Wall clock time and date at job start Wed Apr 1 2020 03:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47061 * 2 1 4 4 N 1.28449 * 125.19194 * 87.84448 * 3 2 1 5 5 C 1.30856 * 110.92784 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.06799 * 180.02562 * 5 4 3 7 7 C 1.52993 * 117.50138 * 163.72011 * 6 5 4 8 8 C 1.53002 * 117.50050 * 95.05677 * 6 5 4 9 9 C 1.39670 * 107.86598 * 0.02562 * 5 4 3 10 10 C 1.36601 * 125.19401 * 267.54455 * 3 2 1 11 11 C 1.47169 * 126.88070 * 0.02562 * 10 3 2 12 12 O 1.21629 * 119.99680 * 5.06129 * 11 10 3 13 13 N 1.34772 * 119.99928 * 185.06595 * 11 10 3 14 14 C 1.46501 * 120.00092 * 185.16589 * 13 11 10 15 15 C 1.53001 * 109.47178 * 179.97438 * 14 13 11 16 16 H 1.08998 * 115.51458 * 29.58478 * 15 14 13 17 17 C 1.52998 * 117.44105 * 244.24047 * 15 14 13 18 18 H 1.09005 * 119.54285 * 4.12042 * 17 15 14 19 19 C 1.57697 * 116.10884 * 161.63830 * 17 15 14 20 20 N 1.48155 * 104.67212 * 87.31114 * 19 17 15 21 21 C 1.36930 * 127.83832 * 139.77860 * 20 19 17 22 22 H 1.08003 * 120.00242 * 341.44154 * 21 20 19 23 23 C 1.38807 * 120.00169 * 161.44883 * 21 20 19 24 24 N 1.31621 * 120.00207 * 2.99394 * 23 21 20 25 25 Si 1.86802 * 120.00280 * 182.99857 * 23 21 20 26 26 H 1.48505 * 109.46777 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.47439 * 119.99493 * 25 23 21 28 28 H 1.48508 * 109.46868 * 239.99919 * 25 23 21 29 29 C 1.48147 * 104.31898 * 319.77091 * 20 19 17 30 30 C 1.52994 * 117.44073 * 175.00170 * 15 14 13 31 31 H 1.09000 * 119.54568 * 355.88422 * 30 15 14 32 32 H 1.09000 * 109.47574 * 299.99932 * 1 2 3 33 33 H 1.09005 * 109.47418 * 59.99959 * 1 2 3 34 34 H 1.09004 * 109.47375 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47219 * 120.00014 * 2 1 3 36 36 H 1.09001 * 109.47186 * 240.00441 * 2 1 3 37 37 H 1.09007 * 115.55027 * 309.39366 * 6 5 4 38 38 H 1.09002 * 117.49862 * 359.97438 * 7 6 5 39 39 H 1.09007 * 117.50031 * 145.02020 * 7 6 5 40 40 H 1.09003 * 117.49989 * 214.97868 * 8 6 5 41 41 H 1.08997 * 117.49791 * 359.97438 * 8 6 5 42 42 H 1.08001 * 127.32378 * 180.02562 * 9 5 4 43 43 H 0.97001 * 120.00220 * 5.16342 * 13 11 10 44 44 H 1.08994 * 109.47305 * 300.00493 * 14 13 11 45 45 H 1.09003 * 109.46686 * 60.00111 * 14 13 11 46 46 H 1.08991 * 110.92421 * 328.23428 * 19 17 15 47 47 H 1.09001 * 109.93694 * 205.89007 * 19 17 15 48 48 H 0.96991 * 120.00467 * 180.02562 * 24 23 21 49 49 H 1.08996 * 110.41234 * 280.80277 * 29 20 19 50 50 H 1.09005 * 110.40407 * 158.36995 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2278 2.0923 1.0490 5 6 2.6625 3.2838 0.7268 6 6 3.0158 4.3893 1.6881 7 6 3.8526 5.5520 1.1510 8 6 4.4835 4.5275 2.0974 9 6 2.7410 3.3491 -0.6662 10 6 2.3258 2.1075 -1.1153 11 6 2.2309 1.6607 -2.5143 12 8 1.7581 0.5705 -2.7736 13 7 2.6680 2.4594 -3.5079 14 6 2.4710 2.0651 -4.9051 15 6 3.0540 3.1395 -5.8252 16 1 3.8985 3.6969 -5.4200 17 6 2.0805 3.8958 -6.7313 18 1 1.0107 3.7027 -6.6507 19 6 2.6004 5.2631 -7.3205 20 7 3.3068 4.8896 -8.5681 21 6 3.2906 5.5442 -9.7707 22 1 2.5056 6.2531 -9.9892 23 6 4.2830 5.2967 -10.7091 24 7 5.2060 4.3900 -10.4674 25 14 4.3087 6.2504 -12.3151 26 1 3.1704 7.2038 -12.3429 27 1 5.5857 7.0003 -12.4252 28 1 4.1900 5.3050 -13.4542 29 6 4.0347 3.6474 -8.2193 30 6 3.0519 2.8568 -7.3289 31 1 2.7058 1.8897 -7.6935 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 0.8899 36 1 1.8934 -0.5138 -0.8900 37 1 2.2601 4.6181 2.4397 38 1 4.1481 5.5172 0.1024 39 1 3.6478 6.5458 1.5494 40 1 4.6935 4.8477 3.1180 41 1 5.1936 3.8186 1.6717 42 1 3.0624 4.1883 -1.2653 43 1 3.1130 3.2954 -3.2981 44 1 2.9745 1.1161 -5.0892 45 1 1.4051 1.9556 -5.1048 46 1 3.2858 5.7502 -6.6270 47 1 1.7570 5.9169 -7.5424 48 1 5.8996 4.2173 -11.1229 49 1 4.9440 3.8822 -7.6661 50 1 4.2721 3.0804 -9.1195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978344364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:11 Heat of formation + Delta-G solvation = 125.272550 kcal Electronic energy + Delta-G solvation = -29207.204405 eV Core-core repulsion = 25238.819991 eV Total energy + Delta-G solvation = -3968.384414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.85180 -39.67581 -38.59882 -37.54254 -35.26530 -34.38960 -33.41131 -31.48758 -30.63484 -29.95830 -27.47034 -26.96904 -25.16304 -24.78432 -23.66563 -22.60314 -22.28566 -21.17735 -20.81628 -20.23864 -19.39680 -19.22932 -18.00980 -16.85395 -16.72426 -16.29099 -15.88268 -15.57033 -15.07455 -14.89277 -14.81188 -14.72880 -14.37681 -14.08123 -13.66628 -13.49651 -13.13262 -12.91144 -12.79380 -12.67983 -12.54031 -12.18562 -11.90920 -11.81623 -11.60854 -11.32326 -11.24110 -11.07910 -10.94110 -10.90415 -10.66518 -10.54485 -10.31761 -10.25671 -10.12106 -9.82764 -9.54126 -9.34717 -9.20938 -9.07957 -8.97798 -8.65842 -6.87361 -5.82326 -3.20664 1.02705 2.07772 2.21980 2.97710 3.00878 3.35364 3.41445 3.43791 3.52151 4.02351 4.11840 4.35305 4.42995 4.49154 4.58787 4.65961 4.67319 4.84078 4.90574 4.96210 4.97277 5.17737 5.25501 5.30280 5.33349 5.35571 5.39425 5.41964 5.45424 5.56639 5.58512 5.73462 5.75540 5.76887 5.81890 5.83819 5.84848 5.90795 6.16620 6.22301 6.24574 6.48828 6.50802 6.62779 6.66851 6.88138 7.24848 7.33897 7.55414 7.71099 7.81425 7.93948 8.21690 9.08620 9.70288 10.47847 11.30002 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.002007 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.098282 B =13949.622444 C =15288.913149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.253 5.253 4 N -0.270 5.270 5 C 0.054 3.946 6 C -0.074 4.074 7 C -0.166 4.166 8 C -0.167 4.167 9 C -0.181 4.181 10 C -0.034 4.034 11 C 0.589 3.411 12 O -0.542 6.542 13 N -0.706 5.706 14 C 0.156 3.844 15 C -0.156 4.156 16 H 0.104 0.896 17 C -0.172 4.172 18 H 0.107 0.893 19 C 0.156 3.844 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.004 4.004 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.290 1.290 29 C 0.178 3.822 30 C -0.160 4.160 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.160 0.840 43 H 0.405 0.595 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.028 0.972 47 H 0.048 0.952 48 H 0.254 0.746 49 H 0.021 0.979 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -4.453 24.879 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.040 5.040 4 N -0.103 5.103 5 C -0.102 4.102 6 C -0.094 4.094 7 C -0.203 4.203 8 C -0.205 4.205 9 C -0.210 4.210 10 C -0.162 4.162 11 C 0.374 3.626 12 O -0.421 6.421 13 N -0.356 5.356 14 C 0.034 3.966 15 C -0.175 4.175 16 H 0.122 0.878 17 C -0.192 4.192 18 H 0.125 0.875 19 C 0.029 3.971 20 N -0.318 5.318 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.201 4.201 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.217 1.217 29 C 0.053 3.947 30 C -0.181 4.181 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.178 0.822 43 H 0.240 0.760 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.039 0.961 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.641 -6.034 25.281 26.596 hybrid contribution 0.382 1.237 -1.354 1.873 sum -5.260 -4.797 23.927 24.964 Atomic orbital electron populations 1.22074 0.93353 1.03536 1.03116 1.22201 0.96339 0.76360 1.05763 1.45796 1.44326 1.12379 1.01524 1.73071 1.18730 1.04956 1.13551 1.20968 1.04148 0.92543 0.92555 1.20023 0.95020 0.94646 0.99692 1.23033 1.02872 0.94166 1.00252 1.23006 0.94678 1.02461 1.00375 1.22068 1.07265 0.96897 0.94807 1.21400 1.11006 0.93931 0.89885 1.16889 0.78348 0.84315 0.83028 1.90783 1.46217 1.20814 1.84247 1.45728 1.59596 1.24229 1.06095 1.20961 1.00764 0.97328 0.77580 1.22547 1.01732 1.00565 0.92634 0.87841 1.24731 0.95291 0.96631 1.02565 0.87542 1.21728 0.94959 0.91573 0.88832 1.45136 1.54948 1.25214 1.06498 1.19036 1.06658 1.19259 0.90530 0.90542 1.24978 0.96255 0.99364 0.99519 1.69834 1.16596 1.34305 1.35442 0.86038 0.77460 0.79320 0.82909 1.20342 1.21544 1.21678 1.21241 0.90052 0.86863 0.96566 1.24235 1.03153 0.99535 0.91177 0.88028 0.91907 0.91502 0.90052 0.88500 0.86496 0.86467 0.88176 0.88015 0.88306 0.88664 0.82202 0.75950 0.90733 0.91177 0.95467 0.93351 0.93527 0.96093 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.11 1.04 6.53 -4.04 -0.03 1.02 16 3 N -0.25 -2.91 3.35 -57.14 -0.19 -3.10 16 4 N -0.27 -3.23 11.90 33.64 0.40 -2.83 16 5 C 0.05 0.57 6.85 -82.47 -0.57 0.01 16 6 C -0.07 -0.61 6.33 -91.77 -0.58 -1.19 16 7 C -0.17 -1.07 10.03 -26.70 -0.27 -1.34 16 8 C -0.17 -1.17 10.24 -26.69 -0.27 -1.44 16 9 C -0.18 -1.84 9.78 -38.99 -0.38 -2.23 16 10 C -0.03 -0.39 6.96 -82.06 -0.57 -0.97 16 11 C 0.59 7.42 7.79 -12.64 -0.10 7.32 16 12 O -0.54 -8.03 14.71 5.25 0.08 -7.95 16 13 N -0.71 -7.93 5.53 -61.47 -0.34 -8.27 16 14 C 0.16 1.99 5.96 -4.04 -0.02 1.96 16 15 C -0.16 -2.26 5.34 -90.62 -0.48 -2.74 16 16 H 0.10 1.49 8.04 -51.93 -0.42 1.07 16 17 C -0.17 -2.89 7.03 -87.38 -0.61 -3.51 16 18 H 0.11 1.65 8.12 -51.93 -0.42 1.23 16 19 C 0.16 3.14 7.10 -0.56 0.00 3.13 16 20 N -0.59 -14.90 3.39 -166.72 -0.56 -15.46 16 21 C -0.23 -6.21 10.36 -15.06 -0.16 -6.36 16 22 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 23 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 24 N -0.92 -26.31 10.62 55.49 0.59 -25.72 16 25 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 C 0.18 4.17 5.76 -2.41 -0.01 4.16 16 30 C -0.16 -2.92 6.77 -89.22 -0.60 -3.53 16 31 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.12 1.17 6.29 -51.93 -0.33 0.84 16 37 H 0.12 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.10 0.63 7.22 -51.93 -0.37 0.26 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.16 1.23 7.05 -52.49 -0.37 0.86 16 43 H 0.41 3.73 7.48 -40.82 -0.31 3.43 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 2.62 6.30 -51.93 -0.33 2.29 16 LS Contribution 409.32 15.07 6.17 6.17 Total: -1.00 -31.99 409.32 -11.26 -43.25 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.00 Total: 4.22 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -4.38 Total: -6.88 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.11 Total: -55.38 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.08 Total: -7.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.99 -11.26 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978344364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.524 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds