Wall clock time and date at job start Wed Apr 1 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47300 * 2 1 4 4 C 1.50700 * 109.47015 * 120.00419 * 2 1 3 5 5 O 1.21277 * 120.00800 * 93.81275 * 4 2 1 6 6 N 1.34781 * 119.99639 * 273.82018 * 4 2 1 7 7 C 1.43507 * 122.54697 * 4.89110 * 6 4 2 8 8 C 1.52192 * 113.97247 * 122.91549 * 7 6 4 9 9 C 1.51160 * 111.76939 * 82.86417 * 8 7 6 10 10 H 1.08995 * 110.22994 * 33.57230 * 9 8 7 11 11 C 1.53396 * 110.93177 * 156.63868 * 9 8 7 12 12 N 1.46616 * 108.10902 * 102.74734 * 11 9 8 13 13 C 1.36935 * 125.32682 * 178.61344 * 12 11 9 14 14 H 1.08003 * 119.99974 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00614 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99199 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00531 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46846 * 90.00039 * 17 15 13 19 19 H 1.48501 * 109.47388 * 210.00047 * 17 15 13 20 20 H 1.48502 * 109.47143 * 330.00423 * 17 15 13 21 21 C 1.46669 * 109.35461 * 358.63786 * 12 11 9 22 22 C 1.54046 * 106.93900 * 18.30351 * 21 12 11 23 23 H 1.08999 * 111.48128 * 91.53856 * 22 21 12 24 24 C 1.51851 * 109.44330 * 214.13560 * 22 21 12 25 25 C 1.49552 * 122.54511 * 185.18743 * 6 4 2 26 26 C 1.50700 * 109.47158 * 240.00026 * 2 1 3 27 27 C 1.38594 * 120.79942 * 120.00247 * 26 2 1 28 28 N 1.32338 * 119.10723 * 179.97438 * 27 26 2 29 29 C 1.31802 * 120.81409 * 0.02562 * 28 27 26 30 30 N 1.31797 * 121.75278 * 359.97438 * 29 28 27 31 31 C 1.32329 * 120.82409 * 359.97438 * 30 29 28 32 32 H 1.09002 * 109.47292 * 183.41047 * 1 2 3 33 33 H 1.08990 * 109.47225 * 303.41492 * 1 2 3 34 34 H 1.09003 * 109.46580 * 63.41641 * 1 2 3 35 35 H 1.09007 * 108.52781 * 244.19541 * 7 6 4 36 36 H 1.09003 * 108.52606 * 1.71582 * 7 6 4 37 37 H 1.09000 * 109.13240 * 322.23100 * 8 7 6 38 38 H 1.08994 * 108.91314 * 203.35349 * 8 7 6 39 39 H 1.09009 * 109.74554 * 222.41011 * 11 9 8 40 40 H 1.08997 * 109.74769 * 343.07529 * 11 9 8 41 41 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 42 42 H 1.09007 * 109.96232 * 258.93512 * 21 12 11 43 43 H 1.08994 * 109.96883 * 137.67872 * 21 12 11 44 44 H 1.08999 * 109.00994 * 54.29907 * 24 22 21 45 45 H 1.08995 * 108.94647 * 295.45995 * 24 22 21 46 46 H 1.08999 * 110.26736 * 9.13245 * 25 6 4 47 47 H 1.08998 * 110.27073 * 131.09422 * 25 6 4 48 48 H 1.07999 * 120.44839 * 359.70356 * 27 26 2 49 49 H 1.07996 * 119.11956 * 180.02562 * 29 28 27 50 50 H 1.07991 * 120.45223 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3003 -1.8923 1.1815 6 7 2.1836 -0.0326 2.3854 7 6 1.7874 1.3388 2.5333 8 6 0.7882 1.5761 3.6564 9 6 1.4723 1.7007 4.9985 10 1 2.4467 2.1751 4.8823 11 6 0.6002 2.4843 5.9876 12 7 -0.0258 1.5249 6.9026 13 6 -0.8550 1.8483 7.9433 14 1 -1.0942 2.8827 8.1418 15 6 -1.3890 0.8468 8.7426 16 7 -1.0978 -0.4137 8.5003 17 14 -2.5206 1.2880 10.1617 18 1 -3.9265 1.3135 9.6841 19 1 -2.3819 0.2752 11.2388 20 1 -2.1531 2.6263 10.6903 21 6 0.3754 0.1644 6.5294 22 6 1.6313 0.2930 5.6467 23 1 2.5436 0.2455 6.2413 24 6 1.6238 -0.8015 4.5942 25 6 2.7830 -0.6504 3.6084 26 6 2.0324 -0.7104 -1.2305 27 6 2.8301 -0.0529 -2.1535 28 7 3.2531 -0.7092 -3.2220 29 6 2.9241 -1.9710 -3.4134 30 7 2.1675 -2.6281 -2.5573 31 6 1.7085 -2.0374 -1.4658 32 1 -0.3634 -1.0259 0.0611 33 1 -0.3633 0.5659 0.8577 34 1 -0.3632 0.4599 -0.9191 35 1 2.6778 1.9378 2.7251 36 1 1.3441 1.6743 1.5957 37 1 0.0862 0.7430 3.6920 38 1 0.2383 2.4947 3.4518 39 1 1.2194 3.1815 6.5524 40 1 -0.1701 3.0324 5.4452 41 1 -1.4706 -1.1136 9.0590 42 1 -0.4251 -0.3192 5.9694 43 1 0.6066 -0.4141 7.4237 44 1 0.6831 -0.7596 4.0452 45 1 1.7028 -1.7692 5.0895 46 1 3.2054 -1.6265 3.3700 47 1 3.5515 0.0019 4.0230 48 1 3.0994 0.9824 -2.0051 49 1 3.2848 -2.4803 -4.2948 50 1 1.0893 -2.5816 -0.7681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946734822.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:48 Heat of formation + Delta-G solvation = 25.502741 kcal Electronic energy + Delta-G solvation = -30931.028165 eV Core-core repulsion = 26958.317407 eV Total energy + Delta-G solvation = -3972.710758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.28241 -41.38433 -39.94030 -37.32002 -35.89919 -34.84221 -34.65871 -33.49845 -32.38950 -31.15848 -29.10085 -28.83176 -26.52136 -25.92563 -25.46220 -24.53372 -24.19571 -22.90553 -21.92637 -20.17533 -19.62937 -19.01279 -18.88342 -18.54054 -17.76426 -17.23664 -16.92167 -16.59599 -16.05039 -15.80393 -15.61935 -15.31073 -15.08949 -14.86484 -14.62180 -14.51371 -14.47375 -14.30536 -13.98124 -13.65629 -13.51481 -13.28232 -13.18748 -13.03438 -12.81579 -12.68318 -12.64880 -12.43836 -12.34298 -12.05181 -11.81621 -11.81504 -11.78150 -11.71416 -11.37866 -11.05790 -10.97057 -10.81530 -10.69882 -10.37741 -10.18419 -9.62282 -8.84758 -7.79135 -5.20143 -0.12704 0.12111 1.44901 1.46443 1.55295 1.55379 1.96982 2.49495 2.81195 3.22267 3.28216 3.32441 3.48922 3.53528 3.67451 3.72569 3.74162 3.85097 3.90987 4.02395 4.11234 4.16988 4.23592 4.29438 4.39742 4.49324 4.55154 4.69254 4.70477 4.72816 4.76673 4.79101 4.82112 4.94953 5.01046 5.02090 5.10324 5.15578 5.17179 5.22802 5.29309 5.32227 5.43044 5.48205 5.54221 5.66397 5.78848 5.87005 5.96836 6.30295 6.53893 7.08709 7.12294 7.13458 7.84268 8.44969 9.24497 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.002279 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.969889 B =12284.879281 C =12435.765084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 H 0.146 0.854 4 C 0.522 3.478 5 O -0.580 6.580 6 N -0.603 5.603 7 C 0.104 3.896 8 C -0.122 4.122 9 C -0.078 4.078 10 H 0.103 0.897 11 C 0.134 3.866 12 N -0.626 5.626 13 C -0.237 4.237 14 H 0.082 0.918 15 C -0.071 4.071 16 N -0.951 5.951 17 Si 0.977 3.023 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.267 1.267 21 C 0.179 3.821 22 C -0.096 4.096 23 H 0.071 0.929 24 C -0.113 4.113 25 C 0.123 3.877 26 C -0.179 4.179 27 C 0.157 3.843 28 N -0.537 5.537 29 C 0.281 3.719 30 N -0.548 5.548 31 C 0.167 3.833 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.022 0.978 40 H 0.027 0.973 41 H 0.244 0.756 42 H -0.023 1.023 43 H 0.044 0.956 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.205 0.795 49 H 0.219 0.781 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.148 5.865 -22.155 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 H 0.163 0.837 4 C 0.311 3.689 5 O -0.459 6.459 6 N -0.334 5.334 7 C -0.019 4.019 8 C -0.160 4.160 9 C -0.097 4.097 10 H 0.121 0.879 11 C 0.009 3.991 12 N -0.352 5.352 13 C -0.366 4.366 14 H 0.100 0.900 15 C -0.263 4.263 16 N -0.601 5.601 17 Si 0.806 3.194 18 H -0.215 1.215 19 H -0.223 1.223 20 H -0.192 1.192 21 C 0.054 3.946 22 C -0.116 4.116 23 H 0.089 0.911 24 C -0.152 4.152 25 C 0.001 3.999 26 C -0.184 4.184 27 C -0.008 4.008 28 N -0.250 5.250 29 C -0.006 4.006 30 N -0.262 5.262 31 C 0.002 3.998 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.040 0.960 40 H 0.045 0.955 41 H 0.054 0.946 42 H -0.005 1.005 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.221 0.779 49 H 0.235 0.765 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.509 4.694 -22.877 25.215 hybrid contribution -1.379 -0.228 2.272 2.667 sum 8.130 4.465 -20.605 22.597 Atomic orbital electron populations 1.21827 0.90377 1.02953 1.04720 1.20183 0.98671 1.01178 0.87270 0.83661 1.20850 0.76739 0.86686 0.84614 1.90695 1.52685 1.17233 1.85311 1.48051 1.60128 1.14185 1.11044 1.21092 0.99481 0.81191 1.00160 1.21515 0.98447 1.02743 0.93333 1.21795 0.99290 0.94406 0.94193 0.87875 1.21399 0.94317 0.92320 0.91054 1.44553 1.54839 1.02929 1.32857 1.19467 1.19598 0.93009 1.04525 0.90008 1.25656 1.02797 0.95367 1.02515 1.70179 1.49139 0.99193 1.41584 0.85087 0.78447 0.77274 0.78610 1.21468 1.22271 1.19158 1.21113 0.91430 0.86381 0.95675 1.22249 0.98011 0.95170 0.96132 0.91081 1.21699 0.99197 0.97897 0.96364 1.22154 0.94981 0.99581 0.83162 1.21285 1.01771 0.96542 0.98788 1.23737 0.88598 1.01403 0.87102 1.68530 1.23523 1.10600 1.22343 1.25516 0.89634 0.87824 0.97599 1.68488 1.12671 1.40343 1.04700 1.23183 0.92878 0.92033 0.91658 0.93311 0.90193 0.89073 0.89127 0.87255 0.93364 0.89183 0.95952 0.95495 0.94644 1.00465 0.93777 0.92175 0.93178 0.90564 0.88015 0.77875 0.76522 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.81 71.98 0.63 -1.09 16 2 C -0.05 -0.66 2.08 -12.29 -0.03 -0.69 16 3 H 0.15 0.77 6.48 -2.39 -0.02 0.75 16 4 C 0.52 11.06 6.83 87.66 0.60 11.66 16 5 O -0.58 -17.36 14.33 -3.02 -0.04 -17.40 16 6 N -0.60 -11.62 2.61 -822.85 -2.15 -13.76 16 7 C 0.10 1.42 5.47 86.67 0.47 1.90 16 8 C -0.12 -2.61 4.79 29.73 0.14 -2.47 16 9 C -0.08 -2.13 2.79 -10.30 -0.03 -2.16 16 10 H 0.10 2.15 7.67 -2.39 -0.02 2.14 16 11 C 0.13 5.00 6.82 86.49 0.59 5.59 16 12 N -0.63 -31.45 3.38 -698.46 -2.36 -33.81 16 13 C -0.24 -13.17 10.25 84.03 0.86 -12.30 16 14 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 15 C -0.07 -4.05 5.48 84.86 0.47 -3.59 16 16 N -0.95 -57.64 10.16 21.65 0.22 -57.42 16 17 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 C 0.18 8.70 5.13 86.70 0.44 9.15 16 22 C -0.10 -3.25 2.94 -9.86 -0.03 -3.28 16 23 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 24 C -0.11 -3.37 4.50 30.19 0.14 -3.23 16 25 C 0.12 2.80 6.15 85.76 0.53 3.33 16 26 C -0.18 -2.98 4.66 -19.69 -0.09 -3.07 16 27 C 0.16 2.22 10.96 84.70 0.93 3.15 16 28 N -0.54 -9.69 10.44 -200.04 -2.09 -11.77 16 29 C 0.28 5.25 12.29 180.88 2.22 7.47 16 30 N -0.55 -12.62 10.44 -200.05 -2.09 -14.70 16 31 C 0.17 3.70 9.26 84.71 0.78 4.49 16 32 H 0.05 0.79 7.61 -2.39 -0.02 0.77 16 33 H 0.08 0.92 7.40 -2.39 -0.02 0.90 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.90 7.68 -2.38 -0.02 0.88 16 36 H 0.11 0.81 4.97 -2.39 -0.01 0.80 16 37 H 0.05 1.35 5.87 -2.39 -0.01 1.34 16 38 H 0.09 1.67 7.53 -2.39 -0.02 1.66 16 39 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.03 0.98 7.40 -2.39 -0.02 0.96 16 41 H 0.24 14.46 8.31 -92.70 -0.77 13.69 16 42 H -0.02 -1.23 7.72 -2.38 -0.02 -1.25 16 43 H 0.04 2.52 6.19 -2.39 -0.01 2.50 16 44 H 0.06 1.97 5.47 -2.39 -0.01 1.96 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.08 1.94 7.35 -2.39 -0.02 1.92 16 47 H 0.10 1.89 7.82 -2.39 -0.02 1.87 16 48 H 0.20 1.17 8.01 -2.91 -0.02 1.14 16 49 H 0.22 2.60 8.06 -2.91 -0.02 2.57 16 50 H 0.16 3.72 7.06 -2.92 -0.02 3.70 16 Total: -1.00 -78.11 380.39 3.11 -75.00 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.95 Total: 11.18 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 8.63 Total: 14.84 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -8.46 Total: -131.47 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.04 Total: -17.40 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -78.11 3.11 -75.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946734822.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.508 kcal (2) G-P(sol) polarization free energy of solvation -78.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds