Wall clock time and date at job start Wed Apr 1 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47362 * 2 1 4 4 C 1.34253 * 125.75597 * 124.99672 * 3 2 1 5 5 C 1.38041 * 107.41731 * 179.97438 * 4 3 2 6 6 C 1.47433 * 126.41347 * 180.02562 * 5 4 3 7 7 O 1.21606 * 119.99583 * 179.97438 * 6 5 4 8 8 N 1.34774 * 119.99901 * 359.96285 * 6 5 4 9 9 C 1.46501 * 119.99719 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47028 * 179.97438 * 9 8 6 11 11 H 1.08993 * 115.51524 * 29.58527 * 10 9 8 12 12 C 1.52996 * 117.44374 * 244.24003 * 10 9 8 13 13 H 1.09007 * 119.54177 * 4.12092 * 12 10 9 14 14 C 1.57695 * 116.11339 * 161.64032 * 12 10 9 15 15 N 1.48145 * 104.67726 * 87.30718 * 14 12 10 16 16 C 1.36936 * 127.83737 * 139.77502 * 15 14 12 17 17 H 1.07997 * 120.00001 * 344.33710 * 16 15 14 18 18 C 1.38806 * 119.99752 * 164.33887 * 16 15 14 19 19 N 1.31624 * 120.00289 * 350.57422 * 18 16 15 20 20 Si 1.86801 * 120.00093 * 170.56985 * 18 16 15 21 21 H 1.48500 * 109.46873 * 60.00011 * 20 18 16 22 22 H 1.48497 * 109.47248 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47147 * 300.00305 * 20 18 16 24 24 C 1.48146 * 104.32100 * 319.77815 * 15 14 12 25 25 C 1.53005 * 117.44355 * 175.00145 * 10 9 8 26 26 H 1.09006 * 119.53786 * 355.88025 * 25 10 9 27 27 C 1.41282 * 107.17003 * 0.02562 * 5 4 3 28 28 C 1.50702 * 125.99085 * 179.73186 * 27 5 4 29 29 C 1.52997 * 117.50431 * 188.75172 * 28 27 5 30 30 C 1.53000 * 117.49789 * 120.08875 * 28 27 5 31 31 N 1.30449 * 108.02541 * 0.02562 * 27 5 4 32 32 H 1.08996 * 109.47134 * 300.00147 * 1 2 3 33 33 H 1.08997 * 109.46961 * 60.00026 * 1 2 3 34 34 H 1.08997 * 109.46925 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47052 * 239.99335 * 2 1 3 36 36 H 1.09005 * 109.47157 * 119.99711 * 2 1 3 37 37 H 1.08004 * 126.29265 * 359.96138 * 4 3 2 38 38 H 0.96998 * 120.00416 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.47170 * 300.00007 * 9 8 6 40 40 H 1.09005 * 109.47052 * 59.99873 * 9 8 6 41 41 H 1.08999 * 110.91878 * 328.23198 * 14 12 10 42 42 H 1.08998 * 109.93860 * 205.89430 * 14 12 10 43 43 H 0.97001 * 120.00123 * 180.02562 * 19 18 16 44 44 H 1.08996 * 110.41115 * 280.79403 * 24 15 14 45 45 H 1.09008 * 110.40418 * 158.36536 * 24 15 14 46 46 H 1.09005 * 115.55160 * 334.42698 * 28 27 5 47 47 H 1.09001 * 117.49410 * 359.97438 * 29 28 27 48 48 H 1.08995 * 117.50194 * 145.02423 * 29 28 27 49 49 H 1.09006 * 117.49610 * 214.98575 * 30 28 27 50 50 H 1.08998 * 117.50030 * 0.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9125 0.8925 5 6 3.0715 3.2307 0.5364 6 6 3.9335 4.2030 1.2329 7 8 4.0271 5.3412 0.8152 8 7 4.6177 3.8303 2.3327 9 6 5.4747 4.7963 3.0245 10 6 6.1309 4.1231 4.2316 11 1 6.3062 3.0518 4.1339 12 6 5.7657 4.6533 5.6196 13 1 5.0114 5.4344 5.7152 14 6 6.0781 3.6954 6.8327 15 7 7.4803 4.0006 7.2006 16 6 8.0164 4.1009 8.4566 17 1 7.3678 4.2032 9.3140 18 6 9.3936 4.0710 8.6277 19 7 10.1761 3.7621 7.6154 20 14 10.1365 4.4694 10.2947 21 1 9.6284 3.5076 11.3056 22 1 11.6158 4.3672 10.2146 23 1 9.7558 5.8495 10.6893 24 6 8.1708 4.1728 5.9012 25 6 7.1589 4.9368 5.0204 26 1 7.4425 5.9291 4.6696 27 6 2.2979 3.4737 -0.6206 28 6 2.2020 4.7815 -1.3633 29 6 1.1517 4.8900 -2.4705 30 6 2.6365 4.7943 -2.8303 31 7 1.6762 2.3694 -0.9298 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 3.3132 1.4024 1.7345 38 1 4.5426 2.9226 2.6662 39 1 6.2467 5.1513 2.3419 40 1 4.8724 5.6398 3.3622 41 1 5.9812 2.6504 6.5385 42 1 5.4097 3.9188 7.6643 43 1 11.1384 3.7408 7.7351 44 1 8.4009 3.2024 5.4615 45 1 9.0812 4.7585 6.0294 46 1 2.4031 5.6743 -0.7711 47 1 0.5303 4.0152 -2.6620 48 1 0.6619 5.8541 -2.6070 49 1 3.1229 5.6957 -3.2032 50 1 2.9912 3.8568 -3.2583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978225249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:06 Heat of formation + Delta-G solvation = 102.419709 kcal Electronic energy + Delta-G solvation = -29012.683568 eV Core-core repulsion = 25043.308181 eV Total energy + Delta-G solvation = -3969.375388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.49062 -40.59789 -39.78304 -38.11001 -36.25325 -35.12543 -34.91350 -32.77376 -31.52603 -30.72531 -28.83736 -28.51994 -26.61767 -25.62695 -24.07215 -23.27053 -22.79037 -22.69609 -21.75937 -20.97326 -20.75597 -20.17683 -18.83005 -18.64847 -17.30396 -16.97520 -16.83930 -16.58022 -16.24453 -15.97195 -15.89234 -15.60046 -15.22452 -15.09027 -14.78306 -14.58191 -14.43249 -14.06785 -13.99267 -13.43639 -13.32473 -13.15680 -13.09530 -12.83951 -12.79609 -12.67721 -12.48856 -12.42050 -12.30612 -11.95257 -11.87221 -11.83332 -11.73418 -11.72715 -11.38915 -10.99741 -10.82063 -10.66986 -10.49194 -10.21147 -10.04110 -9.54878 -8.88772 -7.90640 -5.26408 0.54300 1.04063 1.40152 1.46828 1.50141 1.56527 2.22280 2.43711 2.48855 2.80741 3.03866 3.27285 3.30057 3.55365 3.66465 3.74124 3.87817 3.90232 3.98560 4.07829 4.08513 4.14078 4.21531 4.29623 4.31334 4.36330 4.40168 4.45792 4.60175 4.65823 4.74256 4.74616 4.80989 4.82805 4.88198 4.95719 4.96363 5.04630 5.20007 5.22452 5.24836 5.28006 5.37673 5.45552 5.46536 5.54374 5.55860 5.68831 5.92798 6.19706 6.52714 6.71836 7.02573 7.35630 7.70262 8.48614 9.22936 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.001874 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.481417 B =14934.933497 C =15971.154164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.353 5.353 4 C 0.122 3.878 5 C -0.315 4.315 6 C 0.593 3.407 7 O -0.583 6.583 8 N -0.711 5.711 9 C 0.166 3.834 10 C -0.109 4.109 11 H 0.113 0.887 12 C -0.158 4.158 13 H 0.127 0.873 14 C 0.150 3.850 15 N -0.621 5.621 16 C -0.240 4.240 17 H 0.080 0.920 18 C -0.064 4.064 19 N -0.947 5.947 20 Si 0.979 3.021 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.279 1.279 24 C 0.190 3.810 25 C -0.181 4.181 26 H 0.109 0.891 27 C 0.145 3.855 28 C -0.103 4.103 29 C -0.154 4.154 30 C -0.155 4.155 31 N -0.318 5.318 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.136 0.864 37 H 0.227 0.773 38 H 0.412 0.588 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.054 0.946 43 H 0.249 0.751 44 H 0.004 0.996 45 H 0.049 0.951 46 H 0.120 0.880 47 H 0.097 0.903 48 H 0.114 0.886 49 H 0.111 0.889 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.521 -7.964 -18.920 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.003 4.003 3 N -0.130 5.130 4 C -0.031 4.031 5 C -0.330 4.330 6 C 0.382 3.618 7 O -0.465 6.465 8 N -0.363 5.363 9 C 0.043 3.957 10 C -0.128 4.128 11 H 0.131 0.869 12 C -0.178 4.178 13 H 0.145 0.855 14 C 0.025 3.975 15 N -0.345 5.345 16 C -0.369 4.369 17 H 0.098 0.902 18 C -0.257 4.257 19 N -0.594 5.594 20 Si 0.807 3.193 21 H -0.199 1.199 22 H -0.220 1.220 23 H -0.205 1.205 24 C 0.064 3.936 25 C -0.201 4.201 26 H 0.127 0.873 27 C -0.021 4.021 28 C -0.123 4.123 29 C -0.191 4.191 30 C -0.193 4.193 31 N -0.139 5.139 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.154 0.846 37 H 0.243 0.757 38 H 0.249 0.751 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.022 0.978 45 H 0.068 0.932 46 H 0.138 0.862 47 H 0.115 0.885 48 H 0.132 0.868 49 H 0.129 0.871 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.106 -7.940 -19.840 30.035 hybrid contribution 1.472 0.285 1.656 2.234 sum -19.633 -7.654 -18.184 27.834 Atomic orbital electron populations 1.22022 0.93464 1.04187 1.02277 1.22284 0.96461 0.74960 1.06549 1.48879 1.33502 1.11171 1.19472 1.23697 0.91588 0.92599 0.95216 1.20164 1.12808 0.95742 1.04245 1.17462 0.78508 0.86405 0.79465 1.90713 1.66542 1.21820 1.67382 1.45638 1.46877 1.15736 1.28052 1.20629 0.92747 0.91016 0.91357 1.22422 1.00398 0.99494 0.90494 0.86935 1.24644 0.98345 1.02568 0.92224 0.85531 1.21880 0.85894 0.95214 0.94558 1.45459 1.05767 1.81598 1.01710 1.19327 0.90629 1.42719 0.84245 0.90216 1.25733 0.96852 1.01838 1.01311 1.70086 1.03208 1.54201 1.31945 0.85154 0.76690 0.78332 0.79156 1.19932 1.22037 1.20470 1.20799 0.93835 0.95205 0.83713 1.23867 0.92567 1.00953 1.02702 0.87340 1.21575 0.93242 0.93723 0.93555 1.20480 1.07745 0.93071 0.90998 1.23039 0.91770 1.04135 1.00203 1.22999 0.98066 1.03755 0.94481 1.77019 1.24852 0.97067 1.14964 0.92772 0.93099 0.88066 0.88389 0.84571 0.75694 0.75073 0.91654 0.91659 0.94765 0.92777 0.94152 0.97767 0.93214 0.86236 0.88480 0.86777 0.87073 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 10.09 71.98 0.73 -0.42 16 2 C 0.12 0.72 7.21 86.38 0.62 1.34 16 3 N -0.35 -5.20 3.65 -346.29 -1.26 -6.46 16 4 C 0.12 1.69 10.94 84.28 0.92 2.62 16 5 C -0.31 -6.99 6.13 -20.15 -0.12 -7.12 16 6 C 0.59 15.42 7.81 86.67 0.68 16.10 16 7 O -0.58 -19.59 15.00 -4.05 -0.06 -19.65 16 8 N -0.71 -14.95 5.54 -466.36 -2.59 -17.54 16 9 C 0.17 4.13 5.95 86.38 0.51 4.64 16 10 C -0.11 -2.99 5.34 -10.79 -0.06 -3.05 16 11 H 0.11 2.92 8.04 -2.39 -0.02 2.90 16 12 C -0.16 -5.07 7.03 -8.70 -0.06 -5.13 16 13 H 0.13 3.63 8.12 -2.38 -0.02 3.61 16 14 C 0.15 5.88 7.10 87.73 0.62 6.51 16 15 N -0.62 -31.60 3.38 -681.43 -2.30 -33.90 16 16 C -0.24 -13.38 10.35 84.03 0.87 -12.51 16 17 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 18 C -0.06 -3.60 5.40 84.86 0.46 -3.14 16 19 N -0.95 -56.63 10.88 21.65 0.24 -56.39 16 20 Si 0.98 45.26 29.56 68.60 2.03 47.28 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C 0.19 9.18 5.70 86.53 0.49 9.67 16 25 C -0.18 -6.57 6.77 -9.89 -0.07 -6.64 16 26 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 27 C 0.15 3.52 6.80 43.51 0.30 3.81 16 28 C -0.10 -2.40 5.65 -11.54 -0.07 -2.47 16 29 C -0.15 -2.77 10.14 30.62 0.31 -2.46 16 30 C -0.15 -2.96 10.24 30.62 0.31 -2.65 16 31 N -0.32 -6.88 11.91 -46.68 -0.56 -7.43 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.23 8.14 -2.39 -0.02 0.22 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.14 -0.08 8.06 -2.38 -0.02 -0.10 16 37 H 0.23 0.91 7.46 -2.91 -0.02 0.89 16 38 H 0.41 5.93 7.32 -92.71 -0.68 5.25 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.71 7.94 -2.38 -0.02 1.69 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.05 2.76 6.53 -2.38 -0.02 2.75 16 46 H 0.12 3.22 6.74 -2.38 -0.02 3.21 16 47 H 0.10 1.78 7.90 -2.39 -0.02 1.76 16 48 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 50 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -77.52 411.85 2.21 -75.31 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.27 Total: 19.67 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 6.45 Total: -0.88 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -6.47 Total: -121.73 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.06 Total: -19.65 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -77.52 2.21 -75.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978225249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.732 kcal (2) G-P(sol) polarization free energy of solvation -77.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds