2.61 -174.01 -0.45 -7.18 16 7 C 0.10 0.97 5.47 -6.04 -0.03 0.94 16 8 C -0.13 -1.57 4.79 -28.07 -0.13 -1.70 16 9 C -0.09 -1.38 2.79 -89.86 -0.25 -1.63 16 10 H 0.07 0.87 7.67 -51.93 -0.40 0.47 16 11 C 0.14 2.77 6.82 -3.77 -0.03 2.75 16 12 N -0.60 -14.86 3.38 -172.12 -0.58 -15.44 16 13 C -0.23 -6.15 10.25 -15.06 -0.15 -6.31 16 14 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 15 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 16 N -0.92 -26.57 10.16 55.49 0.56 -26.00 16 17 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.17 3.93 5.13 -3.40 -0.02 3.91 16 22 C -0.11 -1.86 2.94 -89.17 -0.26 -2.12 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 24 C -0.12 -1.84 4.50 -27.36 -0.12 -1.96 16 25 C 0.11 1.41 6.15 -2.38 -0.01 1.40 16 26 C -0.18 -1.69 4.66 -104.36 -0.49 -2.18 16 27 C 0.15 1.34 10.96 -17.20 -0.19 1.15 16 28 N -0.52 -5.35 10.44 -14.58 -0.15 -5.50 16 29 C 0.29 2.86 12.29 -92.15 -1.13 1.73 16 30 N -0.52 -6.03 10.44 -14.58 -0.15 -6.18 16 31 C 0.19 2.07 9.26 -17.20 -0.16 1.91 16 32 H 0.07 0.56 7.61 -51.93 -0.40 0.17 16 33 H 0.07 0.55 7.40 -51.93 -0.38 0.16 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 36 H 0.07 0.52 4.97 -51.93 -0.26 0.26 16 37 H 0.08 1.14 5.87 -51.93 -0.30 0.84 16 38 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 39 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 40 H 0.02 0.38 7.40 -51.93 -0.38 0.00 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.01 0.35 7.72 -51.93 -0.40 -0.05 16 43 H 0.09 2.36 6.19 -51.93 -0.32 2.04 16 44 H 0.07 1.18 5.47 -51.93 -0.28 0.89 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.12 7.35 -51.93 -0.38 0.74 16 47 H 0.08 0.87 7.82 -51.93 -0.41 0.47 16 48 H 0.17 0.93 8.01 -52.49 -0.42 0.51 16 49 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 50 H 0.17 1.89 7.06 -52.49 -0.37 1.52 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -33.04 380.39 -10.50 -43.54 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.50 Total: 0.11 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.02 Total: 2.13 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.78 Total: -60.30 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.08 Total: -8.01 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.04 -10.50 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946734822.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.756 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds