Wall clock time and date at job start Wed Apr 1 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.50421 * 2 1 4 4 C 1.53138 * 109.50539 * 120.08125 * 2 1 3 5 5 C 1.53243 * 109.52811 * 189.73461 * 4 2 1 6 6 N 1.46580 * 108.78496 * 309.42330 * 5 4 2 7 7 C 1.34870 * 127.50028 * 197.47725 * 6 5 4 8 8 C 1.36564 * 106.78872 * 180.02562 * 7 6 5 9 9 C 1.47328 * 126.21274 * 179.97438 * 8 7 6 10 10 O 1.21617 * 119.99658 * 359.70817 * 9 8 7 11 11 N 1.34775 * 119.99625 * 179.71353 * 9 8 7 12 12 C 1.46504 * 119.99510 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47068 * 179.97438 * 12 11 9 14 14 H 1.08996 * 115.49695 * 330.37878 * 13 12 11 15 15 C 1.52999 * 117.44215 * 184.99740 * 13 12 11 16 16 H 1.08997 * 119.54330 * 4.12083 * 15 13 12 17 17 C 1.54393 * 118.12187 * 159.21416 * 15 13 12 18 18 N 1.48141 * 104.61872 * 89.20926 * 17 15 13 19 19 C 1.36943 * 127.84046 * 140.41467 * 18 17 15 20 20 H 1.08000 * 119.99808 * 195.57020 * 19 18 17 21 21 C 1.38808 * 119.99483 * 15.57283 * 19 18 17 22 22 N 1.31623 * 120.00644 * 9.09989 * 21 19 18 23 23 Si 1.86803 * 119.99642 * 189.10031 * 21 19 18 24 24 H 1.48497 * 109.47244 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46924 * 120.00213 * 23 21 19 26 26 H 1.48498 * 109.47414 * 239.99758 * 23 21 19 27 27 C 1.48150 * 104.32544 * 320.41370 * 18 17 15 28 28 C 1.54288 * 61.50020 * 251.67077 * 15 13 12 29 29 H 1.08998 * 121.81382 * 109.77169 * 28 15 13 30 30 N 1.35893 * 107.57729 * 359.66586 * 8 7 6 31 31 C 1.29796 * 108.85160 * 0.24320 * 30 8 7 32 32 C 1.51102 * 127.17601 * 179.88384 * 31 30 8 33 33 H 1.08994 * 109.47542 * 299.91471 * 1 2 3 34 34 H 1.09008 * 109.47092 * 59.92095 * 1 2 3 35 35 H 1.09003 * 109.46914 * 179.91213 * 1 2 3 36 36 H 1.08998 * 109.46092 * 69.72149 * 4 2 1 37 37 H 1.08993 * 109.45490 * 309.75330 * 4 2 1 38 38 H 1.09000 * 109.58734 * 189.63507 * 5 4 2 39 39 H 1.09000 * 109.58538 * 69.21388 * 5 4 2 40 40 H 1.08004 * 126.60298 * 359.89404 * 7 6 5 41 41 H 0.96993 * 120.00419 * 359.97438 * 11 9 8 42 42 H 1.09000 * 109.47414 * 59.99939 * 12 11 9 43 43 H 1.09001 * 109.46885 * 299.99879 * 12 11 9 44 44 H 1.08999 * 110.40757 * 207.99275 * 17 15 13 45 45 H 1.09002 * 110.40631 * 330.42667 * 17 15 13 46 46 H 0.96997 * 120.00218 * 179.97438 * 22 21 19 47 47 H 1.09002 * 110.40708 * 158.36833 * 27 18 17 48 48 H 1.08995 * 110.40575 * 280.68622 * 27 18 17 49 49 H 1.08997 * 109.71693 * 315.67517 * 32 31 30 50 50 H 1.09000 * 109.71919 * 76.33253 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7235 1.2491 5 6 3.5541 -0.5160 1.3780 6 7 4.1873 -0.8519 0.0994 7 6 5.4898 -1.1191 -0.1266 8 6 5.6138 -1.3755 -1.4622 9 6 6.8595 -1.7171 -2.1709 10 8 7.9079 -1.7866 -1.5586 11 7 6.8370 -1.9525 -3.4978 12 6 8.0758 -2.2917 -4.2026 13 6 7.7750 -2.5085 -5.6869 14 1 6.7757 -2.8797 -5.9138 15 6 8.9239 -2.9875 -6.5765 16 1 9.8888 -3.2233 -6.1277 17 6 8.5715 -3.6706 -7.9155 18 7 8.4901 -2.5595 -8.8920 19 6 8.9302 -2.5469 -10.1887 20 1 9.0400 -1.6088 -10.7125 21 6 9.2352 -3.7397 -10.8297 22 7 8.9346 -4.8881 -10.2611 23 14 10.0722 -3.7151 -12.4995 24 1 10.3016 -2.3088 -12.9176 25 1 11.3745 -4.4234 -12.4109 26 1 9.2067 -4.3938 -13.4972 27 6 7.8246 -1.4652 -8.1475 28 6 8.4314 -1.5334 -6.7295 29 1 9.0357 -0.6852 -6.4078 30 7 4.3785 -1.2652 -2.0178 31 6 3.5274 -0.9526 -1.0890 32 6 2.0422 -0.7260 -1.2504 33 1 -0.3634 0.5125 0.8907 34 1 -0.3634 0.5151 -0.8893 35 1 -0.3633 -1.0277 -0.0016 36 1 1.8268 -1.7889 1.1650 37 1 1.5430 -0.3213 2.1311 38 1 3.9464 -1.1644 2.1614 39 1 3.7603 0.5253 1.6254 40 1 6.2824 -1.1265 0.6070 41 1 6.0007 -1.8974 -3.9860 42 1 8.4959 -3.2045 -3.7803 43 1 8.7915 -1.4771 -4.0917 44 1 9.3551 -4.3719 -8.2022 45 1 7.6116 -4.1816 -7.8404 46 1 9.1474 -5.7216 -10.7093 47 1 8.0447 -0.5027 -8.6092 48 1 6.7479 -1.6308 -8.1104 49 1 1.8574 -0.1135 -2.1328 50 1 1.5331 -1.6842 -1.3537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978379626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:59 Heat of formation + Delta-G solvation = 71.101980 kcal Electronic energy + Delta-G solvation = -28862.226541 eV Core-core repulsion = 24891.493115 eV Total energy + Delta-G solvation = -3970.733426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.72378 -39.40303 -38.41401 -37.58622 -34.83088 -34.28980 -33.14480 -31.00833 -30.59663 -29.95714 -27.73028 -27.03713 -26.80764 -25.01500 -24.30076 -22.77728 -21.70430 -21.01834 -20.37036 -19.58025 -19.54713 -19.06690 -17.82587 -16.78164 -16.62804 -16.30530 -15.84155 -15.33817 -15.18469 -14.85024 -14.68332 -14.39860 -14.17592 -14.12016 -13.90985 -13.60918 -13.43211 -13.01733 -12.91849 -12.74273 -12.66177 -12.56766 -12.17962 -11.71634 -11.66660 -11.46255 -11.40647 -11.21325 -10.99785 -10.80440 -10.58595 -10.49746 -10.21392 -10.06721 -10.04556 -10.03102 -9.68462 -9.27095 -9.05074 -8.82443 -8.63892 -8.53803 -6.80680 -5.74991 -3.08945 1.41386 2.17811 2.23576 3.32579 3.41150 3.46902 3.49550 3.53708 3.69937 3.88951 3.97696 4.01342 4.16067 4.45005 4.51078 4.52837 4.64415 4.71023 4.90846 4.97411 4.99081 5.02775 5.09246 5.14640 5.17074 5.31834 5.37977 5.45260 5.48933 5.52089 5.52825 5.66283 5.66514 5.79611 5.88804 5.99563 6.02704 6.07643 6.23225 6.31633 6.52081 6.64971 6.69342 6.76568 6.81998 7.01724 7.43334 7.48521 7.59516 7.77275 7.79272 8.26388 8.35448 9.16159 9.78942 10.56769 11.39420 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021827 B = 0.001710 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.510704 B =16366.403379 C =17231.548169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.132 4.132 5 C 0.101 3.899 6 N -0.455 5.455 7 C 0.035 3.965 8 C -0.060 4.060 9 C 0.602 3.398 10 O -0.552 6.552 11 N -0.708 5.708 12 C 0.156 3.844 13 C -0.149 4.149 14 H 0.104 0.896 15 C -0.159 4.159 16 H 0.101 0.899 17 C 0.182 3.818 18 N -0.595 5.595 19 C -0.225 4.225 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.916 5.916 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.153 3.847 28 C -0.172 4.172 29 H 0.104 0.896 30 N -0.455 5.455 31 C 0.210 3.790 32 C -0.029 4.029 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.188 0.812 41 H 0.410 0.590 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.023 0.977 46 H 0.253 0.747 47 H 0.049 0.951 48 H 0.024 0.976 49 H 0.098 0.902 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.321 9.894 28.063 34.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.169 4.169 5 C -0.021 4.021 6 N -0.137 5.137 7 C -0.104 4.104 8 C -0.190 4.190 9 C 0.388 3.612 10 O -0.430 6.430 11 N -0.359 5.359 12 C 0.033 3.967 13 C -0.168 4.168 14 H 0.122 0.878 15 C -0.180 4.180 16 H 0.119 0.881 17 C 0.057 3.943 18 N -0.319 5.319 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.562 5.562 23 Si 0.742 3.258 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.027 3.973 28 C -0.192 4.192 29 H 0.122 0.878 30 N -0.175 5.175 31 C -0.053 4.053 32 C -0.068 4.068 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.205 0.795 41 H 0.245 0.755 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.041 0.959 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.042 0.958 49 H 0.117 0.883 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.681 9.597 27.503 33.567 hybrid contribution 0.378 0.077 -0.126 0.405 sum -16.303 9.674 27.377 33.300 Atomic orbital electron populations 1.21801 0.93502 1.02521 1.02512 1.21279 0.96938 0.99884 0.93597 0.90261 1.21999 0.92792 1.02531 0.99594 1.22101 0.94115 1.02513 0.83348 1.45338 1.07405 1.51344 1.09659 1.22419 0.86140 1.03667 0.98216 1.20634 0.92810 1.13740 0.91768 1.16858 0.86064 0.76489 0.81788 1.90783 1.31239 1.53686 1.67328 1.45821 1.12304 1.69867 1.07881 1.20840 0.85690 1.00664 0.89501 1.23129 0.98978 1.05025 0.89694 0.87798 1.24198 0.96781 0.98142 0.98837 0.88065 1.21091 0.99946 0.90598 0.82706 1.45225 1.67222 1.10329 1.09113 1.19049 1.36957 0.92763 0.86530 0.90555 1.24897 1.01736 0.95349 0.98434 1.69913 1.50958 0.96578 1.38764 0.86047 0.78914 0.77420 0.83379 1.20383 1.21646 1.21732 1.21154 0.94557 0.93018 0.88572 1.24609 1.04395 0.93889 0.96299 0.87778 1.70395 0.99176 1.17498 1.30392 1.23504 0.96586 1.04777 0.80469 1.20332 0.84810 1.02387 0.99274 0.92140 0.91836 0.92124 0.90363 0.89001 0.88748 0.89326 0.79494 0.75463 0.91029 0.91395 0.89256 0.95878 0.93649 0.93239 0.95814 0.88329 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.35 9.17 37.16 0.34 -0.01 16 2 C -0.10 -0.34 2.74 -90.35 -0.25 -0.59 16 3 H 0.08 0.30 8.12 -51.93 -0.42 -0.12 16 4 C -0.13 -0.34 5.24 -26.53 -0.14 -0.48 16 5 C 0.10 0.38 6.96 -3.87 -0.03 0.35 16 6 N -0.45 -3.70 3.11 -113.42 -0.35 -4.05 16 7 C 0.03 0.36 11.32 -16.82 -0.19 0.17 16 8 C -0.06 -0.81 6.98 -82.98 -0.58 -1.39 16 9 C 0.60 9.33 7.81 -12.56 -0.10 9.24 16 10 O -0.55 -9.87 16.88 5.26 0.09 -9.78 16 11 N -0.71 -10.40 5.55 -61.41 -0.34 -10.74 16 12 C 0.16 2.39 5.98 -4.04 -0.02 2.36 16 13 C -0.15 -2.50 5.54 -88.39 -0.49 -2.99 16 14 H 0.10 1.76 8.04 -51.93 -0.42 1.34 16 15 C -0.16 -3.15 6.71 -89.22 -0.60 -3.75 16 16 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 17 C 0.18 4.51 5.69 -2.41 -0.01 4.50 16 18 N -0.60 -15.70 3.38 -168.86 -0.57 -16.27 16 19 C -0.22 -6.41 10.35 -15.06 -0.16 -6.56 16 20 H 0.08 2.11 7.85 -52.49 -0.41 1.69 16 21 C -0.01 -0.21 5.40 -17.43 -0.09 -0.30 16 22 N -0.92 -27.32 10.86 55.49 0.60 -26.72 16 23 Si 0.91 22.32 29.56 -169.99 -5.03 17.30 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.15 3.34 7.06 -2.40 -0.02 3.32 16 28 C -0.17 -3.22 7.00 -86.98 -0.61 -3.83 16 29 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 30 N -0.46 -5.84 11.00 -7.01 -0.08 -5.92 16 31 C 0.21 2.03 7.64 -154.63 -1.18 0.85 16 32 C -0.03 -0.17 5.64 -27.48 -0.15 -0.33 16 33 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.06 0.16 8.14 -51.92 -0.42 -0.26 16 35 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.08 0.25 8.11 -51.93 -0.42 -0.18 16 37 H 0.09 0.07 8.12 -51.93 -0.42 -0.35 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.19 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.41 5.67 8.11 -40.82 -0.33 5.34 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 44 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.49 8.11 -51.93 -0.42 0.07 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -35.07 403.96 -12.10 -47.17 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.23 Total: 2.37 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -4.28 Total: 0.56 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.74 Total: -63.70 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.07 -12.10 -47.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978379626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.273 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds