Wall clock time and date at job start Wed Apr 1 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.58106 * 2 1 4 4 C 1.53263 * 109.57694 * 239.73547 * 2 1 3 5 5 C 1.53160 * 109.44269 * 189.83208 * 4 2 1 6 6 C 1.53378 * 109.23242 * 69.32358 * 5 4 2 7 7 C 1.51117 * 108.24855 * 311.16085 * 6 5 4 8 8 N 1.30552 * 127.09115 * 196.07543 * 7 6 5 9 9 C 1.33450 * 109.68309 * 179.97438 * 8 7 6 10 10 C 1.36836 * 107.83738 * 359.96655 * 9 8 7 11 11 C 1.46768 * 126.91360 * 180.02562 * 10 9 8 12 12 O 1.21676 * 119.99954 * 158.66867 * 11 10 9 13 13 N 1.34779 * 119.99725 * 338.67040 * 11 10 9 14 14 C 1.46500 * 119.99479 * 184.68485 * 13 11 10 15 15 C 1.52998 * 109.46939 * 179.97438 * 14 13 11 16 16 H 1.09002 * 115.51968 * 29.58126 * 15 14 13 17 17 C 1.53002 * 117.44394 * 244.23624 * 15 14 13 18 18 H 1.08998 * 119.53845 * 4.12056 * 17 15 14 19 19 C 1.54388 * 118.12135 * 160.80812 * 17 15 14 20 20 N 1.48144 * 104.61825 * 87.19527 * 19 17 15 21 21 C 1.36934 * 127.83895 * 140.39364 * 20 19 17 22 22 H 1.08003 * 120.00265 * 341.42194 * 21 20 19 23 23 C 1.38811 * 120.00142 * 161.42658 * 21 20 19 24 24 N 1.31625 * 119.99598 * 351.29189 * 23 21 20 25 25 Si 1.86793 * 120.00392 * 171.29541 * 23 21 20 26 26 H 1.48497 * 109.47474 * 94.98146 * 25 23 21 27 27 H 1.48504 * 109.47432 * 214.98215 * 25 23 21 28 28 H 1.48507 * 109.47151 * 334.97964 * 25 23 21 29 29 C 1.48150 * 104.32284 * 320.41253 * 20 19 17 30 30 C 1.52996 * 117.44341 * 174.99722 * 15 14 13 31 31 H 1.09001 * 119.54359 * 355.88572 * 30 15 14 32 32 N 1.34878 * 123.91701 * 16.02940 * 7 6 5 33 33 H 1.09003 * 109.47325 * 205.62164 * 1 2 3 34 34 H 1.08997 * 109.47033 * 325.61931 * 1 2 3 35 35 H 1.08999 * 109.47506 * 85.61976 * 1 2 3 36 36 H 1.09004 * 109.47531 * 309.81355 * 4 2 1 37 37 H 1.09003 * 109.48163 * 69.82876 * 4 2 1 38 38 H 1.09003 * 109.51159 * 189.25747 * 5 4 2 39 39 H 1.09007 * 109.50774 * 309.35125 * 5 4 2 40 40 H 1.09004 * 109.70412 * 70.84908 * 6 5 4 41 41 H 1.08996 * 109.70560 * 191.42744 * 6 5 4 42 42 H 1.07996 * 126.08461 * 179.97438 * 9 8 7 43 43 H 0.96993 * 120.00117 * 4.67820 * 13 11 10 44 44 H 1.08997 * 109.46996 * 299.99477 * 14 13 11 45 45 H 1.08998 * 109.47347 * 60.00032 * 14 13 11 46 46 H 1.09006 * 110.40592 * 205.97500 * 19 17 15 47 47 H 1.08999 * 110.40729 * 328.40546 * 19 17 15 48 48 H 0.97006 * 119.99758 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.40326 * 280.80561 * 29 20 19 50 50 H 1.08994 * 110.40805 * 158.37211 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2472 5 6 3.5552 -0.9426 -1.1260 6 6 3.8323 -1.9734 -0.0245 7 6 3.0443 -1.5779 1.2028 8 7 3.2189 -2.0080 2.4230 9 6 2.3309 -1.4304 3.2346 10 6 1.5574 -0.5909 2.4801 11 6 0.4526 0.2521 2.9520 12 8 0.1022 1.2174 2.2993 13 7 -0.1736 -0.0428 4.1085 14 6 -1.3412 0.7360 4.5284 15 6 -1.8583 0.1995 5.8647 16 1 -1.1052 -0.2450 6.5154 17 6 -3.2576 -0.4190 5.8822 18 1 -3.8113 -0.5221 4.9490 19 6 -3.6261 -1.3523 7.0556 20 7 -4.1390 -0.4448 8.1082 21 6 -5.1979 -0.6505 8.9518 22 1 -5.9419 -1.3959 8.7128 23 6 -5.3150 0.0991 10.1142 24 7 -4.3280 0.8826 10.4943 25 14 -6.8732 -0.0040 11.1392 26 1 -6.6878 -1.0022 12.2229 27 1 -7.1630 1.3251 11.7348 28 1 -8.0079 -0.4170 10.2747 29 6 -3.2469 0.7360 8.0408 30 6 -3.0075 0.9578 6.5318 31 1 -3.3750 1.8805 6.0825 32 7 2.0235 -0.6964 1.1900 33 1 -0.3634 -0.9266 0.4444 34 1 -0.3633 0.8481 0.5803 35 1 -0.3634 0.0785 -1.0246 36 1 1.5454 -1.6933 -1.3355 37 1 1.8315 -0.1271 -2.1318 38 1 3.9481 -1.3086 -2.0745 39 1 4.0378 0.0013 -0.8720 40 1 3.5192 -2.9623 -0.3595 41 1 4.8968 -1.9844 0.2091 42 1 2.2392 -1.5960 4.2979 43 1 0.1487 -0.7708 4.6626 44 1 -1.0583 1.7825 4.6417 45 1 -2.1247 0.6508 3.7755 46 1 -4.3997 -2.0576 6.7518 47 1 -2.7432 -1.8844 7.4097 48 1 -4.4100 1.4068 11.3064 49 1 -2.3047 0.5299 8.5488 50 1 -3.7342 1.6062 8.4804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978189636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:51 Heat of formation + Delta-G solvation = 79.718374 kcal Electronic energy + Delta-G solvation = -29722.759377 eV Core-core repulsion = 25752.399586 eV Total energy + Delta-G solvation = -3970.359791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.79030 -39.64813 -38.67620 -37.48870 -35.12733 -34.00662 -33.38733 -31.07539 -31.01006 -29.83346 -27.77392 -27.16899 -26.87139 -24.94281 -23.28592 -23.12921 -22.29093 -21.20013 -20.63367 -19.91598 -19.31832 -19.24810 -18.01755 -16.83073 -16.56002 -15.91896 -15.89388 -15.60460 -15.09234 -15.04978 -14.76581 -14.56876 -14.33879 -14.09980 -13.72929 -13.61274 -13.36668 -13.20129 -12.87370 -12.70944 -12.58627 -12.44621 -11.98934 -11.86109 -11.65283 -11.63368 -11.28451 -11.18571 -11.07405 -10.83987 -10.67891 -10.62972 -10.32629 -10.14301 -9.98872 -9.94138 -9.77622 -9.42991 -9.17320 -9.01119 -8.67112 -8.61945 -6.85162 -5.82573 -3.17540 1.12027 2.15686 2.57967 3.06485 3.15679 3.36713 3.42585 3.44697 3.83045 4.01215 4.08580 4.14376 4.16930 4.44697 4.52652 4.69410 4.73959 4.82388 4.85356 4.92611 5.05835 5.15374 5.18991 5.25343 5.27194 5.34865 5.36600 5.42499 5.43895 5.46111 5.51838 5.66697 5.72957 5.84471 5.85425 5.92835 5.94682 5.98450 6.19893 6.28937 6.37027 6.53795 6.64546 6.68721 6.78389 6.90095 7.31740 7.34423 7.50741 7.68317 7.69817 8.04036 8.19332 9.09076 9.71878 10.50217 11.32426 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.030614 B = 0.001832 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.380106 B =15281.605095 C =15604.924968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.135 3.865 3 H 0.096 0.904 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.035 4.035 7 C 0.226 3.774 8 N -0.491 5.491 9 C 0.033 3.967 10 C -0.078 4.078 11 C 0.592 3.408 12 O -0.541 6.541 13 N -0.708 5.708 14 C 0.158 3.842 15 C -0.151 4.151 16 H 0.105 0.895 17 C -0.170 4.170 18 H 0.102 0.898 19 C 0.153 3.847 20 N -0.594 5.594 21 C -0.229 4.229 22 H 0.075 0.925 23 C -0.004 4.004 24 N -0.914 5.914 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.186 3.814 30 C -0.161 4.161 31 H 0.103 0.897 32 N -0.417 5.417 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.180 0.820 43 H 0.405 0.595 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.025 0.975 48 H 0.254 0.746 49 H 0.026 0.974 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.915 -3.072 -24.790 29.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.033 3.967 3 H 0.114 0.886 4 C -0.171 4.171 5 C -0.166 4.166 6 C -0.074 4.074 7 C -0.036 4.036 8 N -0.209 5.209 9 C -0.121 4.121 10 C -0.195 4.195 11 C 0.378 3.622 12 O -0.420 6.420 13 N -0.359 5.359 14 C 0.035 3.965 15 C -0.170 4.170 16 H 0.123 0.877 17 C -0.190 4.190 18 H 0.120 0.880 19 C 0.027 3.973 20 N -0.317 5.317 21 C -0.357 4.357 22 H 0.093 0.907 23 C -0.202 4.202 24 N -0.559 5.559 25 Si 0.742 3.258 26 H -0.215 1.215 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.060 3.940 30 C -0.181 4.181 31 H 0.121 0.879 32 N -0.098 5.098 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.197 0.803 43 H 0.240 0.760 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.042 0.958 48 H 0.065 0.935 49 H 0.043 0.957 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.988 -2.771 -24.904 29.724 hybrid contribution -1.225 0.224 0.689 1.423 sum 14.764 -2.548 -24.215 28.475 Atomic orbital electron populations 1.22588 0.92253 1.05321 1.03610 1.21667 0.96670 0.96391 0.82017 0.88606 1.22075 0.96313 1.01941 0.96760 1.21730 0.95843 0.99800 0.99238 1.20285 0.99504 0.99720 0.87913 1.23460 0.91371 0.92981 0.95805 1.69933 1.25141 1.26173 0.99701 1.22720 0.94035 0.95565 0.99794 1.20592 1.04601 1.08575 0.85772 1.16712 0.80545 0.83657 0.81247 1.90655 1.66633 1.28653 1.56067 1.45714 1.31194 1.36743 1.22254 1.20914 0.86095 0.94999 0.94463 1.22525 0.92565 1.05199 0.96708 0.87748 1.23994 0.96678 0.98139 1.00227 0.87957 1.21149 0.96455 0.91915 0.87797 1.45183 1.33756 1.14226 1.38547 1.18973 0.98479 1.19606 0.98649 0.90716 1.24955 0.98047 1.00441 0.96729 1.69915 1.30472 1.30928 1.24622 0.86111 0.82464 0.77075 0.80144 1.21464 1.21549 1.20482 1.21006 0.93490 0.92611 0.86849 1.24228 0.99300 0.95112 0.99487 0.87865 1.45360 1.25175 1.32219 1.07044 0.92433 0.87383 0.91153 0.90471 0.89046 0.89663 0.90972 0.88901 0.88312 0.80340 0.75994 0.90759 0.91296 0.93205 0.95774 0.93544 0.95651 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.18 37.16 0.30 -1.37 16 2 C 0.13 1.14 3.27 -67.82 -0.22 0.92 16 3 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -0.70 5.11 -26.51 -0.14 -0.84 16 5 C -0.13 -0.57 5.96 -26.45 -0.16 -0.73 16 6 C -0.04 -0.22 6.33 -27.48 -0.17 -0.39 16 7 C 0.23 2.34 7.64 -155.32 -1.19 1.15 16 8 N -0.49 -6.04 11.20 -10.35 -0.12 -6.15 16 9 C 0.03 0.38 11.38 -17.36 -0.20 0.18 16 10 C -0.08 -0.93 6.56 -82.35 -0.54 -1.47 16 11 C 0.59 7.52 7.15 -12.81 -0.09 7.43 16 12 O -0.54 -8.00 13.02 5.21 0.07 -7.93 16 13 N -0.71 -8.08 5.54 -61.59 -0.34 -8.42 16 14 C 0.16 2.02 5.96 -4.04 -0.02 1.99 16 15 C -0.15 -2.21 5.39 -90.62 -0.49 -2.70 16 16 H 0.10 1.52 8.04 -51.93 -0.42 1.11 16 17 C -0.17 -2.91 6.74 -89.22 -0.60 -3.51 16 18 H 0.10 1.61 8.12 -51.93 -0.42 1.19 16 19 C 0.15 3.14 7.04 -2.41 -0.02 3.13 16 20 N -0.59 -15.04 3.37 -168.85 -0.57 -15.61 16 21 C -0.23 -6.34 10.34 -15.06 -0.16 -6.50 16 22 H 0.08 2.01 7.84 -52.48 -0.41 1.59 16 23 C 0.00 -0.12 5.39 -17.43 -0.09 -0.21 16 24 N -0.91 -26.61 11.02 55.49 0.61 -26.00 16 25 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.19 4.38 5.64 -2.40 -0.01 4.37 16 30 C -0.16 -2.93 6.85 -89.22 -0.61 -3.54 16 31 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 32 N -0.42 -4.45 2.97 -102.72 -0.30 -4.75 16 33 H 0.06 0.60 8.01 -51.93 -0.42 0.19 16 34 H 0.11 1.28 4.98 -51.93 -0.26 1.02 16 35 H 0.07 0.49 7.91 -51.93 -0.41 0.08 16 36 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.35 8.12 -51.92 -0.42 -0.07 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.18 1.56 7.76 -52.49 -0.41 1.16 16 43 H 0.40 3.86 7.67 -40.82 -0.31 3.55 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.90 7.94 -51.93 -0.41 0.49 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 2.23 6.72 -51.93 -0.35 1.88 16 LS Contribution 393.85 15.07 5.94 5.94 Total: -1.00 -33.16 393.85 -12.17 -45.33 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.02 Total: 2.90 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.41 Total: -2.09 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.72 Total: -60.93 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.16 -12.17 -45.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978189636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.050 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds