Wall clock time and date at job start Wed Apr 1 2020 03:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.46948 * 2 1 4 4 C 1.34771 * 120.00666 * 251.89594 * 3 2 1 5 5 O 1.21592 * 120.00590 * 184.57973 * 4 3 2 6 6 C 1.47549 * 119.99718 * 4.57282 * 4 3 2 7 7 C 1.40345 * 120.47690 * 206.27701 * 6 4 3 8 8 C 1.36858 * 118.49605 * 180.02562 * 7 6 4 9 9 C 1.39398 * 119.37264 * 359.97438 * 8 7 6 10 10 N 1.38465 * 119.53407 * 179.97438 * 9 8 7 11 11 C 1.48527 * 110.99987 * 62.60720 * 10 9 8 12 12 C 1.54935 * 103.22640 * 159.71937 * 11 10 9 13 13 C 1.54594 * 102.92075 * 322.58312 * 12 11 10 14 14 C 1.47904 * 110.99655 * 180.02562 * 10 9 8 15 15 N 1.32599 * 120.92460 * 0.02562 * 9 8 7 16 16 C 1.31673 * 121.63801 * 359.69753 * 15 9 8 17 17 C 1.46507 * 119.99515 * 71.89551 * 3 2 1 18 18 C 1.53495 * 114.20389 * 120.00082 * 17 3 2 19 19 N 1.47065 * 87.98643 * 87.51760 * 18 17 3 20 20 C 1.36933 * 136.05489 * 207.08030 * 19 18 17 21 21 H 1.08001 * 120.00308 * 355.53556 * 20 19 18 22 22 C 1.38818 * 119.99641 * 175.53492 * 20 19 18 23 23 N 1.31627 * 119.99742 * 184.02556 * 22 20 19 24 24 Si 1.86797 * 120.00404 * 4.02718 * 22 20 19 25 25 H 1.48490 * 109.47261 * 174.69263 * 24 22 20 26 26 H 1.48502 * 109.46971 * 294.69576 * 24 22 20 27 27 H 1.48506 * 109.46749 * 54.69215 * 24 22 20 28 28 C 1.47063 * 87.88639 * 27.34036 * 19 18 17 29 29 H 1.09004 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47185 * 299.99214 * 1 2 3 31 31 H 1.08998 * 109.47323 * 59.99537 * 1 2 3 32 32 H 1.09003 * 109.47185 * 240.00786 * 2 1 3 33 33 H 1.08998 * 109.47323 * 120.00463 * 2 1 3 34 34 H 1.08007 * 120.75213 * 359.97438 * 7 6 4 35 35 H 1.07998 * 120.31458 * 179.97438 * 8 7 6 36 36 H 1.09002 * 110.66771 * 278.15432 * 11 10 9 37 37 H 1.09002 * 110.67210 * 41.28371 * 11 10 9 38 38 H 1.09000 * 110.72469 * 204.22332 * 12 11 10 39 39 H 1.09001 * 110.87614 * 81.01714 * 12 11 10 40 40 H 1.09002 * 110.30778 * 263.03941 * 13 12 11 41 41 H 1.09000 * 110.30735 * 140.87437 * 13 12 11 42 42 H 1.08998 * 109.91842 * 333.50794 * 14 10 9 43 43 H 1.09002 * 109.91706 * 94.80270 * 14 10 9 44 44 H 1.08001 * 119.74503 * 180.29390 * 16 15 9 45 45 H 1.08994 * 113.28538 * 346.92852 * 17 3 2 46 46 H 1.08995 * 113.47046 * 332.73624 * 18 17 3 47 47 H 1.09002 * 113.46367 * 202.29528 * 18 17 3 48 48 H 0.97003 * 119.99741 * 5.00759 * 23 22 20 49 49 H 1.09009 * 113.46739 * 87.43658 * 28 19 18 50 50 H 1.08999 * 113.46937 * 217.87868 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.5848 1.8958 -1.1093 5 8 3.0649 3.0127 -1.0847 6 6 2.6226 1.1038 -2.3536 7 6 3.6235 1.3298 -3.3111 8 6 3.6198 0.5721 -4.4508 9 6 2.6307 -0.3943 -4.6262 10 7 2.6235 -1.1624 -5.7783 11 6 3.8566 -1.9842 -5.8779 12 6 3.4552 -3.1074 -6.8666 13 6 1.9856 -3.3964 -6.4833 14 6 1.4983 -2.1223 -5.7682 15 7 1.6961 -0.5878 -3.7056 16 6 1.6667 0.1155 -2.5929 17 6 1.8906 2.2032 1.2060 18 6 3.2269 2.7075 1.7682 19 7 3.1083 3.8659 0.8699 20 6 3.9752 4.7267 0.2513 21 1 5.0349 4.6603 0.4486 22 6 3.4918 5.6845 -0.6295 23 7 4.3305 6.4594 -1.2843 24 14 1.6512 5.8740 -0.8855 25 1 1.3915 7.0396 -1.7680 26 1 1.1102 4.6441 -1.5179 27 1 0.9886 6.0887 0.4261 28 6 1.6488 3.6970 0.9337 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.3791 2.0850 -3.1524 35 1 4.3760 0.7216 -5.2072 36 1 4.6806 -1.3944 -6.2796 37 1 4.1196 -2.4027 -4.9064 38 1 4.0739 -3.9922 -6.7171 39 1 3.5239 -2.7603 -7.8976 40 1 1.9314 -4.2524 -5.8106 41 1 1.3902 -3.5790 -7.3779 42 1 1.2194 -2.3568 -4.7409 43 1 0.6456 -1.7005 -6.3002 44 1 0.8942 -0.0708 -1.8615 45 1 1.2258 1.7709 1.9538 46 1 4.0701 2.0589 1.5310 47 1 3.1814 2.9712 2.8249 48 1 5.2864 6.3136 -1.2074 49 1 1.1873 4.2216 1.7704 50 1 1.1475 3.8913 -0.0145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000956961291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:15 Heat of formation + Delta-G solvation = 137.337366 kcal Electronic energy + Delta-G solvation = -31814.378383 eV Core-core repulsion = 27846.517139 eV Total energy + Delta-G solvation = -3967.861244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.32411 -41.36990 -39.51816 -38.11445 -36.92399 -34.38033 -33.85553 -33.52836 -31.37682 -30.50503 -29.91725 -29.28293 -26.94044 -25.68352 -24.94123 -24.29969 -23.88961 -22.47120 -21.87208 -21.48801 -20.04374 -19.25758 -18.80944 -18.43543 -17.83312 -17.17534 -16.77230 -16.38191 -16.31949 -16.16866 -15.71536 -15.68040 -15.39491 -15.12844 -14.79048 -14.69208 -14.42431 -14.17756 -13.98593 -13.57203 -13.55031 -13.18494 -13.11957 -13.03769 -13.00422 -12.59915 -12.52447 -12.39756 -12.25914 -12.11890 -12.08923 -11.99119 -11.45794 -11.18638 -11.12884 -11.03942 -10.95019 -10.84613 -10.52808 -10.18811 -9.45002 -9.21727 -8.67695 -8.39611 -5.12843 -0.36186 0.12247 1.32461 1.50029 1.63829 1.98319 2.03784 2.51427 2.67315 2.74294 3.19195 3.24790 3.45185 3.55279 3.60920 3.68213 3.74474 3.84189 3.95283 4.02110 4.04772 4.15393 4.31852 4.33622 4.38542 4.48736 4.50665 4.53085 4.56934 4.66376 4.69032 4.73485 4.78226 4.82746 4.89717 4.90832 4.96936 4.97175 5.00855 5.10783 5.11867 5.13911 5.26455 5.30590 5.38710 5.42789 5.58008 5.91039 5.99861 6.15569 6.58485 6.71607 6.91244 7.56912 7.64711 8.52611 9.17273 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003532 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.177889 B = 7925.373284 C = 8896.363329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 N -0.594 5.594 4 C 0.508 3.492 5 O -0.474 6.474 6 C -0.218 4.218 7 C -0.020 4.020 8 C -0.184 4.184 9 C 0.315 3.685 10 N -0.471 5.471 11 C 0.038 3.962 12 C -0.117 4.117 13 C -0.127 4.127 14 C 0.031 3.969 15 N -0.524 5.524 16 C 0.137 3.863 17 C 0.135 3.865 18 C 0.103 3.897 19 N -0.631 5.631 20 C -0.213 4.213 21 H 0.030 0.970 22 C -0.080 4.080 23 N -0.997 5.997 24 Si 1.127 2.873 25 H -0.326 1.326 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.076 3.924 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.208 0.792 45 H 0.155 0.845 46 H 0.027 0.973 47 H 0.070 0.930 48 H 0.235 0.765 49 H 0.066 0.934 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 -28.365 -4.143 30.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.043 4.043 3 N -0.329 5.329 4 C 0.294 3.706 5 O -0.345 6.345 6 C -0.225 4.225 7 C -0.046 4.046 8 C -0.206 4.206 9 C 0.083 3.917 10 N -0.189 5.189 11 C -0.086 4.086 12 C -0.155 4.155 13 C -0.165 4.165 14 C -0.096 4.096 15 N -0.238 5.238 16 C -0.020 4.020 17 C 0.030 3.970 18 C -0.024 4.024 19 N -0.359 5.359 20 C -0.341 4.341 21 H 0.048 0.952 22 C -0.269 4.269 23 N -0.647 5.647 24 Si 0.960 3.040 25 H -0.256 1.256 26 H -0.219 1.219 27 H -0.196 1.196 28 C -0.050 4.050 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.172 0.828 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.224 0.776 45 H 0.172 0.828 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.083 0.917 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.698 -27.047 -5.615 29.623 hybrid contribution 2.694 0.330 1.271 2.997 sum -8.004 -26.716 -4.344 28.226 Atomic orbital electron populations 1.22306 0.93908 1.04314 1.02859 1.22457 0.95871 0.80920 1.05024 1.47514 1.60855 1.13983 1.10561 1.18880 0.79928 0.87677 0.84133 1.91490 1.41720 1.18457 1.82823 1.21126 1.01079 1.02239 0.98054 1.21276 0.95926 0.95327 0.92073 1.21332 1.02232 0.97995 0.99031 1.20310 0.89942 0.93286 0.88170 1.61789 1.06862 1.22257 1.28019 1.23477 0.90717 0.94334 1.00091 1.22530 0.96147 0.97604 0.99200 1.22456 0.96529 0.96281 1.01215 1.22984 0.92837 0.91499 1.02268 1.67771 1.25784 1.28191 1.02094 1.24181 0.96390 0.88068 0.93399 1.22502 0.97352 0.90004 0.87156 1.23027 0.96677 0.88016 0.94632 1.45686 1.01880 1.34839 1.53448 1.19483 0.87619 1.09078 1.17884 0.95244 1.26367 1.09087 0.96199 0.95246 1.71036 1.01988 1.43732 1.47990 0.82981 0.72644 0.72710 0.75675 1.25575 1.21940 1.19581 1.23326 0.86961 0.95471 0.99226 0.88234 0.90430 0.93280 0.88862 0.88271 0.86321 0.82757 0.88499 0.92820 0.88493 0.89927 0.90046 0.89550 0.90628 0.90623 0.77579 0.82795 0.95483 0.91282 0.95631 0.91657 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.12 71.98 0.66 -1.78 16 2 C 0.08 1.47 5.62 86.38 0.49 1.96 16 3 N -0.59 -18.19 2.80 -800.36 -2.24 -20.44 16 4 C 0.51 20.60 7.00 86.70 0.61 21.21 16 5 O -0.47 -25.14 8.35 -4.01 -0.03 -25.17 16 6 C -0.22 -7.64 5.54 -19.99 -0.11 -7.75 16 7 C -0.02 -0.70 9.66 22.46 0.22 -0.48 16 8 C -0.18 -5.32 9.38 22.23 0.21 -5.11 16 9 C 0.32 8.43 6.20 133.25 0.83 9.25 16 10 N -0.47 -10.16 5.28 -689.41 -3.64 -13.80 16 11 C 0.04 0.61 6.03 86.65 0.52 1.13 16 12 C -0.12 -1.23 7.06 31.80 0.22 -1.01 16 13 C -0.13 -1.42 6.93 31.48 0.22 -1.21 16 14 C 0.03 0.55 6.34 86.45 0.55 1.10 16 15 N -0.52 -14.03 8.10 -192.32 -1.56 -15.58 16 16 C 0.14 3.75 8.63 85.04 0.73 4.48 16 17 C 0.13 4.15 4.66 45.55 0.21 4.36 16 18 C 0.10 3.96 8.22 83.18 0.68 4.65 16 19 N -0.63 -32.33 2.08 -738.02 -1.53 -33.86 16 20 C -0.21 -13.51 9.11 84.04 0.77 -12.74 16 21 H 0.03 2.06 8.05 -2.91 -0.02 2.04 16 22 C -0.08 -5.32 4.98 84.86 0.42 -4.89 16 23 N -1.00 -71.45 13.70 21.65 0.30 -71.16 16 24 Si 1.13 63.10 23.96 68.60 1.64 64.75 16 25 H -0.33 -18.87 7.11 99.48 0.71 -18.16 16 26 H -0.29 -15.80 6.03 99.48 0.60 -15.20 16 27 H -0.27 -13.43 6.71 99.48 0.67 -12.76 16 28 C 0.08 3.17 4.97 83.27 0.41 3.58 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.98 7.65 -2.39 -0.02 0.96 16 31 H 0.05 0.85 6.92 -2.39 -0.02 0.83 16 32 H 0.09 1.83 4.08 -2.39 -0.01 1.82 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 4.84 7.93 -2.91 -0.02 4.82 16 35 H 0.15 3.80 8.01 -2.91 -0.02 3.77 16 36 H 0.10 1.40 8.11 -2.39 -0.02 1.38 16 37 H 0.05 0.88 7.99 -2.39 -0.02 0.86 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.49 6.48 -2.39 -0.02 1.48 16 43 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.21 4.52 2.77 -2.91 -0.01 4.51 16 45 H 0.15 2.98 7.71 -2.39 -0.02 2.96 16 46 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.23 16.96 8.73 -92.71 -0.81 16.16 16 49 H 0.07 2.49 8.06 -2.38 -0.02 2.47 16 50 H 0.04 1.73 3.50 -2.39 -0.01 1.72 16 Total: -1.00 -90.28 372.84 1.34 -88.94 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.77 Total: 9.57 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 7.63 Total: 16.76 kcal Atomic # 7 Polarization: -146.16 SS G_CDS: -8.68 Total: -154.84 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.03 Total: -25.17 kcal Atomic # 14 Polarization: 63.10 SS G_CDS: 1.64 Total: 64.75 kcal Total: -90.28 1.34 -88.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956961291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.276 kcal (2) G-P(sol) polarization free energy of solvation -90.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds