Wall clock time and date at job start Wed Apr 1 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.58106 * 2 1 4 4 C 1.53263 * 109.57694 * 239.73547 * 2 1 3 5 5 C 1.53160 * 109.44269 * 189.83208 * 4 2 1 6 6 C 1.53378 * 109.23242 * 69.32358 * 5 4 2 7 7 C 1.51117 * 108.24855 * 311.16085 * 6 5 4 8 8 N 1.30552 * 127.09115 * 196.07543 * 7 6 5 9 9 C 1.33450 * 109.68309 * 179.97438 * 8 7 6 10 10 C 1.36836 * 107.83738 * 359.96655 * 9 8 7 11 11 C 1.46768 * 126.91360 * 180.02562 * 10 9 8 12 12 O 1.21676 * 119.99954 * 158.66867 * 11 10 9 13 13 N 1.34779 * 119.99725 * 338.67040 * 11 10 9 14 14 C 1.46500 * 119.99479 * 184.68485 * 13 11 10 15 15 C 1.52998 * 109.46939 * 179.97438 * 14 13 11 16 16 H 1.09002 * 115.51968 * 29.58126 * 15 14 13 17 17 C 1.53002 * 117.44394 * 244.23624 * 15 14 13 18 18 H 1.08998 * 119.53845 * 4.12056 * 17 15 14 19 19 C 1.54388 * 118.12135 * 160.80812 * 17 15 14 20 20 N 1.48144 * 104.61825 * 87.19527 * 19 17 15 21 21 C 1.36934 * 127.83895 * 140.39364 * 20 19 17 22 22 H 1.08003 * 120.00265 * 341.42194 * 21 20 19 23 23 C 1.38811 * 120.00142 * 161.42658 * 21 20 19 24 24 N 1.31625 * 119.99598 * 351.29189 * 23 21 20 25 25 Si 1.86793 * 120.00392 * 171.29541 * 23 21 20 26 26 H 1.48497 * 109.47474 * 94.98146 * 25 23 21 27 27 H 1.48504 * 109.47432 * 214.98215 * 25 23 21 28 28 H 1.48507 * 109.47151 * 334.97964 * 25 23 21 29 29 C 1.48150 * 104.32284 * 320.41253 * 20 19 17 30 30 C 1.52996 * 117.44341 * 174.99722 * 15 14 13 31 31 H 1.09001 * 119.54359 * 355.88572 * 30 15 14 32 32 N 1.34878 * 123.91701 * 16.02940 * 7 6 5 33 33 H 1.09003 * 109.47325 * 205.62164 * 1 2 3 34 34 H 1.08997 * 109.47033 * 325.61931 * 1 2 3 35 35 H 1.08999 * 109.47506 * 85.61976 * 1 2 3 36 36 H 1.09004 * 109.47531 * 309.81355 * 4 2 1 37 37 H 1.09003 * 109.48163 * 69.82876 * 4 2 1 38 38 H 1.09003 * 109.51159 * 189.25747 * 5 4 2 39 39 H 1.09007 * 109.50774 * 309.35125 * 5 4 2 40 40 H 1.09004 * 109.70412 * 70.84908 * 6 5 4 41 41 H 1.08996 * 109.70560 * 191.42744 * 6 5 4 42 42 H 1.07996 * 126.08461 * 179.97438 * 9 8 7 43 43 H 0.96993 * 120.00117 * 4.67820 * 13 11 10 44 44 H 1.08997 * 109.46996 * 299.99477 * 14 13 11 45 45 H 1.08998 * 109.47347 * 60.00032 * 14 13 11 46 46 H 1.09006 * 110.40592 * 205.97500 * 19 17 15 47 47 H 1.08999 * 110.40729 * 328.40546 * 19 17 15 48 48 H 0.97006 * 119.99758 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.40326 * 280.80561 * 29 20 19 50 50 H 1.08994 * 110.40805 * 158.37211 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2472 5 6 3.5552 -0.9426 -1.1260 6 6 3.8323 -1.9734 -0.0245 7 6 3.0443 -1.5779 1.2028 8 7 3.2189 -2.0080 2.4230 9 6 2.3309 -1.4304 3.2346 10 6 1.5574 -0.5909 2.4801 11 6 0.4526 0.2521 2.9520 12 8 0.1022 1.2174 2.2993 13 7 -0.1736 -0.0428 4.1085 14 6 -1.3412 0.7360 4.5284 15 6 -1.8583 0.1995 5.8647 16 1 -1.1052 -0.2450 6.5154 17 6 -3.2576 -0.4190 5.8822 18 1 -3.8113 -0.5221 4.9490 19 6 -3.6261 -1.3523 7.0556 20 7 -4.1390 -0.4448 8.1082 21 6 -5.1979 -0.6505 8.9518 22 1 -5.9419 -1.3959 8.7128 23 6 -5.3150 0.0991 10.1142 24 7 -4.3280 0.8826 10.4943 25 14 -6.8732 -0.0040 11.1392 26 1 -6.6878 -1.0022 12.2229 27 1 -7.1630 1.3251 11.7348 28 1 -8.0079 -0.4170 10.2747 29 6 -3.2469 0.7360 8.0408 30 6 -3.0075 0.9578 6.5318 31 1 -3.3750 1.8805 6.0825 32 7 2.0235 -0.6964 1.1900 33 1 -0.3634 -0.9266 0.4444 34 1 -0.3633 0.8481 0.5803 35 1 -0.3634 0.0785 -1.0246 36 1 1.5454 -1.6933 -1.3355 37 1 1.8315 -0.1271 -2.1318 38 1 3.9481 -1.3086 -2.0745 39 1 4.0378 0.0013 -0.8720 40 1 3.5192 -2.9623 -0.3595 41 1 4.8968 -1.9844 0.2091 42 1 2.2392 -1.5960 4.2979 43 1 0.1487 -0.7708 4.6626 44 1 -1.0583 1.7825 4.6417 45 1 -2.1247 0.6508 3.7755 46 1 -4.3997 -2.0576 6.7518 47 1 -2.7432 -1.8844 7.4097 48 1 -4.4100 1.4068 11.3064 49 1 -2.3047 0.5299 8.5488 50 1 -3.7342 1.6062 8.4804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978189636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:50 Heat of formation + Delta-G solvation = 60.025317 kcal Electronic energy + Delta-G solvation = -29723.613332 eV Core-core repulsion = 25752.399586 eV Total energy + Delta-G solvation = -3971.213746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.56136 -40.81875 -40.04054 -38.08260 -36.39576 -35.05187 -34.62143 -32.80337 -31.77428 -30.78308 -28.93601 -28.75934 -27.91340 -26.51750 -24.04601 -23.91299 -22.98403 -22.80818 -21.81769 -21.01868 -20.80961 -20.00358 -18.94004 -18.77118 -17.46533 -17.02337 -16.69301 -16.64544 -16.49856 -15.98956 -15.61430 -15.61128 -15.37681 -15.18787 -14.90750 -14.61873 -14.44611 -14.37825 -14.26171 -13.89849 -13.41184 -13.27471 -13.18445 -13.18143 -12.88651 -12.71849 -12.61881 -12.32586 -12.07387 -12.02578 -11.98189 -11.93923 -11.79849 -11.67776 -11.51678 -11.00284 -10.84582 -10.73942 -10.67776 -10.56666 -10.07986 -9.46057 -8.87885 -7.93654 -5.30478 0.26877 1.37529 1.45876 1.47040 1.56972 1.75390 2.16710 2.22845 2.46988 2.73759 3.24662 3.25380 3.48627 3.54912 3.60612 3.65083 3.70950 3.79583 3.85132 4.05092 4.15639 4.18691 4.27524 4.29225 4.32786 4.42662 4.43631 4.55522 4.58988 4.62557 4.71906 4.73072 4.86434 4.90963 4.93622 4.95250 5.02832 5.04384 5.07355 5.18678 5.27245 5.28418 5.35372 5.44430 5.49252 5.51398 5.54120 5.64472 6.07197 6.17824 6.40660 6.87278 7.00532 7.10194 7.67506 8.47102 9.20881 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.030614 B = 0.001832 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.380106 B =15281.605095 C =15604.924968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.128 3.872 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.038 4.038 7 C 0.227 3.773 8 N -0.523 5.523 9 C 0.031 3.969 10 C -0.101 4.101 11 C 0.593 3.407 12 O -0.564 6.564 13 N -0.701 5.701 14 C 0.169 3.831 15 C -0.111 4.111 16 H 0.109 0.891 17 C -0.160 4.160 18 H 0.125 0.875 19 C 0.147 3.853 20 N -0.620 5.620 21 C -0.242 4.242 22 H 0.079 0.921 23 C -0.062 4.062 24 N -0.946 5.946 25 Si 0.979 3.021 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.268 1.268 29 C 0.191 3.809 30 C -0.174 4.174 31 H 0.116 0.884 32 N -0.421 5.421 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.197 0.803 43 H 0.415 0.585 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.027 0.973 48 H 0.250 0.750 49 H 0.003 0.997 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.613 -4.076 -27.594 32.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.026 3.974 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.160 4.160 6 C -0.076 4.076 7 C -0.036 4.036 8 N -0.242 5.242 9 C -0.123 4.123 10 C -0.218 4.218 11 C 0.381 3.619 12 O -0.445 6.445 13 N -0.352 5.352 14 C 0.046 3.954 15 C -0.130 4.130 16 H 0.127 0.873 17 C -0.179 4.179 18 H 0.143 0.857 19 C 0.022 3.978 20 N -0.344 5.344 21 C -0.371 4.371 22 H 0.096 0.904 23 C -0.256 4.256 24 N -0.593 5.593 25 Si 0.807 3.193 26 H -0.212 1.212 27 H -0.219 1.219 28 H -0.192 1.192 29 C 0.066 3.934 30 C -0.194 4.194 31 H 0.134 0.866 32 N -0.102 5.102 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.214 0.786 43 H 0.252 0.748 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.045 0.955 48 H 0.059 0.941 49 H 0.021 0.979 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.694 -3.802 -27.736 32.595 hybrid contribution -1.377 0.487 1.533 2.117 sum 15.318 -3.315 -26.204 30.533 Atomic orbital electron populations 1.22466 0.92956 1.03169 1.04386 1.21876 0.96152 0.96566 0.82782 0.89288 1.22099 0.96770 1.01933 0.95637 1.21738 0.95208 0.99166 0.99844 1.20549 0.99400 1.00920 0.86747 1.24302 0.90907 0.91832 0.96517 1.69960 1.26062 1.27387 1.00797 1.23097 0.93533 0.94990 1.00704 1.20569 1.05070 1.09376 0.86798 1.16808 0.80567 0.83412 0.81102 1.90662 1.67423 1.29696 1.56760 1.45558 1.30689 1.36811 1.22159 1.20710 0.86617 0.94915 0.93159 1.22406 0.91410 1.02133 0.97009 0.87265 1.23916 0.98695 0.95718 0.99575 0.85710 1.21302 0.96578 0.92159 0.87748 1.45510 1.33681 1.16019 1.39233 1.19353 0.99326 1.19294 0.99113 0.90363 1.25797 1.01109 1.00556 0.98136 1.70104 1.32370 1.31945 1.24914 0.85063 0.79115 0.76657 0.78465 1.21175 1.21910 1.19219 1.20740 0.91726 0.90838 0.90109 1.23910 1.03007 0.96489 0.96010 0.86632 1.45582 1.25201 1.32290 1.07159 0.93963 0.89992 0.88817 0.90324 0.86744 0.86739 0.91406 0.87492 0.87434 0.78600 0.74797 0.90816 0.90888 0.92600 0.95543 0.94105 0.97886 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 8.18 71.98 0.59 -2.44 16 2 C 0.13 2.00 3.27 45.09 0.15 2.15 16 3 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.13 -0.97 5.11 30.74 0.16 -0.81 16 5 C -0.12 -0.70 5.96 30.77 0.18 -0.52 16 6 C -0.04 -0.37 6.33 30.11 0.19 -0.18 16 7 C 0.23 4.39 7.64 138.30 1.06 5.44 16 8 N -0.52 -12.38 11.20 -186.67 -2.09 -14.47 16 9 C 0.03 0.68 11.38 84.12 0.96 1.64 16 10 C -0.10 -2.35 6.56 40.15 0.26 -2.09 16 11 C 0.59 14.66 7.15 86.47 0.62 15.28 16 12 O -0.56 -16.52 13.02 -4.27 -0.06 -16.57 16 13 N -0.70 -14.97 5.54 -467.01 -2.59 -17.55 16 14 C 0.17 4.00 5.96 86.38 0.51 4.51 16 15 C -0.11 -3.05 5.39 -10.79 -0.06 -3.11 16 16 H 0.11 3.00 8.04 -2.39 -0.02 2.98 16 17 C -0.16 -5.16 6.74 -9.89 -0.07 -5.23 16 18 H 0.13 3.55 8.12 -2.39 -0.02 3.54 16 19 C 0.15 5.95 7.04 86.53 0.61 6.56 16 20 N -0.62 -31.96 3.37 -688.13 -2.32 -34.28 16 21 C -0.24 -13.62 10.34 84.03 0.87 -12.75 16 22 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 23 C -0.06 -3.53 5.39 84.86 0.46 -3.08 16 24 N -0.95 -57.05 11.02 21.65 0.24 -56.81 16 25 Si 0.98 45.58 29.56 68.60 2.03 47.60 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 C 0.19 9.31 5.64 86.54 0.49 9.79 16 30 C -0.17 -6.26 6.85 -9.89 -0.07 -6.32 16 31 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 32 N -0.42 -8.58 2.97 -478.91 -1.42 -10.00 16 33 H 0.04 0.86 8.01 -2.39 -0.02 0.84 16 34 H 0.08 1.92 4.98 -2.40 -0.01 1.91 16 35 H 0.09 1.13 7.91 -2.39 -0.02 1.11 16 36 H 0.08 0.62 8.10 -2.39 -0.02 0.60 16 37 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.07 0.48 8.12 -2.38 -0.02 0.46 16 40 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.20 3.24 7.76 -2.91 -0.02 3.22 16 43 H 0.41 7.19 7.67 -92.71 -0.71 6.48 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 1.74 7.94 -2.39 -0.02 1.72 16 46 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 49 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 50 H 0.05 2.59 6.72 -2.39 -0.02 2.58 16 Total: -1.00 -74.56 393.85 0.94 -73.62 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.24 Total: 19.62 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.91 Total: 8.85 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -8.18 Total: -133.12 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.06 Total: -16.57 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.56 0.94 -73.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978189636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.642 kcal (2) G-P(sol) polarization free energy of solvation -74.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds