Wall clock time and date at job start Wed Apr 1 2020 03:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47362 * 2 1 4 4 C 1.34253 * 125.75597 * 124.99672 * 3 2 1 5 5 C 1.38041 * 107.41731 * 179.97438 * 4 3 2 6 6 C 1.47433 * 126.41347 * 180.02562 * 5 4 3 7 7 O 1.21606 * 119.99583 * 179.97438 * 6 5 4 8 8 N 1.34774 * 119.99901 * 359.96285 * 6 5 4 9 9 C 1.46501 * 119.99719 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47028 * 179.97438 * 9 8 6 11 11 H 1.08993 * 115.51524 * 29.58527 * 10 9 8 12 12 C 1.52996 * 117.44374 * 244.24003 * 10 9 8 13 13 H 1.09007 * 119.54177 * 4.12092 * 12 10 9 14 14 C 1.57695 * 116.11339 * 161.64032 * 12 10 9 15 15 N 1.48145 * 104.67726 * 87.30718 * 14 12 10 16 16 C 1.36936 * 127.83737 * 139.77502 * 15 14 12 17 17 H 1.07997 * 120.00001 * 344.33710 * 16 15 14 18 18 C 1.38806 * 119.99752 * 164.33887 * 16 15 14 19 19 N 1.31624 * 120.00289 * 350.57422 * 18 16 15 20 20 Si 1.86801 * 120.00093 * 170.56985 * 18 16 15 21 21 H 1.48500 * 109.46873 * 60.00011 * 20 18 16 22 22 H 1.48497 * 109.47248 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47147 * 300.00305 * 20 18 16 24 24 C 1.48146 * 104.32100 * 319.77815 * 15 14 12 25 25 C 1.53005 * 117.44355 * 175.00145 * 10 9 8 26 26 H 1.09006 * 119.53786 * 355.88025 * 25 10 9 27 27 C 1.41282 * 107.17003 * 0.02562 * 5 4 3 28 28 C 1.50702 * 125.99085 * 179.73186 * 27 5 4 29 29 C 1.52997 * 117.50431 * 188.75172 * 28 27 5 30 30 C 1.53000 * 117.49789 * 120.08875 * 28 27 5 31 31 N 1.30449 * 108.02541 * 0.02562 * 27 5 4 32 32 H 1.08996 * 109.47134 * 300.00147 * 1 2 3 33 33 H 1.08997 * 109.46961 * 60.00026 * 1 2 3 34 34 H 1.08997 * 109.46925 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47052 * 239.99335 * 2 1 3 36 36 H 1.09005 * 109.47157 * 119.99711 * 2 1 3 37 37 H 1.08004 * 126.29265 * 359.96138 * 4 3 2 38 38 H 0.96998 * 120.00416 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.47170 * 300.00007 * 9 8 6 40 40 H 1.09005 * 109.47052 * 59.99873 * 9 8 6 41 41 H 1.08999 * 110.91878 * 328.23198 * 14 12 10 42 42 H 1.08998 * 109.93860 * 205.89430 * 14 12 10 43 43 H 0.97001 * 120.00123 * 180.02562 * 19 18 16 44 44 H 1.08996 * 110.41115 * 280.79403 * 24 15 14 45 45 H 1.09008 * 110.40418 * 158.36536 * 24 15 14 46 46 H 1.09005 * 115.55160 * 334.42698 * 28 27 5 47 47 H 1.09001 * 117.49410 * 359.97438 * 29 28 27 48 48 H 1.08995 * 117.50194 * 145.02423 * 29 28 27 49 49 H 1.09006 * 117.49610 * 214.98575 * 30 28 27 50 50 H 1.08998 * 117.50030 * 0.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9125 0.8925 5 6 3.0715 3.2307 0.5364 6 6 3.9335 4.2030 1.2329 7 8 4.0271 5.3412 0.8152 8 7 4.6177 3.8303 2.3327 9 6 5.4747 4.7963 3.0245 10 6 6.1309 4.1231 4.2316 11 1 6.3062 3.0518 4.1339 12 6 5.7657 4.6533 5.6196 13 1 5.0114 5.4344 5.7152 14 6 6.0781 3.6954 6.8327 15 7 7.4803 4.0006 7.2006 16 6 8.0164 4.1009 8.4566 17 1 7.3678 4.2032 9.3140 18 6 9.3936 4.0710 8.6277 19 7 10.1761 3.7621 7.6154 20 14 10.1365 4.4694 10.2947 21 1 9.6284 3.5076 11.3056 22 1 11.6158 4.3672 10.2146 23 1 9.7558 5.8495 10.6893 24 6 8.1708 4.1728 5.9012 25 6 7.1589 4.9368 5.0204 26 1 7.4425 5.9291 4.6696 27 6 2.2979 3.4737 -0.6206 28 6 2.2020 4.7815 -1.3633 29 6 1.1517 4.8900 -2.4705 30 6 2.6365 4.7943 -2.8303 31 7 1.6762 2.3694 -0.9298 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 3.3132 1.4024 1.7345 38 1 4.5426 2.9226 2.6662 39 1 6.2467 5.1513 2.3419 40 1 4.8724 5.6398 3.3622 41 1 5.9812 2.6504 6.5385 42 1 5.4097 3.9188 7.6643 43 1 11.1384 3.7408 7.7351 44 1 8.4009 3.2024 5.4615 45 1 9.0812 4.7585 6.0294 46 1 2.4031 5.6743 -0.7711 47 1 0.5303 4.0152 -2.6620 48 1 0.6619 5.8541 -2.6070 49 1 3.1229 5.6957 -3.2032 50 1 2.9912 3.8568 -3.2583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978225249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:07 Heat of formation + Delta-G solvation = 122.933573 kcal Electronic energy + Delta-G solvation = -29011.794020 eV Core-core repulsion = 25043.308181 eV Total energy + Delta-G solvation = -3968.485840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.75356 -39.36242 -38.45847 -37.36072 -34.86806 -34.58181 -33.32696 -31.14552 -30.57657 -29.99786 -27.26148 -26.93548 -25.03467 -24.97152 -23.14024 -22.54096 -22.12775 -21.12177 -20.52712 -19.84456 -19.35304 -19.23524 -17.88560 -16.81802 -16.48609 -16.15458 -15.77652 -15.45691 -15.14051 -14.84988 -14.78936 -14.44817 -14.21032 -13.96584 -13.53434 -13.35142 -13.06474 -12.95451 -12.72680 -12.63654 -12.58558 -12.09831 -11.97771 -11.85042 -11.71275 -11.24767 -11.18261 -11.08319 -11.01870 -10.82533 -10.62227 -10.56559 -10.27311 -10.15101 -9.87348 -9.73783 -9.46817 -9.38147 -9.13143 -9.00640 -8.75123 -8.62032 -6.88188 -5.81165 -3.15437 1.24823 1.89023 1.96868 3.23978 3.37280 3.37864 3.42629 3.43762 3.80918 3.92577 4.18286 4.19688 4.35260 4.44197 4.45492 4.63516 4.66213 4.83077 4.89272 4.92988 5.04263 5.14248 5.17721 5.27572 5.32599 5.41390 5.43304 5.47313 5.47587 5.54856 5.60058 5.66980 5.78683 5.83186 5.96115 5.96386 5.99808 6.05848 6.23008 6.24266 6.41988 6.50013 6.57109 6.65494 6.71874 6.90623 7.30655 7.35160 7.51947 7.59965 7.70648 8.19839 8.31820 9.09686 9.72628 10.49803 11.33124 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.001874 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.481417 B =14934.933497 C =15971.154164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 N -0.357 5.357 4 C 0.099 3.901 5 C -0.280 4.280 6 C 0.592 3.408 7 O -0.543 6.543 8 N -0.723 5.723 9 C 0.157 3.843 10 C -0.152 4.152 11 H 0.101 0.899 12 C -0.172 4.172 13 H 0.107 0.893 14 C 0.156 3.844 15 N -0.594 5.594 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.006 4.006 19 N -0.916 5.916 20 Si 0.913 3.087 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.184 3.816 25 C -0.162 4.162 26 H 0.102 0.898 27 C 0.162 3.838 28 C -0.081 4.081 29 C -0.170 4.170 30 C -0.159 4.159 31 N -0.297 5.297 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.184 0.816 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.048 0.952 43 H 0.255 0.745 44 H 0.023 0.977 45 H 0.089 0.911 46 H 0.139 0.861 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.783 -6.450 -18.957 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.135 5.135 4 C -0.052 4.052 5 C -0.295 4.295 6 C 0.380 3.620 7 O -0.422 6.422 8 N -0.374 5.374 9 C 0.034 3.966 10 C -0.171 4.171 11 H 0.119 0.881 12 C -0.192 4.192 13 H 0.125 0.875 14 C 0.029 3.971 15 N -0.318 5.318 16 C -0.356 4.356 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.562 5.562 20 Si 0.743 3.257 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.210 1.210 24 C 0.058 3.942 25 C -0.183 4.183 26 H 0.120 0.880 27 C -0.004 4.004 28 C -0.100 4.100 29 C -0.207 4.207 30 C -0.198 4.198 31 N -0.118 5.118 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.201 0.799 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.107 0.893 46 H 0.157 0.843 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.120 0.880 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.311 -6.382 -19.869 28.433 hybrid contribution 1.013 -0.078 1.695 1.976 sum -18.298 -6.460 -18.174 26.587 Atomic orbital electron populations 1.22056 0.93370 1.03118 1.03819 1.21846 0.96498 0.76786 1.04321 1.48487 1.34217 1.10429 1.20402 1.23137 0.93156 0.93803 0.95134 1.20203 1.11463 0.94454 1.03401 1.17207 0.78672 0.86628 0.79527 1.90735 1.65131 1.20045 1.66248 1.45855 1.47645 1.15287 1.28623 1.20855 0.92719 0.90886 0.92174 1.22546 1.04008 0.99392 0.91194 0.88057 1.24715 0.99282 1.02870 0.92350 0.87508 1.21709 0.88302 0.94079 0.92979 1.45141 1.03618 1.81078 1.01929 1.18939 0.90144 1.43635 0.82887 0.90654 1.24898 0.96331 1.01246 0.97804 1.69891 1.03508 1.52709 1.30046 0.86191 0.78064 0.78370 0.83078 1.21004 1.21537 1.21045 1.21073 0.93801 0.96255 0.83043 1.24177 0.93027 1.00358 1.00733 0.88007 1.21411 0.92745 0.93301 0.92989 1.20526 1.05595 0.93535 0.90393 1.23013 0.92111 1.03477 1.02095 1.22964 0.97536 1.03487 0.95780 1.77073 1.24387 0.96675 1.13696 0.91882 0.90967 0.90437 0.89300 0.88112 0.79935 0.76941 0.91131 0.91451 0.95651 0.93380 0.93491 0.95880 0.89290 0.84301 0.88251 0.88323 0.88050 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.09 37.16 0.37 -0.40 16 2 C 0.13 0.60 7.21 -4.04 -0.03 0.57 16 3 N -0.36 -3.07 3.65 -60.80 -0.22 -3.30 16 4 C 0.10 0.84 10.94 -16.57 -0.18 0.66 16 5 C -0.28 -3.30 6.13 -105.07 -0.64 -3.94 16 6 C 0.59 8.02 7.81 -12.52 -0.10 7.92 16 7 O -0.54 -9.06 15.00 5.27 0.08 -8.99 16 8 N -0.72 -8.50 5.54 -61.38 -0.34 -8.84 16 9 C 0.16 2.12 5.95 -4.04 -0.02 2.10 16 10 C -0.15 -2.28 5.34 -90.62 -0.48 -2.76 16 11 H 0.10 1.48 8.04 -51.93 -0.42 1.06 16 12 C -0.17 -2.96 7.03 -87.38 -0.61 -3.57 16 13 H 0.11 1.71 8.12 -51.93 -0.42 1.29 16 14 C 0.16 3.18 7.10 -0.57 0.00 3.18 16 15 N -0.59 -15.05 3.38 -166.74 -0.56 -15.61 16 16 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 17 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 18 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 19 N -0.92 -26.59 10.88 55.49 0.60 -25.99 16 20 Si 0.91 21.78 29.56 -169.99 -5.03 16.76 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.18 4.35 5.70 -2.41 -0.01 4.33 16 25 C -0.16 -3.02 6.77 -89.22 -0.60 -3.63 16 26 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 27 C 0.16 1.99 6.80 -82.02 -0.56 1.43 16 28 C -0.08 -0.92 5.65 -91.77 -0.52 -1.44 16 29 C -0.17 -1.54 10.14 -26.69 -0.27 -1.81 16 30 C -0.16 -1.52 10.24 -26.69 -0.27 -1.80 16 31 N -0.30 -3.35 11.91 33.89 0.40 -2.95 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.22 8.06 -51.93 -0.42 -0.20 16 37 H 0.18 0.84 7.46 -52.48 -0.39 0.45 16 38 H 0.40 3.60 7.32 -40.82 -0.30 3.30 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 2.37 6.53 -51.92 -0.34 2.03 16 46 H 0.14 1.76 6.74 -51.93 -0.35 1.41 16 47 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 48 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 411.85 15.07 6.21 6.21 Total: -1.00 -34.05 411.85 -11.13 -45.18 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.08 Total: 3.39 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.19 Total: -5.86 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.12 Total: -56.69 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.05 -11.13 -45.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978225249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.112 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds