Wall clock time and date at job start Wed Apr 1 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21483 * 119.99853 * 0.02562 * 5 4 2 7 7 C 1.48458 * 119.99981 * 179.97438 * 5 4 2 8 8 C 1.39529 * 120.55105 * 180.02562 * 7 5 4 9 9 C 1.38759 * 118.26640 * 179.97438 * 8 7 5 10 10 N 1.32209 * 119.14285 * 0.02562 * 9 8 7 11 11 C 1.31873 * 121.03648 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.03833 * 180.02562 * 11 10 9 13 13 C 1.54272 * 110.03441 * 57.90925 * 12 11 10 14 14 C 1.54966 * 104.16175 * 217.13703 * 13 12 11 15 15 C 1.54890 * 102.77713 * 37.88418 * 14 13 12 16 16 C 1.53878 * 110.03559 * 300.68917 * 12 11 10 17 17 N 1.31581 * 121.92133 * 359.73867 * 11 10 9 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.08001 * 120.87012 * 359.96275 * 8 7 5 35 35 H 1.07993 * 120.42875 * 179.97438 * 9 8 7 36 36 H 1.09003 * 110.02020 * 179.30044 * 12 11 10 37 37 H 1.09001 * 110.48083 * 335.78561 * 13 12 11 38 38 H 1.09003 * 110.48828 * 98.42359 * 13 12 11 39 39 H 1.09004 * 110.71453 * 279.57100 * 14 13 12 40 40 H 1.08998 * 110.76642 * 156.22429 * 14 13 12 41 41 H 1.08995 * 110.48696 * 203.40530 * 15 14 13 42 42 H 1.09000 * 110.59755 * 80.82011 * 15 14 13 43 43 H 1.08993 * 110.03203 * 238.56965 * 16 12 11 44 44 H 1.09000 * 110.02745 * 359.95492 * 16 12 11 45 45 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 46 46 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 47 47 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 48 48 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 49 49 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 50 50 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8585 1.1605 -2.4116 7 6 2.6426 -0.7180 -3.5691 8 6 2.7807 -0.0331 -4.7768 9 6 3.2484 -0.7333 -5.8796 10 7 3.5446 -2.0153 -5.7501 11 6 3.4023 -2.6325 -4.5935 12 6 3.7539 -4.0947 -4.4964 13 6 5.2249 -4.3129 -4.9070 14 6 5.2092 -5.6611 -5.6710 15 6 3.8756 -5.5946 -6.4559 16 6 2.8962 -4.9095 -5.4804 17 7 2.9676 -2.0075 -3.5202 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.5298 1.0147 -4.8514 35 1 3.3683 -0.2378 -6.8316 36 1 3.5937 -4.4503 -3.4786 37 1 5.5619 -3.5082 -5.5604 38 1 5.8612 -4.3809 -4.0246 39 1 5.2059 -6.4992 -4.9741 40 1 6.0563 -5.7283 -6.3537 41 1 3.5282 -6.5976 -6.7035 42 1 3.9925 -4.9982 -7.3607 43 1 2.3205 -5.6610 -4.9402 44 1 2.2251 -4.2474 -6.0276 45 1 1.9119 -1.8028 1.2077 46 1 0.8095 -0.6492 3.0816 47 1 1.3545 0.9763 2.4855 48 1 4.8450 -0.6714 6.4568 49 1 3.6837 0.7494 1.3999 50 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970666056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:08 Heat of formation + Delta-G solvation = 62.158627 kcal Electronic energy + Delta-G solvation = -29923.067994 eV Core-core repulsion = 25951.946755 eV Total energy + Delta-G solvation = -3971.121239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68910 -39.93046 -38.65601 -38.07317 -35.19836 -34.22719 -32.81489 -32.41218 -30.70003 -29.02902 -28.93858 -27.77409 -26.16970 -25.27567 -24.18649 -23.70791 -21.84226 -20.98512 -20.73748 -20.22995 -19.42555 -18.24475 -17.93299 -17.47207 -16.37603 -16.10335 -15.83899 -15.65687 -15.62036 -15.31065 -14.87620 -14.56010 -14.32368 -13.88761 -13.76061 -13.70460 -13.58392 -13.16940 -13.02335 -12.36893 -12.11676 -11.93322 -11.90109 -11.85085 -11.55914 -11.45736 -11.38374 -11.16955 -11.15133 -10.99290 -10.95446 -10.86366 -10.69314 -10.53397 -10.36843 -10.21726 -9.83632 -9.60548 -9.30625 -9.14001 -8.98051 -8.90597 -7.16995 -6.29669 -3.23785 0.19202 0.56135 2.55015 2.81679 3.37299 3.40766 3.44793 3.46847 3.64585 3.65460 4.25816 4.30515 4.33541 4.42556 4.58609 4.59428 4.67375 4.72920 4.86851 5.03540 5.06290 5.11385 5.17936 5.21937 5.24877 5.36529 5.39800 5.40172 5.46739 5.53330 5.55940 5.60471 5.72515 5.73020 5.82695 5.85767 5.92313 5.96810 5.98751 6.06568 6.10553 6.21535 6.25009 6.27131 6.36516 6.43769 6.54998 6.89465 7.11387 7.36055 7.66078 7.99883 8.23305 8.97317 9.49642 10.36149 11.20307 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.002835 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.533577 B = 9873.782288 C =11333.108580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.093 0.907 4 N -0.694 5.694 5 C 0.568 3.432 6 O -0.527 6.527 7 C 0.138 3.862 8 C -0.178 4.178 9 C 0.151 3.849 10 N -0.499 5.499 11 C 0.327 3.673 12 C -0.028 4.028 13 C -0.113 4.113 14 C -0.122 4.122 15 C -0.120 4.120 16 C -0.109 4.109 17 N -0.493 5.493 18 C -0.140 4.140 19 C 0.135 3.865 20 N -0.629 5.629 21 C -0.303 4.303 22 H 0.083 0.917 23 C -0.025 4.025 24 N -0.934 5.934 25 Si 1.069 2.931 26 H -0.295 1.295 27 H -0.293 1.293 28 H -0.288 1.288 29 C 0.102 3.898 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.047 0.953 47 H 0.040 0.960 48 H 0.261 0.739 49 H 0.045 0.955 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 -6.379 -28.218 29.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.111 0.889 4 N -0.344 5.344 5 C 0.351 3.649 6 O -0.402 6.402 7 C -0.010 4.010 8 C -0.201 4.201 9 C -0.017 4.017 10 N -0.213 5.213 11 C 0.060 3.940 12 C -0.048 4.048 13 C -0.152 4.152 14 C -0.160 4.160 15 C -0.158 4.158 16 C -0.147 4.147 17 N -0.209 5.209 18 C -0.160 4.160 19 C 0.008 3.992 20 N -0.357 5.357 21 C -0.429 4.429 22 H 0.101 0.899 23 C -0.223 4.223 24 N -0.576 5.576 25 Si 0.902 3.098 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.215 1.215 29 C -0.023 4.023 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.248 0.752 34 H 0.178 0.822 35 H 0.194 0.806 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.118 0.882 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.005 -6.593 -28.319 29.504 hybrid contribution -1.745 0.812 0.513 1.991 sum -6.750 -5.781 -27.806 29.192 Atomic orbital electron populations 1.22123 0.94833 1.02211 1.02483 1.21152 0.94188 0.97528 0.82660 0.88931 1.46001 1.64648 1.14880 1.08904 1.17792 0.78455 0.86069 0.82592 1.90797 1.50243 1.14722 1.84456 1.21734 0.94492 0.90165 0.94638 1.22977 1.00044 1.03669 0.93404 1.23362 0.90061 0.89437 0.98808 1.68102 1.15765 1.10458 1.26937 1.23110 0.90271 0.97217 0.83435 1.20727 0.96643 0.85517 1.01895 1.22449 0.93849 0.98371 1.00504 1.22489 0.97662 0.97031 0.98787 1.22323 0.94894 1.00186 0.98347 1.22124 0.97680 0.98424 0.96481 1.68216 1.11560 1.08859 1.32269 1.23579 0.99106 1.00427 0.92883 1.22254 0.90094 0.97147 0.89699 1.45965 1.04061 1.83716 1.01914 1.20156 0.92136 1.47618 0.83035 0.89901 1.25704 0.94233 0.99277 1.03133 1.70912 1.37303 1.52244 0.97186 0.83726 0.75764 0.76225 0.74086 1.22206 1.22107 1.21465 1.22836 0.94777 0.98485 0.86205 0.92502 0.92377 0.90964 0.75249 0.82183 0.80625 0.87982 0.90625 0.91090 0.91240 0.91302 0.91663 0.91238 0.91139 0.91600 0.88213 0.93426 0.94265 0.92925 0.93765 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.29 37.16 0.35 -1.57 16 2 C 0.15 2.11 2.47 -67.93 -0.17 1.94 16 3 H 0.09 1.46 7.32 -51.93 -0.38 1.08 16 4 N -0.69 -9.19 5.07 -54.55 -0.28 -9.47 16 5 C 0.57 7.87 7.79 -12.05 -0.09 7.77 16 6 O -0.53 -8.46 16.09 5.38 0.09 -8.37 16 7 C 0.14 1.66 6.79 -82.64 -0.56 1.10 16 8 C -0.18 -1.73 9.72 -38.91 -0.38 -2.10 16 9 C 0.15 1.23 11.31 -17.20 -0.19 1.03 16 10 N -0.50 -4.88 9.39 -10.74 -0.10 -4.99 16 11 C 0.33 3.47 6.16 -157.31 -0.97 2.50 16 12 C -0.03 -0.24 3.29 -90.65 -0.30 -0.54 16 13 C -0.11 -0.90 6.33 -25.03 -0.16 -1.06 16 14 C -0.12 -0.78 6.91 -24.70 -0.17 -0.95 16 15 C -0.12 -0.76 6.83 -25.07 -0.17 -0.94 16 16 C -0.11 -0.80 6.35 -25.61 -0.16 -0.97 16 17 N -0.49 -5.83 9.58 -7.32 -0.07 -5.90 16 18 C -0.14 -2.32 3.67 -89.96 -0.33 -2.65 16 19 C 0.14 2.58 7.33 -8.50 -0.06 2.52 16 20 N -0.63 -15.55 3.69 -184.57 -0.68 -16.23 16 21 C -0.30 -8.84 11.08 -15.06 -0.17 -9.01 16 22 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 23 C -0.02 -0.75 5.50 -17.43 -0.10 -0.84 16 24 N -0.93 -29.85 13.70 55.49 0.76 -29.09 16 25 Si 1.07 27.39 25.16 -169.99 -4.28 23.12 16 26 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 27 H -0.29 -7.06 6.51 56.52 0.37 -6.70 16 28 H -0.29 -6.98 6.21 56.52 0.35 -6.63 16 29 C 0.10 2.18 5.27 -8.36 -0.04 2.13 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 33 H 0.41 5.02 7.99 -40.82 -0.33 4.69 16 34 H 0.16 1.35 7.74 -52.49 -0.41 0.95 16 35 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 37 H 0.08 0.67 7.41 -51.93 -0.38 0.28 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.55 7.51 -51.93 -0.39 0.16 16 45 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 48 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 49 H 0.04 0.95 7.44 -51.93 -0.39 0.57 16 50 H 0.05 1.14 4.73 -51.93 -0.25 0.90 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -34.49 398.70 -10.29 -44.78 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.06 Total: 1.76 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.68 Total: -1.63 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.37 Total: -65.67 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 27.39 SS G_CDS: -4.28 Total: 23.12 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.49 -10.29 -44.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970666056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.939 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds