Wall clock time and date at job start Wed Apr 1 2020 03:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46851 * 2 1 4 4 N 1.46499 * 109.46768 * 119.99575 * 2 1 3 5 5 C 1.34777 * 120.00057 * 275.00038 * 4 2 1 6 6 O 1.21515 * 119.99789 * 0.02562 * 5 4 2 7 7 C 1.48186 * 119.99963 * 180.02562 * 5 4 2 8 8 C 1.39030 * 119.68831 * 179.97438 * 7 5 4 9 9 C 1.39451 * 118.95510 * 179.97438 * 8 7 5 10 10 N 1.39200 * 120.83095 * 180.02562 * 9 8 7 11 11 C 1.47839 * 111.00025 * 22.97602 * 10 9 8 12 12 C 1.54902 * 104.79824 * 146.36299 * 11 10 9 13 13 C 1.55137 * 101.65287 * 322.93105 * 12 11 10 14 14 C 1.47442 * 111.00067 * 143.81874 * 10 9 8 15 15 C 1.39420 * 118.33545 * 0.27238 * 9 8 7 16 16 C 1.38228 * 119.26379 * 359.45797 * 15 9 8 17 17 N 1.31649 * 120.99155 * 0.56014 * 16 15 9 18 18 C 1.52998 * 109.47099 * 239.99929 * 2 1 3 19 19 C 1.53944 * 113.74049 * 158.74572 * 18 2 1 20 20 N 1.47811 * 86.03453 * 222.08189 * 19 18 2 21 21 C 1.36945 * 134.45645 * 204.64646 * 20 19 18 22 22 H 1.07999 * 120.00143 * 179.86880 * 21 20 19 23 23 C 1.38806 * 119.99824 * 359.85868 * 21 20 19 24 24 N 1.31624 * 120.00110 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00110 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46994 * 60.00044 * 25 23 21 27 27 H 1.48501 * 109.47267 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46819 * 300.00327 * 25 23 21 29 29 C 1.47582 * 91.05436 * 24.54773 * 20 19 18 30 30 H 1.09003 * 109.47032 * 60.00446 * 1 2 3 31 31 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47383 * 300.00266 * 1 2 3 33 33 H 0.97002 * 120.00045 * 95.00053 * 4 2 1 34 34 H 1.07994 * 120.52595 * 359.96047 * 8 7 5 35 35 H 1.08998 * 110.37638 * 27.53281 * 11 10 9 36 36 H 1.08995 * 110.37339 * 265.19232 * 11 10 9 37 37 H 1.08996 * 110.99673 * 204.83871 * 12 11 10 38 38 H 1.09005 * 110.99113 * 81.01987 * 12 11 10 39 39 H 1.09007 * 110.71007 * 154.03272 * 13 12 11 40 40 H 1.08999 * 110.70574 * 277.26712 * 13 12 11 41 41 H 1.08999 * 109.88769 * 117.33110 * 14 10 9 42 42 H 1.09008 * 109.88535 * 356.14717 * 14 10 9 43 43 H 1.08000 * 120.36502 * 179.72285 * 15 9 8 44 44 H 1.08002 * 119.50271 * 180.24927 * 16 15 9 45 45 H 1.09006 * 112.94182 * 290.32888 * 18 2 1 46 46 H 1.09004 * 113.76829 * 336.33945 * 19 18 2 47 47 H 1.08991 * 113.77417 * 107.74493 * 19 18 2 48 48 H 0.97000 * 119.99797 * 180.02562 * 24 23 21 49 49 H 1.09004 * 113.76846 * 221.15752 * 29 20 19 50 50 H 1.09000 * 113.87169 * 89.76495 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8576 1.1608 2.4117 7 6 2.6414 -0.7165 3.5670 8 6 2.7721 -0.0164 4.7611 9 6 3.2383 -0.6888 5.8903 10 7 3.3837 -0.0262 7.1059 11 6 2.5175 1.1704 7.1639 12 6 2.0941 1.2807 8.6498 13 6 1.9227 -0.2114 9.0384 14 6 3.0389 -0.9105 8.2342 15 6 3.5601 -2.0401 5.7701 16 6 3.3974 -2.6673 4.5491 17 7 2.9550 -2.0055 3.5006 18 6 2.0400 -0.7213 -1.2492 19 6 3.4848 -0.3521 -1.6316 20 7 2.9979 -0.3178 -3.0267 21 6 3.5876 -0.4759 -4.2526 22 1 2.9930 -0.4039 -5.1512 23 6 4.9497 -0.7285 -4.3400 24 7 5.6744 -0.8165 -3.2448 25 14 5.7543 -0.9435 -6.0121 26 1 5.5663 0.2919 -6.8144 27 1 7.2056 -1.2022 -5.8335 28 1 5.1304 -2.0916 -6.7176 29 6 1.6214 -0.0472 -2.5684 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1528 34 1 2.5169 1.0316 4.8133 35 1 1.6419 1.0363 6.5288 36 1 3.0745 2.0571 6.8612 37 1 1.1524 1.8205 8.7486 38 1 2.8766 1.7517 9.2449 39 1 2.0739 -0.3508 10.1089 40 1 0.9420 -0.5783 8.7357 41 1 3.9132 -1.0617 8.8674 42 1 2.6805 -1.8688 7.8582 43 1 3.9283 -2.5916 6.6226 44 1 3.6417 -3.7149 4.4526 45 1 1.8529 -1.7949 -1.2261 46 1 3.8048 0.6191 -1.2539 47 1 4.2071 -1.1447 -1.4365 48 1 6.6263 -0.9927 -3.3060 49 1 0.8587 -0.5971 -3.1200 50 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970087777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:42 Heat of formation + Delta-G solvation = 66.734674 kcal Electronic energy + Delta-G solvation = -29642.560748 eV Core-core repulsion = 25671.637941 eV Total energy + Delta-G solvation = -3970.922807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.24380 -39.75271 -38.64778 -37.81584 -34.78170 -33.77431 -32.21338 -31.86588 -30.37578 -29.63169 -29.38696 -27.45786 -25.24983 -24.47867 -23.94867 -23.71540 -22.16106 -21.39174 -20.96722 -20.13934 -19.20195 -18.12605 -16.99724 -16.78985 -16.60556 -16.29129 -15.71422 -15.56525 -15.01924 -14.83250 -14.68125 -14.42655 -14.05564 -13.95865 -13.78957 -13.57775 -13.43243 -13.27585 -12.99996 -12.68490 -12.39355 -12.06407 -11.96830 -11.81540 -11.62662 -11.59646 -11.27410 -11.24651 -11.22385 -10.85670 -10.68731 -10.67406 -10.31873 -10.19538 -9.88763 -9.68920 -9.57891 -9.39127 -9.33544 -8.73630 -8.71141 -8.61168 -6.81076 -5.70190 -3.02586 0.54462 1.01684 2.75915 3.15622 3.34890 3.43548 3.47199 3.48849 3.82893 3.98484 4.03510 4.13677 4.39940 4.50413 4.57058 4.66578 4.73008 4.82655 4.96721 4.99714 5.11130 5.21198 5.24334 5.28147 5.31142 5.34278 5.36159 5.42084 5.44109 5.52250 5.59350 5.60362 5.67187 5.72345 5.87080 6.01641 6.09752 6.19683 6.30819 6.36447 6.41792 6.46455 6.65288 6.66419 6.72872 6.87167 7.31108 7.43976 7.56236 7.63386 7.86424 8.04532 8.37647 9.10677 9.77051 10.66980 11.46715 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.002083 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.773956 B =13436.181642 C =14105.669407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.088 0.912 4 N -0.693 5.693 5 C 0.569 3.431 6 O -0.539 6.539 7 C 0.113 3.887 8 C -0.160 4.160 9 C 0.146 3.854 10 N -0.473 5.473 11 C 0.033 3.967 12 C -0.130 4.130 13 C -0.143 4.143 14 C 0.036 3.964 15 C -0.198 4.198 16 C 0.126 3.874 17 N -0.479 5.479 18 C -0.146 4.146 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.131 3.869 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.411 0.589 34 H 0.149 0.851 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.164 0.836 45 H 0.089 0.911 46 H 0.026 0.974 47 H 0.072 0.928 48 H 0.254 0.746 49 H 0.044 0.956 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 -2.048 27.546 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.106 0.894 4 N -0.343 5.343 5 C 0.353 3.647 6 O -0.416 6.416 7 C -0.025 4.025 8 C -0.184 4.184 9 C 0.038 3.962 10 N -0.186 5.186 11 C -0.092 4.092 12 C -0.168 4.168 13 C -0.181 4.181 14 C -0.089 4.089 15 C -0.221 4.221 16 C -0.033 4.033 17 N -0.192 5.192 18 C -0.166 4.166 19 C 0.046 3.954 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.004 3.996 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.167 0.833 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.158 0.842 44 H 0.181 0.819 45 H 0.107 0.893 46 H 0.043 0.957 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.854 -1.479 26.625 28.097 hybrid contribution 0.322 -0.251 -0.145 0.433 sum -8.531 -1.730 26.480 27.874 Atomic orbital electron populations 1.22130 0.95561 1.01844 1.02069 1.21173 0.93562 0.97618 0.83296 0.89366 1.45949 1.64672 1.14808 1.08843 1.17850 0.78086 0.86015 0.82796 1.90761 1.50999 1.15075 1.84809 1.21079 0.97484 0.90368 0.93613 1.21929 1.02146 1.02355 0.91980 1.19357 0.93405 0.92230 0.91174 1.60283 1.49970 1.07312 1.01074 1.23379 0.95513 0.92654 0.97688 1.22742 1.02347 0.96540 0.95171 1.22808 0.98804 0.95563 1.00924 1.23152 0.98791 0.95369 0.91594 1.22019 1.05855 0.93695 1.00520 1.22618 0.93426 1.00075 0.87191 1.67636 1.11815 1.07853 1.31900 1.23819 1.00934 0.99756 0.92109 1.22293 0.91442 0.98510 0.83184 1.45991 1.03296 1.82593 1.02013 1.18974 0.91420 1.41671 0.82972 0.90349 1.24790 0.96080 1.02469 0.97224 1.69817 1.06108 1.55114 1.25771 0.86207 0.78423 0.77947 0.83217 1.21239 1.21600 1.21118 1.22488 0.89649 0.96585 0.90879 0.91320 0.92640 0.92817 0.75315 0.83290 0.91372 0.88903 0.89980 0.90181 0.89995 0.90943 0.89406 0.90847 0.84248 0.81915 0.89276 0.95659 0.90974 0.93642 0.93766 0.94780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.31 37.16 0.35 -1.85 16 2 C 0.15 2.43 2.38 -67.93 -0.16 2.27 16 3 H 0.09 1.64 7.42 -51.93 -0.39 1.25 16 4 N -0.69 -10.81 5.07 -54.64 -0.28 -11.09 16 5 C 0.57 9.24 7.78 -12.17 -0.09 9.14 16 6 O -0.54 -9.99 15.98 5.35 0.09 -9.91 16 7 C 0.11 1.59 6.75 -83.06 -0.56 1.03 16 8 C -0.16 -1.99 8.24 -38.84 -0.32 -2.31 16 9 C 0.15 1.50 5.79 -83.62 -0.48 1.02 16 10 N -0.47 -4.07 5.26 -167.75 -0.88 -4.95 16 11 C 0.03 0.25 5.52 -2.30 -0.01 0.23 16 12 C -0.13 -0.67 7.08 -24.60 -0.17 -0.85 16 13 C -0.14 -0.67 6.94 -24.91 -0.17 -0.85 16 14 C 0.04 0.22 6.22 -2.84 -0.02 0.20 16 15 C -0.20 -1.76 8.66 -39.14 -0.34 -2.10 16 16 C 0.13 1.25 11.17 -17.63 -0.20 1.05 16 17 N -0.48 -6.22 9.54 -9.89 -0.09 -6.31 16 18 C -0.15 -2.75 3.47 -89.70 -0.31 -3.06 16 19 C 0.17 4.15 7.08 -2.84 -0.02 4.13 16 20 N -0.61 -16.16 3.70 -177.72 -0.66 -16.81 16 21 C -0.22 -6.41 10.70 -15.06 -0.16 -6.58 16 22 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -28.08 11.39 55.49 0.63 -27.45 16 25 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.13 2.69 7.64 -2.97 -0.02 2.67 16 30 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.41 6.02 7.93 -40.82 -0.32 5.70 16 34 H 0.15 1.83 6.12 -52.49 -0.32 1.51 16 35 H 0.07 0.55 6.54 -51.93 -0.34 0.21 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.41 5.98 -51.92 -0.31 0.10 16 43 H 0.14 0.87 6.87 -52.49 -0.36 0.51 16 44 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 45 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 46 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 47 H 0.07 1.93 7.16 -51.93 -0.37 1.56 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -34.49 399.28 -10.84 -45.32 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.83 Total: 3.75 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.80 Total: 3.80 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -1.28 Total: -66.61 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.49 -10.84 -45.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970087777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.059 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds