Wall clock time and date at job start Wed Apr 1 2020 03:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46851 * 2 1 4 4 N 1.46499 * 109.46768 * 119.99575 * 2 1 3 5 5 C 1.34777 * 120.00057 * 275.00038 * 4 2 1 6 6 O 1.21515 * 119.99789 * 0.02562 * 5 4 2 7 7 C 1.48186 * 119.99963 * 180.02562 * 5 4 2 8 8 C 1.39030 * 119.68831 * 179.97438 * 7 5 4 9 9 C 1.39451 * 118.95510 * 179.97438 * 8 7 5 10 10 N 1.39200 * 120.83095 * 180.02562 * 9 8 7 11 11 C 1.47839 * 111.00025 * 22.97602 * 10 9 8 12 12 C 1.54902 * 104.79824 * 146.36299 * 11 10 9 13 13 C 1.55137 * 101.65287 * 322.93105 * 12 11 10 14 14 C 1.47442 * 111.00067 * 143.81874 * 10 9 8 15 15 C 1.39420 * 118.33545 * 0.27238 * 9 8 7 16 16 C 1.38228 * 119.26379 * 359.45797 * 15 9 8 17 17 N 1.31649 * 120.99155 * 0.56014 * 16 15 9 18 18 C 1.52998 * 109.47099 * 239.99929 * 2 1 3 19 19 C 1.53944 * 113.74049 * 158.74572 * 18 2 1 20 20 N 1.47811 * 86.03453 * 222.08189 * 19 18 2 21 21 C 1.36945 * 134.45645 * 204.64646 * 20 19 18 22 22 H 1.07999 * 120.00143 * 179.86880 * 21 20 19 23 23 C 1.38806 * 119.99824 * 359.85868 * 21 20 19 24 24 N 1.31624 * 120.00110 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00110 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46994 * 60.00044 * 25 23 21 27 27 H 1.48501 * 109.47267 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46819 * 300.00327 * 25 23 21 29 29 C 1.47582 * 91.05436 * 24.54773 * 20 19 18 30 30 H 1.09003 * 109.47032 * 60.00446 * 1 2 3 31 31 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47383 * 300.00266 * 1 2 3 33 33 H 0.97002 * 120.00045 * 95.00053 * 4 2 1 34 34 H 1.07994 * 120.52595 * 359.96047 * 8 7 5 35 35 H 1.08998 * 110.37638 * 27.53281 * 11 10 9 36 36 H 1.08995 * 110.37339 * 265.19232 * 11 10 9 37 37 H 1.08996 * 110.99673 * 204.83871 * 12 11 10 38 38 H 1.09005 * 110.99113 * 81.01987 * 12 11 10 39 39 H 1.09007 * 110.71007 * 154.03272 * 13 12 11 40 40 H 1.08999 * 110.70574 * 277.26712 * 13 12 11 41 41 H 1.08999 * 109.88769 * 117.33110 * 14 10 9 42 42 H 1.09008 * 109.88535 * 356.14717 * 14 10 9 43 43 H 1.08000 * 120.36502 * 179.72285 * 15 9 8 44 44 H 1.08002 * 119.50271 * 180.24927 * 16 15 9 45 45 H 1.09006 * 112.94182 * 290.32888 * 18 2 1 46 46 H 1.09004 * 113.76829 * 336.33945 * 19 18 2 47 47 H 1.08991 * 113.77417 * 107.74493 * 19 18 2 48 48 H 0.97000 * 119.99797 * 180.02562 * 24 23 21 49 49 H 1.09004 * 113.76846 * 221.15752 * 29 20 19 50 50 H 1.09000 * 113.87169 * 89.76495 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8576 1.1608 2.4117 7 6 2.6414 -0.7165 3.5670 8 6 2.7721 -0.0164 4.7611 9 6 3.2383 -0.6888 5.8903 10 7 3.3837 -0.0262 7.1059 11 6 2.5175 1.1704 7.1639 12 6 2.0941 1.2807 8.6498 13 6 1.9227 -0.2114 9.0384 14 6 3.0389 -0.9105 8.2342 15 6 3.5601 -2.0401 5.7701 16 6 3.3974 -2.6673 4.5491 17 7 2.9550 -2.0055 3.5006 18 6 2.0400 -0.7213 -1.2492 19 6 3.4848 -0.3521 -1.6316 20 7 2.9979 -0.3178 -3.0267 21 6 3.5876 -0.4759 -4.2526 22 1 2.9930 -0.4039 -5.1512 23 6 4.9497 -0.7285 -4.3400 24 7 5.6744 -0.8165 -3.2448 25 14 5.7543 -0.9435 -6.0121 26 1 5.5663 0.2919 -6.8144 27 1 7.2056 -1.2022 -5.8335 28 1 5.1304 -2.0916 -6.7176 29 6 1.6214 -0.0472 -2.5684 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1528 34 1 2.5169 1.0316 4.8133 35 1 1.6419 1.0363 6.5288 36 1 3.0745 2.0571 6.8612 37 1 1.1524 1.8205 8.7486 38 1 2.8766 1.7517 9.2449 39 1 2.0739 -0.3508 10.1089 40 1 0.9420 -0.5783 8.7357 41 1 3.9132 -1.0617 8.8674 42 1 2.6805 -1.8688 7.8582 43 1 3.9283 -2.5916 6.6226 44 1 3.6417 -3.7149 4.4526 45 1 1.8529 -1.7949 -1.2261 46 1 3.8048 0.6191 -1.2539 47 1 4.2071 -1.1447 -1.4365 48 1 6.6263 -0.9927 -3.3060 49 1 0.8587 -0.5971 -3.1200 50 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970087777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:41 Heat of formation + Delta-G solvation = 42.987410 kcal Electronic energy + Delta-G solvation = -29643.590507 eV Core-core repulsion = 25671.637941 eV Total energy + Delta-G solvation = -3971.952565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06911 -40.92370 -39.82407 -39.12429 -36.25502 -34.50745 -34.11101 -32.87960 -31.63540 -30.33024 -30.03811 -29.35041 -26.75096 -25.91648 -25.33598 -24.62963 -23.23229 -22.32501 -21.80522 -21.35903 -20.64044 -19.17398 -18.74512 -17.92428 -17.56159 -17.16074 -16.91776 -16.70025 -16.41499 -16.19022 -15.81731 -15.67883 -15.18041 -14.97399 -14.85917 -14.68487 -14.54822 -14.22503 -14.09450 -13.90054 -13.45717 -13.30558 -13.24053 -13.09499 -12.89730 -12.70220 -12.68554 -12.57150 -12.22928 -12.12454 -12.03793 -11.75324 -11.65514 -11.54511 -11.36869 -11.34220 -11.18510 -10.86234 -10.58630 -10.32782 -10.01245 -9.31679 -8.92598 -7.89966 -5.24307 -0.38557 0.20306 1.44219 1.48570 1.54612 1.67571 2.03532 2.47481 2.58666 2.90213 3.13948 3.30345 3.38045 3.45834 3.55989 3.72963 3.83694 3.88093 3.93276 4.00283 4.07293 4.22719 4.28816 4.32179 4.44610 4.48590 4.49633 4.57901 4.66577 4.70199 4.73914 4.79667 4.80347 4.82323 4.85578 4.86907 4.99491 5.00539 5.06438 5.07841 5.25312 5.26422 5.32148 5.42007 5.47154 5.54784 5.65103 5.72404 5.93061 5.95687 6.42618 6.85055 6.90889 7.13983 7.60838 8.56826 9.26772 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.002083 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.773956 B =13436.181642 C =14105.669407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.063 0.937 4 N -0.691 5.691 5 C 0.565 3.435 6 O -0.571 6.571 7 C 0.089 3.911 8 C -0.170 4.170 9 C 0.145 3.855 10 N -0.481 5.481 11 C 0.027 3.973 12 C -0.125 4.125 13 C -0.138 4.138 14 C 0.031 3.969 15 C -0.184 4.184 16 C 0.122 3.878 17 N -0.499 5.499 18 C -0.110 4.110 19 C 0.168 3.832 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.087 0.913 23 C -0.073 4.073 24 N -0.956 5.956 25 Si 0.982 3.018 26 H -0.278 1.278 27 H -0.296 1.296 28 H -0.272 1.272 29 C 0.133 3.867 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.416 0.584 34 H 0.139 0.861 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.174 0.826 44 H 0.197 0.803 45 H 0.103 0.897 46 H 0.002 0.998 47 H 0.039 0.961 48 H 0.247 0.753 49 H 0.067 0.933 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 -3.576 29.000 31.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 H 0.082 0.918 4 N -0.340 5.340 5 C 0.351 3.649 6 O -0.451 6.451 7 C -0.048 4.048 8 C -0.195 4.195 9 C 0.036 3.964 10 N -0.194 5.194 11 C -0.098 4.098 12 C -0.163 4.163 13 C -0.176 4.176 14 C -0.093 4.093 15 C -0.206 4.206 16 C -0.037 4.037 17 N -0.213 5.213 18 C -0.130 4.130 19 C 0.042 3.958 20 N -0.370 5.370 21 C -0.364 4.364 22 H 0.105 0.895 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.810 3.190 26 H -0.204 1.204 27 H -0.222 1.222 28 H -0.198 1.198 29 C 0.008 3.992 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.191 0.809 44 H 0.213 0.787 45 H 0.121 0.879 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.086 0.914 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.008 -3.010 28.091 29.972 hybrid contribution 0.689 0.240 -0.481 0.874 sum -9.319 -2.769 27.610 29.272 Atomic orbital electron populations 1.22045 0.92870 1.03168 1.02524 1.20966 0.95439 0.95871 0.82606 0.91844 1.45888 1.64644 1.14944 1.08538 1.18245 0.77406 0.85755 0.83516 1.90726 1.52493 1.16430 1.85453 1.20761 0.99759 0.91252 0.93058 1.21912 1.02960 1.02104 0.92498 1.19536 0.92771 0.92844 0.91234 1.60324 1.50023 1.07966 1.01105 1.23409 0.94913 0.92126 0.99348 1.22745 1.02923 0.97352 0.93269 1.22815 0.98315 0.94663 1.01832 1.23313 0.99840 0.95255 0.90894 1.22378 1.04036 0.93023 1.01211 1.23226 0.92317 1.01346 0.86777 1.67588 1.12834 1.07353 1.33531 1.23448 0.96323 1.00516 0.92718 1.22154 0.94024 0.96314 0.83298 1.46420 1.05883 1.82870 1.01872 1.19442 0.91966 1.40564 0.84402 0.89545 1.25708 0.96841 1.02989 1.00975 1.70035 1.05828 1.56693 1.27970 0.85103 0.76810 0.78301 0.78825 1.20423 1.22177 1.19779 1.22676 0.87641 0.97621 0.91307 0.90186 0.90839 0.93045 0.74712 0.84290 0.92400 0.89738 0.89034 0.89657 0.88118 0.90994 0.88159 0.90099 0.80877 0.78666 0.87907 0.98007 0.94236 0.94377 0.91440 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.31 71.98 0.67 -3.24 16 2 C 0.16 5.14 2.38 44.99 0.11 5.25 16 3 H 0.06 2.44 7.42 -2.39 -0.02 2.42 16 4 N -0.69 -22.01 5.07 -445.07 -2.26 -24.27 16 5 C 0.57 19.18 7.78 86.89 0.68 19.85 16 6 O -0.57 -22.33 15.98 -3.76 -0.06 -22.39 16 7 C 0.09 2.59 6.75 41.83 0.28 2.87 16 8 C -0.17 -4.37 8.24 22.75 0.19 -4.18 16 9 C 0.14 2.86 5.79 38.55 0.22 3.08 16 10 N -0.48 -7.69 5.26 -684.63 -3.60 -11.29 16 11 C 0.03 0.41 5.52 86.77 0.48 0.88 16 12 C -0.12 -1.10 7.08 31.98 0.23 -0.88 16 13 C -0.14 -0.96 6.94 31.77 0.22 -0.74 16 14 C 0.03 0.29 6.22 86.65 0.54 0.83 16 15 C -0.18 -2.85 8.66 22.55 0.20 -2.65 16 16 C 0.12 2.20 11.17 84.72 0.95 3.15 16 17 N -0.50 -12.82 9.54 -185.21 -1.77 -14.58 16 18 C -0.11 -4.12 3.47 -10.14 -0.04 -4.16 16 19 C 0.17 8.46 7.08 86.44 0.61 9.07 16 20 N -0.64 -34.34 3.70 -716.18 -2.65 -37.00 16 21 C -0.24 -13.65 10.70 84.03 0.90 -12.75 16 22 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 23 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 24 N -0.96 -60.25 11.39 21.65 0.25 -60.01 16 25 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 29 C 0.13 5.34 7.64 86.49 0.66 6.00 16 30 H 0.08 1.93 7.52 -2.39 -0.02 1.92 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.42 12.33 7.93 -92.71 -0.74 11.59 16 34 H 0.14 3.72 6.12 -2.91 -0.02 3.70 16 35 H 0.06 0.97 6.54 -2.39 -0.02 0.96 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.65 5.98 -2.38 -0.01 0.63 16 43 H 0.17 1.47 6.87 -2.91 -0.02 1.45 16 44 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.10 3.61 8.14 -2.38 -0.02 3.59 16 46 H 0.00 0.12 7.99 -2.38 -0.02 0.10 16 47 H 0.04 2.23 7.16 -2.39 -0.02 2.21 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 Total: -1.00 -77.69 399.28 -0.49 -78.18 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.22 Total: 23.66 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 7.36 Total: 18.56 kcal Atomic # 7 Polarization: -137.11 SS G_CDS: -10.03 Total: -147.14 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.39 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -77.69 -0.49 -78.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970087777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.169 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds